Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002898

Physical Location & Seq

Genomic Coordinates Reverse (-)

29466221 .. 29469377

Gene Structure 3157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1246400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTATTTTTTTTTCCTTTTACTGCAGGGCTACAATGGAAGTCAAGCATGGGATACTTCTTTTGCCATTCCAGCGATCATATCAACTAACGTTGTTGAAGAGTATCGACCAACTTTAAGAAAAGCGCATCAGTATATCAAAGATTCCCAGGTTTTAGAAGATTGTCCCGGAGATCTGAATTTTTGGTATCGTCACATTTCAAAAGGTGCTTGGCCATTCTCAACCGCCGATCATGGATGGCCTATCTCTGACTGCACAGCAGAAGTGCTGAAGGCTGCCTTATTACTATCAAAACTTCCAGCAGAAACAGTTGGGGACTCATTAGATATAAAGCGTTTTTATGATGCTGTAAATATTACCCTTTCCTTACAGAATGACGATGGTGGTTTTGCAACTTATGAACTAACTAGATCATACCAGTGGTTGGAGCTTATCAACCCTGCCGAAACTTTTGGTGACATTGTTATTGATTATCCATATGTTGAATGCACCTCAGCGGCAATTCAAGCACTTGCATTGTTCAAAAAATTATGTCCTGGGCATAGGAGTGCAGAAATAGAAAACTGTATTGCTCGTGCTGCAAAGTTCATTGAAACGATACAAGCAACAGACGGATCTTGGTATGGTTCCTGGGGAGTATGCTTCACCTATGCTGGGTGGTTTGGAATAAAAGGGTTGCTTCCTTCAGGTGGATGGGGAGAAAGCTATCTATCATGTCAGAACAAGGATTATGATTCCTCAAATTTGAAATATACTTTCTTTTTCTTTCATACCCAAGGAGCTTGTTTCATTCCTTCAGTCAATTGCTGGTTTCGCTCGCATACTCATTTGGCAAGATGTATGATCTACGTGTACACAAATCTCAAGGACAATAGGCCACATATAGTTCATACTGCATGGGCTATGTTGGCCCTCATTGGTGCCGGGCAGACAACTCCGTTGCATCGGGCAGCCAGGGTACTAATCAATTCTCAAATGGAAAATGGACATTTCCCTCGAAAGGAGATCACTGGTGTTTTCAACAAGAACTGTACGATCAGCTATTCAGCCTACCGAAACATTTTTCCCGTTTGGGCCCTCGGAGAATATCCTTGCCAGATACATCGATGTAAACATCCGTGCATGAAGCAACACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

380

Amino Acids

43.07

Weight (kDa)

