Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002898

Physical Location & Seq

Genomic Coordinates Forward (+)

20749527 .. 20755312

Gene Structure 5786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0225900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGGGTCAACCTCTCCTCAACCCCATCACCCTCTTTATCTCAAACCCATGCACCTCCTCCCTTTCCATCTTCATCATCTGCATTCTGGGCTTTTATACTCTACATTACCCCCACGCTTCACCTTCCCCCTCAAATTCCCAAACCGCCCTCATCTTCCGCCGTAGCTTCCTCTCCTCCGCCACCAACGCCACCGTCGCCGCCTACCTAAGGGCACTCACCCAACACCCCCACCTCGCCGGCACCAAACCCTCCCTCGACACCATCCACTATGTCCAGTCCCACTTCTCGGGCCTGGGCCTCCAGACCCACACGGCCCGCTACAACGCCCTCCTCTCCTACCCCCTCCACTCTTCTCTCTCCGCGCATTTTAGCAACGGCAGCCACGTGGACATCCCGCTGGCCGAGCCGGGTTTGTCCCACGACGGCGGCGGCGGCGGCGTCGTCCAACCGTACCACGCCTACTCGCCTTCCGGTTCGGCGCGCGCTAAGGTTGTCTTCGTGAACCACGGTAGCGGCGAGGACTATCGTGCGCTTGAGGCGCTCGGGGTGAGCGTTAGCGGGTGCGTGGTGATAGCGAGAAGAGGCGGCGACTTGCCGAGAGGCGAAGCGATCAGAAATGCCGAGAAGAACGGTGCGCTGGCCGTGCTATTGTACACCGAGGGGGACAGAAGGTTTAACCAGGGTTTTGAGAGAGGGGTGGTGATGAATGGCGTGGGGGACCCACTGACCCCCGGGTGGGGCGGAGTTGATGGAGCTGAAAGGTTGGATTTGGAGGACCCTGAGGTTCTGAAGAGGTTTCCCAATATTCCATCCATGCCATTGTCTGCCGAGGCGGCCGGGACCATTTTGGGAACCCTAGGCGGGGCCGGAGCCCCGCCGGAGTGGCGGGCCGGAGTAGGGCGAGTTGGGCCAGGCCCCACAGTGCTGAACTTCACTTACCAGGGGGAGAAAAAGATGGTGACCATTCAGAATGTTTTTGCTGTCATAAAGGGGTTGGAAGAGCCTGACCGCTATGTGCTTCTTGGCAACCATAGAGATGCATGGACATATGGGGCTGTTGACCCCAACAGTGGAACTGCCGCATTACTTGACATTGCTCGTCGATATGCTCTTCTTATTCATTCAGGTTGGAATCCTAGGAGGACAATTATCCTTTGTAGTTGGGATGCAGAAGAGTTTGGAATGATAGGATCTACCGAGTGGGTTGAACAAAACCTTGTTAATCTTGGCTCCAAAGCTGTTGCCTACCTTAATGTAGATTGTGCAGCCCAAGGGCCAGGATTCTTTGTTGGGGCGACTCCTCAGCTGGACAATCTCATTCTTGAGGTGACAAAGAAGGTCAAAGATCCTGACTTGGAGGGTTCCACTGTATATGAGAACTGGCTAACCAAAAATGGCATCATTGATATTCAAAGACTTAGTGGAGTTGATTCTGATTTTGCATCATTTGTGCAACATGCCGGGGTTCCTTCCATTGACATTTACTATGGGAGAGATTTTCCTGTTTATCACACTGCTTTTGACTCCTATGACTGGATGAGAAAGTTTGGAGATCCTTTATTTCATCGTCATGTGGCTGTTGCTGGAATATGGGGGCTAATAGCGCTCCACCTGGCTGATGATTCAATTCTCCCTTTCAATTACTTTTCATATGTGGATCAGTTAAAGCATTACAAAGATGTTTTGAGCCACTTGTTGGATGGGAGTATATTGCTAGATCCTCTCACAACAGCAATTGAGGAATTTGCCTATGCAGCCAAAGAAGCTGAAGATGAAGCGCAGAAGCTGAGAGAGGAAGAAAGTACAAGTGAGTTTGTAATGCTGAAGAAGCGGGCTTTGAATGATCGGCTGATGCTTGCTGAAAGAGGCTTCCTGGATTCTGACGGACTTGAAGGAAGACAGTGGTTCAAGCATCTTGTATATGGTCCTCCTTCTGATCACGGAAGCAAACTCTTTTTCTTTCCTGGAGTAGCAGATGCTATGAATCAAGCAAAGAGCACAAAAACAGGACAAGGGCAGGCAAAACTTCGACATGAGATTTGGAGAGTTGCCAGAGCCATTCAGAGGGCTGCCAGATCCTTGAGAGGAGAAATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

699

Amino Acids

76.38

Weight (kDa)

6.09

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	324 - 511	1.3e-23	Peptidase family M28
TFR_dimer	PF04253	572 - 694	2.5e-30	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07050 AT2G07050
fragaria_vesca	FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_6g36510 FvH4_6g36510
malus_domestica	MD00G1130000.v1.1 MD00G1220900.v1.1 MD13G1232100.v1.1 MD16G1237000.v1.1 MD17G1159900.v1.1 MD17G1245900.v1.1 MD17G1246400.v1.1
prunus_persica	Prupe.1G063400_v2.0.a1 Prupe.3G026100_v2.0.a1 Prupe.3G026100_v2.0.a1
pyrus_communis	pycom09g08550
rosa_chinensis	RchiOBHm_Chr2g0148711 RchiOBHm_Chr2g0148821 RchiOBHm_Chr2g0148951 RchiOBHm_Chr4g0397221
rosa_laevigata	RLG00000009438 RLG00000020359
rosa_multiflora	Rmu_sc0001796.1_g000004 Rmu_sc0002312.1_g000065 Rmu_sc0008532.1_g000008 Rmu_sc0017689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098550 Rroxscaffold_5G00342160
rosa_rugosa	Rorug03G0225900 Rorug03G0343900 Rorug03G0343900
rosa_samantha	Rh2AG467200 Rh2DG488900
rosa_wichuraiana	Rw2G038090 Rw4G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	1696
AccII	CGCG	3 cut(s)	362, 481, 483
AclWI	GGATC	6 cut(s)	1198, 1340, 1547, 1665, 1712, 2070
AcoI	YGGCCR	3 cut(s)	399, 639, 834
AcsI	RAATTY	3 cut(s)	133, 1742, 2091
AcuI	CTGAAG	3 cut(s)	809, 1788, 1844
AcvI	CACGTG	1 cut(s)	385
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	3 cut(s)	452, 653, 1804
AfeI	AGCGCT	1 cut(s)	1605
AgsI	TTSAA	7 cut(s)	1208, 1412, 1626, 1639, 1840, 1892, 1909
AjnI	CCWGG	8 cut(s)	291, 678, 910, 939, 1276, 1611, 1872, 1963
AluBI	AGCT	6 cut(s)	165, 755, 1238, 1306, 1766, 1786
AluI	AGCT	6 cut(s)	165, 755, 1238, 1306, 1766, 1786
Alw21I	GWGCWC	1 cut(s)	2000
AlwI	GGATC	6 cut(s)	1198, 1340, 1547, 1665, 1712, 2070
AlwNI	CAGNNNCTG	1 cut(s)	1786
Ama87I	CYCGRG	3 cut(s)	286, 542, 731
Aor51HI	AGCGCT	1 cut(s)	1605
ApeKI	GCWGC	4 cut(s)	378, 1265, 1754, 2069
ApoI	RAATTY	3 cut(s)	133, 1742, 2091
ArsI	GACNNNNNNTTYG	2 cut(s)	2022, 2054
AspA2I	CCTAGG	2 cut(s)	856, 1136
AspLEI	GCGC	9 cut(s)	364, 481, 483, 485, 532, 541, 637, 1606, 1780
AsuC2I	CCSGG	5 cut(s)	408, 732, 733, 838, 1462
AsuHPI	GGTGA	8 cut(s)	19, 111, 208, 559, 580, 712, 970, 1339
AvaI	CYCGRG	3 cut(s)	286, 542, 731
AvaII	GGWCC	4 cut(s)	718, 775, 840, 1925
AvrII	CCTAGG	2 cut(s)	856, 1136
AxyI	CCTNAGG	2 cut(s)	206, 780
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	874
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	487, 1903
Bbv12I	GWGCWC	1 cut(s)	2000
BbvCI	CCTCAGC	1 cut(s)	1302
BbvI	GCAGC	4 cut(s)	390, 1277, 1766, 2056
BccI	CCATC	7 cut(s)	32, 74, 269, 743, 817, 949, 1694
BceAI	ACGGC	5 cut(s)	144, 327, 391, 439, 626
BciT130I	CCWGG	8 cut(s)	293, 680, 912, 941, 1278, 1613, 1874, 1965
BclI	TGATCA	1 cut(s)	1936
BcnI	CCSGG	5 cut(s)	408, 732, 733, 838, 1462
BfaI	CTAG	3 cut(s)	857, 1137, 1715
BfoI	RGCGCY	2 cut(s)	542, 1607
BglI	GCCNNNNNGGC	2 cut(s)	833, 883
BlnI	CCTAGG	2 cut(s)	856, 1136
Bme18I	GGWCC	4 cut(s)	718, 775, 840, 1925