7.18

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	14 - 226	9.8e-25	Squalene-hopene cyclase C-terminal domain
SQHop_cyclase_C	PF13243	295 - 363	4.4e-10	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07050 AT2G07050
fragaria_vesca	FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_6g36510 FvH4_6g36510
malus_domestica	MD00G1130000.v1.1 MD00G1220900.v1.1 MD13G1232100.v1.1 MD16G1237000.v1.1 MD17G1159900.v1.1 MD17G1245900.v1.1 MD17G1246400.v1.1
prunus_persica	Prupe.1G063400_v2.0.a1 Prupe.3G026100_v2.0.a1 Prupe.3G026100_v2.0.a1
pyrus_communis	pycom09g08550
rosa_chinensis	RchiOBHm_Chr2g0148711 RchiOBHm_Chr2g0148821 RchiOBHm_Chr2g0148951 RchiOBHm_Chr4g0397221
rosa_laevigata	RLG00000009438 RLG00000020359
rosa_multiflora	Rmu_sc0001796.1_g000004 Rmu_sc0002312.1_g000065 Rmu_sc0008532.1_g000008 Rmu_sc0017689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098550 Rroxscaffold_5G00342160
rosa_rugosa	Rorug03G0225900 Rorug03G0343900 Rorug03G0343900
rosa_samantha	Rh2AG467200 Rh2DG488900
rosa_wichuraiana	Rw2G038090 Rw4G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	920
AccB7I	CCANNNNNTGG	1 cut(s)	424
AciI	CCGC	2 cut(s)	225, 497
AclI	AACGTT	1 cut(s)	90
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	178, 742
AcuI	CTGAAG	3 cut(s)	290, 669, 780
AfaI	GTAC	3 cut(s)	854, 960, 1033
AfiI	CCNNNNNNNGG	4 cut(s)	424, 654, 689, 1000
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	8 cut(s)	98, 201, 485, 506, 523, 593, 748, 1021
AjnI	CCWGG	4 cut(s)	147, 535, 629, 953
AluBI	AGCT	4 cut(s)	430, 705, 782, 1041
AluI	AGCT	4 cut(s)	430, 705, 782, 1041
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	5 cut(s)	212, 239, 875, 909, 1074
ApaI	GGGCCC	1 cut(s)	1078
ApeKI	GCWGC	3 cut(s)	275, 578, 950
ApoI	RAATTY	2 cut(s)	178, 742
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	910, 1074, 1075
AsuC2I	CCSGG	2 cut(s)	168, 925
AsuHPI	GGTGA	2 cut(s)	467, 637
BaeGI	GKGCMC	1 cut(s)	1078
BalI	TGGCCA	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	920
BanII	GRGCYC	1 cut(s)	1078
BauI	CACGAG	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	262, 565, 962
BccI	CCATC	3 cut(s)	231, 374, 687
BciT130I	CCWGG	4 cut(s)	149, 537, 631, 955
BciVI	GTATCC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	168, 925
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	276, 498, 579, 951
BlsI	GCNGC	4 cut(s)	277, 499, 580, 952
Bme1390I	CCNGG	6 cut(s)	149, 168, 537, 631, 925, 955
BmgT120I	GGNCC	3 cut(s)	910, 1074, 1075
BmiI	GGNNCC	3 cut(s)	628, 922, 1076
BmrFI	CCNGG	6 cut(s)	149, 168, 537, 631, 925, 955
BmsI	GCATC	3 cut(s)	136, 334, 952
Bpu10I	CCTNAGC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	2 cut(s)	168, 925
Bsa29I	ATCGAT	1 cut(s)	1105
BsaAI	YACGTR	1 cut(s)	850
BsaJI	CCNNGG	6 cut(s)	147, 536, 630, 775, 954, 1078
Bsc4I	CCNNNNNNNGG	4 cut(s)	424, 654, 689, 1000
Bse1I	ACTGG	2 cut(s)	418, 1015
BseBI	CCWGG	4 cut(s)	149, 537, 631, 955
BseCI	ATCGAT	1 cut(s)	1105
BseDI	CCNNGG	6 cut(s)	147, 536, 630, 775, 954, 1078
BseGI	GGATG	3 cut(s)	242, 698, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	424, 654, 689, 1000
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	418, 1015
BseSI	GKGCMC	1 cut(s)	1078
BseXI	GCAGC	3 cut(s)	262, 565, 962
BseYI	CCCAGC	1 cut(s)	653
BsgI	GTGCAG	2 cut(s)	238, 570
BshFI	GGCC	5 cut(s)	214, 241, 877, 911, 1076
BshNI	GGYRCC	1 cut(s)	920
BshVI	ATCGAT	1 cut(s)	1105
BsiSI	CCGG	2 cut(s)	168, 924
BslFI	GGGAC	2 cut(s)	150, 329
BslI	CCNNNNNNNGG	4 cut(s)	424, 654, 689, 1000
BsmFI	GGGAC	2 cut(s)	150, 329
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	5 cut(s)	214, 241, 877, 911, 1076
Bsp120I	GGGCCC	1 cut(s)	1074
Bsp1286I	GDGCHC	1 cut(s)	1078
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
BspACI	CCGC	2 cut(s)	225, 497
BspANI	GGCC	5 cut(s)	214, 241, 877, 911, 1076
BspCNI	CTCAG	1 cut(s)	506
BspDI	ATCGAT	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	628, 922, 1076
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	920
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	2 cut(s)	418, 1015
BssECI	CCNNGG	6 cut(s)	147, 536, 630, 775, 954, 1078
BssMI	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	775
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	4 cut(s)	149, 537, 631, 955
Bst4CI	ACNGT	4 cut(s)	310, 566, 1031, 1136
Bst6I	CTCTTC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	852
BstBAI	YACGTR	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	242, 698, 1114
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	8 cut(s)	78, 175, 232, 413, 617, 846, 1008, 1038
BstMBI	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 506, 578, 813, 908
BstNI	CCWGG	4 cut(s)	149, 537, 631, 955
BstSCI	CCNGG	6 cut(s)	147, 166, 535, 629, 923, 953
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	1078
BstV1I	GCAGC	3 cut(s)	262, 565, 962
BstX2I	RGATCY	2 cut(s)	172, 614
BstYI	RGATCY	2 cut(s)	172, 614
Bsu15I	ATCGAT	1 cut(s)	1105
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	5 cut(s)	214, 241, 877, 911, 1076
BsuTUI	ATCGAT	1 cut(s)	1105