BmeT110I	CYCGRG	3 cut(s)	286, 542, 731
BmsI	GCATC	7 cut(s)	1027, 1156, 1407, 1451, 1842, 1921, 1966
BpiI	GAAGAC	2 cut(s)	487, 1903
BpmI	CTGGAG	2 cut(s)	284, 1986
Bpu10I	CCTNAGC	2 cut(s)	486, 1302
BpuEI	CTTGAG	2 cut(s)	554, 1343
BpuMI	CCSGG	5 cut(s)	408, 732, 733, 838, 1462
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	470
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	274, 1385, 1538
Bse21I	CCTNAGG	2 cut(s)	206, 780
Bse3DI	GCAATG	1 cut(s)	1092
BseBI	CCWGG	8 cut(s)	293, 680, 912, 941, 1278, 1613, 1874, 1965
BseGI	GGATG	6 cut(s)	261, 390, 809, 1171, 1542, 1705
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	3 cut(s)	771, 1316, 1778
BseNI	ACTGG	3 cut(s)	274, 1385, 1538
BsePI	GCGCGC	2 cut(s)	479, 481
BseRI	GAGGAG	6 cut(s)	5, 46, 163, 320, 1290, 2100
BseSI	GKGCMC	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	834
BseXI	GCAGC	4 cut(s)	390, 1277, 1766, 2056
BsgI	GTGCAG	1 cut(s)	1284
Bsh1236I	CGCG	3 cut(s)	362, 481, 483
Bsh1285I	CGRYCG	1 cut(s)	837
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	2000
BsiHKCI	CYCGRG	3 cut(s)	286, 542, 731
BsiSI	CCGG	9 cut(s)	237, 407, 471, 732, 837, 867, 878, 891, 1461
BslFI	GGGAC	5 cut(s)	262, 400, 677, 731, 853
BsmFI	GGGAC	5 cut(s)	262, 400, 677, 731, 853
BsmI	GAATGC	1 cut(s)	81
BsoBI	CYCGRG	3 cut(s)	286, 542, 731
Bsp1286I	GDGCHC	3 cut(s)	214, 874, 2000
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
BspCNI	CTCAG	3 cut(s)	772, 1315, 1779
BspFNI	CGCG	3 cut(s)	362, 481, 483
BspPI	GGATC	6 cut(s)	1198, 1340, 1547, 1665, 1712, 2070
BspQI	GCTCTTC	2 cut(s)	993, 1116
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	1092
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	3 cut(s)	274, 1385, 1538
BssAI	RCCGGY	1 cut(s)	236
BssHII	GCGCGC	2 cut(s)	479, 481
BssMI	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	856, 1136, 1270
Bst2UI	CCWGG	8 cut(s)	293, 680, 912, 941, 1278, 1613, 1874, 1965
Bst4CI	ACNGT	8 cut(s)	193, 450, 509, 632, 922, 1070, 1369, 1902
Bst6I	CTCTTC	6 cut(s)	355, 574, 785, 993, 1116, 1167
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	385
BstDEI	CTNAG	6 cut(s)	206, 486, 780, 1302, 1418, 1787
BstDSI	CCRYGG	1 cut(s)	505
BstEII	GGTNACC	1 cut(s)	958
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	6 cut(s)	261, 390, 809, 1171, 1542, 1705
BstFNI	CGCG	3 cut(s)	362, 481, 483
BstH2I	RGCGCY	2 cut(s)	542, 1607
BstHHI	GCGC	9 cut(s)	364, 481, 483, 485, 532, 541, 637, 1606, 1780
BstKTI	GATC	9 cut(s)	612, 1193, 1348, 1555, 1660, 1720, 1846, 1939, 2078
BstMBI	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
BstMCI	CGRYCG	1 cut(s)	837
BstNI	CCWGG	8 cut(s)	293, 680, 912, 941, 1278, 1613, 1874, 1965
BstNSI	RCATGY	1 cut(s)	1460
BstPI	GGTNACC	1 cut(s)	958
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	3 cut(s)	362, 481, 483
BstV1I	GCAGC	4 cut(s)	390, 1277, 1766, 2056
BstV2I	GAAGAC	2 cut(s)	487, 1903
BstX2I	RGATCY	5 cut(s)	1190, 1345, 1552, 1717, 2075
BstYI	RGATCY	5 cut(s)	1190, 1345, 1552, 1717, 2075
BstZI	CGGCCG	1 cut(s)	834
Bsu36I	CCTNAGG	2 cut(s)	206, 780
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	6 cut(s)	261, 390, 809, 1171, 1542, 1705
BtsI	GCAGTG	1 cut(s)	1512
BtsIMutI	CAGTG	6 cut(s)	722, 927, 1075, 1365, 1512, 1907
CaiI	CAGNNNCTG	1 cut(s)	1786
CfoI	GCGC	9 cut(s)	364, 481, 483, 485, 532, 541, 637, 1606, 1780
Cfr10I	RCCGGY	1 cut(s)	236
Cfr9I	CCCGGG	1 cut(s)	731
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	3 cut(s)	451, 652, 1803
CviAII	CATG	6 cut(s)	48, 814, 1041, 1457, 1571, 2033
CviQI	GTAC	3 cut(s)	451, 652, 1803
DdeI	CTNAG	6 cut(s)	206, 486, 780, 1302, 1418, 1787
DpnI	GATC	9 cut(s)	611, 1192, 1347, 1554, 1659, 1719, 1845, 1938, 2077
DpnII	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
EaeI	YGGCCR	3 cut(s)	399, 639, 834
EagI	CGGCCG	1 cut(s)	834
Eam1104I	CTCTTC	6 cut(s)	355, 574, 785, 993, 1116, 1167
EarI	CTCTTC	6 cut(s)	355, 574, 785, 993, 1116, 1167
EciI	GGCGGA	3 cut(s)	146, 166, 756
EclXI	CGGCCG	1 cut(s)	834
Eco130I	CCWWGG	3 cut(s)	856, 1136, 1270
Eco24I	GRGCYC	1 cut(s)	874
Eco47I	GGWCC	4 cut(s)	718, 775, 840, 1925
Eco47III	AGCGCT	1 cut(s)	1605
Eco52I	CGGCCG	1 cut(s)	834
Eco57I	CTGAAG	3 cut(s)	809, 1788, 1844
Eco72I	CACGTG	1 cut(s)	385
Eco81I	CCTNAGG	2 cut(s)	206, 780
Eco88I	CYCGRG	3 cut(s)	286, 542, 731
Eco91I	GGTNACC	1 cut(s)	958
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoO109I	RGGNCCY	3 cut(s)	718, 775, 914
EcoO65I	GGTNACC	1 cut(s)	958
EcoRII	CCWGG	8 cut(s)	291, 678, 910, 939, 1276, 1611, 1872, 1963
EcoT14I	CCWWGG	3 cut(s)	856, 1136, 1270
EcoT22I	ATGCAT	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	3 cut(s)	856, 1136, 1270
FaeI	CATG	6 cut(s)	51, 817, 1044, 1460, 1574, 2036
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	5 cut(s)	262, 400, 677, 731, 853
FatI	CATG	6 cut(s)	47, 813, 1040, 1456, 1570, 2032
FauI	CCCGC	7 cut(s)	323, 402, 551, 854, 879, 882, 1824
FauNDI	CATATG	2 cut(s)	1048, 1651
FbaI	TGATCA	1 cut(s)	1936
FokI	GGATG	6 cut(s)	248, 377, 796, 1178, 1549, 1712
FriOI	GRGCYC	1 cut(s)	874
FspBI	CTAG	3 cut(s)	857, 1137, 1715
GlaI	GCGC	9 cut(s)	363, 480, 482, 484, 531, 540, 636, 1605, 1779
GsuI	CTGGAG	2 cut(s)	284, 1986
HaeII	RGCGCY	2 cut(s)	542, 1607
HapII	CCGG	9 cut(s)	237, 407, 471, 732, 837, 867, 878, 891, 1461
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	9 cut(s)	364, 481, 483, 485, 532, 541, 637, 1606, 1780
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	51, 817, 1044, 1460, 1574, 2036