BtsCI	GGATG	3 cut(s)	242, 698, 1114
BtsIMutI	CAGTG	2 cut(s)	425, 1008
Cac8I	GCNNGC	1 cut(s)	818
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	910, 1074, 1075
ClaI	ATCGAT	1 cut(s)	1105
Csp6I	GTAC	3 cut(s)	853, 959, 1032
CviAII	CATG	5 cut(s)	48, 233, 714, 897, 1123
CviQI	GTAC	3 cut(s)	853, 959, 1032
DdeI	CTNAG	1 cut(s)	493
DpnI	GATC	8 cut(s)	77, 174, 231, 412, 616, 845, 1007, 1037
DpnII	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	1078
Eco57I	CTGAAG	3 cut(s)	290, 669, 780
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoRII	CCWGG	4 cut(s)	147, 535, 629, 953
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	1078
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	5 cut(s)	51, 236, 717, 900, 1126
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 663, 695
FaqI	GGGAC	2 cut(s)	150, 329
FatI	CATG	5 cut(s)	47, 232, 713, 896, 1122
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	276, 498, 579, 951
FokI	GGATG	3 cut(s)	249, 705, 1101
FriOI	GRGCYC	1 cut(s)	1078
Fsp4HI	GCNGC	4 cut(s)	276, 498, 579, 951
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	4 cut(s)	276, 498, 579, 951
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	5 cut(s)	214, 241, 877, 911, 1076
HapII	CCGG	2 cut(s)	168, 924
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	5 cut(s)	51, 236, 717, 900, 1126
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	3 cut(s)	143, 317, 734
HpaII	CCGG	2 cut(s)	168, 924
HphI	GGTGA	2 cut(s)	467, 637
Hpy166II	GTNNAC	3 cut(s)	853, 855, 1112
Hpy188I	TCNGA	4 cut(s)	177, 250, 720, 1082
Hpy8I	GTNNAC	3 cut(s)	853, 855, 1112
HpyAV	CCTTC	3 cut(s)	265, 693, 804
HpyCH4III	ACNGT	4 cut(s)	310, 566, 1031, 1136
HpyCH4IV	ACGT	2 cut(s)	90, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 506, 578, 813, 908
HpyF3I	CTNAG	1 cut(s)	493
HpySE526I	ACGT	2 cut(s)	90, 849
Hsp92II	CATG	5 cut(s)	51, 236, 717, 900, 1126
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
LmnI	GCTCC	2 cut(s)	427, 779
Lsp1109I	GCAGC	3 cut(s)	262, 565, 962
LweI	GCATC	3 cut(s)	136, 334, 952
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	90, 849
MaeIII	GTNAC	2 cut(s)	191, 455
MalI	GATC	8 cut(s)	77, 174, 231, 412, 616, 845, 1007, 1037
MboI	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
MboII	GAAGA	2 cut(s)	110, 170
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	2 cut(s)	172, 614
MhlI	GDGCHC	1 cut(s)	1078
MlsI	TGGCCA	1 cut(s)	214
MluCI	AATT	6 cut(s)	178, 501, 527, 742, 802, 967
MluNI	TGGCCA	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	502, 748, 923, 1005, 1088
Mox20I	TGGCCA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	418, 546
Msp20I	TGGCCA	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	168, 924
MspR9I	CCNGG	6 cut(s)	149, 168, 537, 631, 925, 955
MunI	CAATTG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	4 cut(s)	149, 537, 631, 955
MwoI	GCNNNNNNNGC	5 cut(s)	71, 506, 578, 813, 908
NciI	CCSGG	2 cut(s)	168, 925
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
NlaIII	CATG	5 cut(s)	51, 236, 717, 900, 1126
NlaIV	GGNNCC	3 cut(s)	628, 922, 1076
NmuCI	GTSAC	2 cut(s)	191, 455
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	143, 734
PflMI	CCANNNNNTGG	1 cut(s)	424
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	277, 499, 580, 952
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	850
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	4 cut(s)	147, 535, 629, 953
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	4 cut(s)	147, 535, 629, 953
PspN4I	GGNNCC	3 cut(s)	628, 922, 1076
PspOMI	GGGCCC	1 cut(s)	1074
PspPI	GGNCC	3 cut(s)	910, 1074, 1075
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	172, 614
RsaI	GTAC	3 cut(s)	854, 960, 1033
RsaNI	GTAC	3 cut(s)	853, 959, 1032
RseI	CAYNNNNRTG	2 cut(s)	418, 546
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	4 cut(s)	276, 498, 579, 951
Sau3AI	GATC	8 cut(s)	75, 172, 229, 410, 614, 843, 1005, 1035
Sau96I	GGNCC	3 cut(s)	910, 1074, 1075
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	6 cut(s)	149, 168, 537, 631, 925, 955
SduI	GDGCHC	1 cut(s)	1078
SfaNI	GCATC	3 cut(s)	136, 334, 952
SfcI	CTRYAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	418, 546
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	178, 501, 527, 742, 802, 967
SsiI	CCGC	2 cut(s)	225, 497
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	6 cut(s)	147, 166, 535, 629, 923, 953
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	4 cut(s)	310, 566, 1031, 1136
TaiI	ACGT	2 cut(s)	93, 852
TaqI	TCGA	3 cut(s)	106, 997, 1105
TasI	AATT	6 cut(s)	178, 501, 527, 742, 802, 967
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	2 cut(s)	143, 734
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	425, 1015
TseFI	GTSAC	2 cut(s)	191, 455
TseI	GCWGC	3 cut(s)	275, 578, 950
Tsp45I	GTSAC	2 cut(s)	191, 455
TspDTI	ATGAA	6 cut(s)	414, 577, 758, 778, 878, 1139
TspGWI	ACGGA	3 cut(s)	627, 927, 1107
TspRI	CASTG	2 cut(s)	425, 1015
Van91I	CCANNNNNTGG	1 cut(s)	424
XapI	RAATTY	2 cut(s)	178, 742
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.