Hin6I	GCGC	9 cut(s)	362, 479, 481, 483, 530, 539, 635, 1604, 1778
HinP1I	GCGC	9 cut(s)	362, 479, 481, 483, 530, 539, 635, 1604, 1778
HincII	GTYRAC	2 cut(s)	8, 1060
HindII	GTYRAC	2 cut(s)	8, 1060
HinfI	GANTC	8 cut(s)	1132, 1281, 1297, 1430, 1523, 1622, 1877, 1984
HpaII	CCGG	9 cut(s)	237, 407, 471, 732, 837, 867, 878, 891, 1461
HphI	GGTGA	8 cut(s)	19, 111, 208, 559, 580, 712, 970, 1339
Hpy166II	GTNNAC	5 cut(s)	8, 388, 502, 654, 1060
Hpy188I	TCNGA	7 cut(s)	614, 789, 969, 1435, 1882, 1936, 2064
Hpy188III	TCNNGA	4 cut(s)	301, 499, 1322, 1349
Hpy8I	GTNNAC	5 cut(s)	8, 388, 502, 654, 1060
Hpy99I	CGWCG	4 cut(s)	197, 425, 443, 1104
HpyAV	CCTTC	7 cut(s)	132, 477, 663, 1330, 1479, 1886, 1941
HpyCH4III	ACNGT	8 cut(s)	193, 450, 509, 632, 922, 1070, 1369, 1902
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	8 cut(s)	51, 81, 1040, 1169, 1265, 1442, 1453, 1754
HpyF3I	CTNAG	6 cut(s)	206, 486, 780, 1302, 1418, 1787
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	6 cut(s)	51, 817, 1044, 1460, 1574, 2036
HspAI	GCGC	9 cut(s)	362, 479, 481, 483, 530, 539, 635, 1604, 1778
KflI	GGGWCCC	1 cut(s)	718
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	1936
Kzo9I	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
LguI	GCTCTTC	2 cut(s)	993, 1116
LmnI	GCTCC	4 cut(s)	752, 869, 1235, 1611
Lsp1109I	GCAGC	4 cut(s)	390, 1277, 1766, 2056
LweI	GCATC	7 cut(s)	1027, 1156, 1407, 1451, 1842, 1921, 1966
MaeI	CTAG	3 cut(s)	857, 1137, 1715
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	958, 1327
MalI	GATC	9 cut(s)	611, 1192, 1347, 1554, 1659, 1719, 1845, 1938, 2077
MboI	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
MfeI	CAATTG	1 cut(s)	1734
MflI	RGATCY	5 cut(s)	1190, 1345, 1552, 1717, 2075
MhlI	GDGCHC	3 cut(s)	214, 874, 2000
MluCI	AATT	7 cut(s)	133, 1146, 1626, 1639, 1734, 1742, 2091
MlyI	GAGTC	2 cut(s)	1291, 1517
MmeI	TCCRAC	5 cut(s)	469, 744, 975, 1109, 1677
Mph1103I	ATGCAT	1 cut(s)	1042
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	4 cut(s)	675, 1221, 1251, 1664
MslI	CAYNNNNRTG	2 cut(s)	1035, 1569
MspA1I	CMGCKG	2 cut(s)	397, 1306
MspI	CCGG	9 cut(s)	237, 407, 471, 732, 837, 867, 878, 891, 1461
MunI	CAATTG	1 cut(s)	1734
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	8 cut(s)	293, 680, 912, 941, 1278, 1613, 1874, 1965
MvnI	CGCG	3 cut(s)	362, 481, 483
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	5 cut(s)	408, 732, 733, 838, 1462
NdeI	CATATG	2 cut(s)	1048, 1651
NdeII	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	51, 817, 1044, 1460, 1574, 2036
NmeAIII	GCCGAG	4 cut(s)	427, 621, 646, 853
NmuCI	GTSAC	2 cut(s)	958, 1327
NsiI	ATGCAT	1 cut(s)	1042
NspI	RCATGY	1 cut(s)	1460
PauI	GCGCGC	2 cut(s)	479, 481
PciSI	GCTCTTC	2 cut(s)	993, 1116
PcsI	WCGNNNNNNNCGW	3 cut(s)	381, 513, 549
PctI	GAATGC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	6 cut(s)	1132, 1281, 1430, 1622, 1877, 1984
PflMI	CCANNNNNTGG	1 cut(s)	1696
PfoI	TCCNGGA	2 cut(s)	1872, 1963
PleI	GAGTC	2 cut(s)	1291, 1517
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	2 cut(s)	1291, 1517
Ppu21I	YACGTR	1 cut(s)	385
PpuMI	RGGWCCY	2 cut(s)	718, 775
Psp5II	RGGWCCY	2 cut(s)	718, 775
Psp6I	CCWGG	8 cut(s)	291, 678, 910, 939, 1276, 1611, 1872, 1963
PspCI	CACGTG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	958
PspGI	CCWGG	8 cut(s)	291, 678, 910, 939, 1276, 1611, 1872, 1963
PspPPI	RGGWCCY	2 cut(s)	718, 775
PsrI	GAACNNNNNNTAC	2 cut(s)	920, 952
PstNI	CAGNNNCTG	1 cut(s)	1786
PsuI	RGATCY	5 cut(s)	1190, 1345, 1552, 1717, 2075
PteI	GCGCGC	2 cut(s)	479, 481
PvuII	CAGCTG	1 cut(s)	1306
RsaI	GTAC	3 cut(s)	452, 653, 1804
RsaNI	GTAC	3 cut(s)	451, 652, 1803
RseI	CAYNNNNRTG	2 cut(s)	1035, 1569
SapI	GCTCTTC	2 cut(s)	993, 1116
SaqAI	TTAA	4 cut(s)	675, 1221, 1251, 1664
Sau3AI	GATC	9 cut(s)	609, 1190, 1345, 1552, 1657, 1717, 1843, 1936, 2075
SchI	GAGTC	2 cut(s)	1291, 1517
SduI	GDGCHC	3 cut(s)	214, 874, 2000
SfaNI	GCATC	7 cut(s)	1027, 1156, 1407, 1451, 1842, 1921, 1966
SinI	GGWCC	4 cut(s)	718, 775, 840, 1925
SmaI	CCCGGG	1 cut(s)	733
SmiMI	CAYNNNNRTG	2 cut(s)	1035, 1569
SmlI	CTYRAG	3 cut(s)	533, 1322, 2080
SmoI	CTYRAG	3 cut(s)	533, 1322, 2080
Sse9I	AATT	7 cut(s)	133, 1146, 1626, 1639, 1734, 1742, 2091
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	3 cut(s)	857, 1137, 1715
StyI	CCWWGG	3 cut(s)	856, 1136, 1270
TaaI	ACNGT	8 cut(s)	193, 450, 509, 632, 922, 1070, 1369, 1902
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	255, 1102, 2029
TasI	AATT	7 cut(s)	133, 1146, 1626, 1639, 1734, 1742, 2091
TatI	WGTACW	2 cut(s)	651, 1802
TauI	GCSGC	9 cut(s)	200, 429, 432, 435, 438, 516, 588, 836, 1082
TfiI	GAWTC	6 cut(s)	1132, 1281, 1430, 1622, 1877, 1984
Tru1I	TTAA	4 cut(s)	675, 1221, 1251, 1664
Tru9I	TTAA	4 cut(s)	675, 1221, 1251, 1664
TscAI	CASTG	6 cut(s)	729, 927, 1075, 1372, 1519, 1907
TseFI	GTSAC	2 cut(s)	958, 1327
TseI	GCWGC	4 cut(s)	378, 1265, 1754, 2069
Tsp45I	GTSAC	2 cut(s)	958, 1327
TspDTI	ATGAA	7 cut(s)	61, 719, 1109, 1553, 1638, 1788, 1997
TspGWI	ACGGA	2 cut(s)	1899, 1956
TspMI	CCCGGG	1 cut(s)	731
TspRI	CASTG	6 cut(s)	729, 927, 1075, 1372, 1519, 1907
Van91I	CCANNNNNTGG	1 cut(s)	1696
VpaK11BI	GGWCC	4 cut(s)	718, 775, 840, 1925
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	3 cut(s)	133, 1742, 2091
XceI	RCATGY	1 cut(s)	1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1697
XmaI	CCCGGG	1 cut(s)	731
XmaJI	CCTAGG	2 cut(s)	856, 1136
XspI	CTAG	3 cut(s)	857, 1137, 1715
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.