Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002898

Physical Location & Seq

Genomic Coordinates Reverse (-)

29435039 .. 29439179

Gene Structure 4141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1245900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCAGCATATACATTATGAAGATGAAAATACTCGGTACTTATGCATAGGGCCTGTTAACAAGGATCCAAACTCAGAGGCATTCAAGTTGCATCTCCCGAGAATCCCTGATTATTTATGGATCGCTGAAGATGGCATGATGATGCAGGACAGTTATAGCATTAAATTGGCTGGAACTGATTTTAAGATTCTTCCCATCTCTTCCCGACTCCCTCTTTCTTACCTGAAGCAATCTCAATTTGGTCTGGCATCGCTAGAGTTTGGCTACAATGGAAGTCAAGCATGGGATACTTCTTTTGCCATTCAAGCGATCATATCAACTAACCTTGTTGAAAAGTATGGACCAACTTTAAGAAAAGCGCATCAGTATATCAAAGATTCCCAGGTTTTAGAAGATTGTCCCGGAGATCTGAACTTTTGGTATCGTCACATTTCAAAAGGTGCTTGGCCATTCTCAACCGCCGATCATGGATGGCCTATCTCTGACTGCACAGCAGAAGTGCTGAAGGCTGCCTTATTACTATCAAAACTTCCAGCAGAAACAGTTGGGGACTCATTAGATATAAAGCGTTTTTATGATGCAGTAAATGTTACCCTTTCCTTACAGGTAAATCACTGGCTGTACGGGATACTGTGGAATGACGATGGTGGTTTTGCAACTTATGAACTAACTAGATCATACCAGTGGTTGGAGCTAATCAACCCAGCCGAAACTTTTGGTGACATTGTTATTGATTATCCATATGTTGAATGCACCTCAGCGGCAATTCAAGCACTTGCATTGTTCAAAAAATTATGTCCTGGGCATAGGAGTGAAGAAATAGAAAACTGTATTGCTCGTGCTGGAAAGTTCATTGAAACGATACAAGCAACAGACGGATCTTGGTATGGTTCCTGGGGAGTATGCTTGACCTATGCTGGGTGGTTTGGAATAAAAGGGTTGCTTTCTTCAGGTGGATGGGGAGAAAGCTATCTATCATGTCAGAACAAGGTGTACACAAATCTCAAGGACAATAGGCCACATATAGTTCATACTGCATGGGCTATGTTGGCCCTCATTGGTGCCGGGCAGGCTAAGAGAGACCCAACTCCGTTGCATCGGGCAGCTAGGGTACTAATCAATTCTCAAATGGAAAATGGAGATTTCCCTCAAAAGGAGATCACTGGTGTTTTCAACAAGAACTGTATGATCAGCTATTCAGCCTACCGAAACATTTTTCCCGTTTGGGCCCTCGGAGAATATCCGTGCCAGATACATCGATGTAAACATCCGTGCATGAAGCAACACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

431

Amino Acids

48.65

Weight (kDa)

6.27

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	92 - 314	6.8e-20	Squalene-hopene cyclase C-terminal domain
SQHop_cyclase_C	PF13243	317 - 414	1e-15	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07050 AT2G07050
fragaria_vesca	FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_6g36510 FvH4_6g36510
malus_domestica	MD00G1130000.v1.1 MD00G1220900.v1.1 MD13G1232100.v1.1 MD16G1237000.v1.1 MD17G1159900.v1.1 MD17G1245900.v1.1 MD17G1246400.v1.1
prunus_persica	Prupe.1G063400_v2.0.a1 Prupe.3G026100_v2.0.a1 Prupe.3G026100_v2.0.a1
pyrus_communis	pycom09g08550
rosa_chinensis	RchiOBHm_Chr2g0148711 RchiOBHm_Chr2g0148821 RchiOBHm_Chr2g0148951 RchiOBHm_Chr4g0397221
rosa_laevigata	RLG00000009438 RLG00000020359
rosa_multiflora	Rmu_sc0001796.1_g000004 Rmu_sc0002312.1_g000065 Rmu_sc0008532.1_g000008 Rmu_sc0017689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098550 Rroxscaffold_5G00342160
rosa_rugosa	Rorug03G0225900 Rorug03G0343900 Rorug03G0343900
rosa_samantha	Rh2AG467200 Rh2DG488900
rosa_wichuraiana	Rw2G038090 Rw4G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1061
AccB7I	CCANNNNNTGG	1 cut(s)	688
AciI	CCGC	2 cut(s)	459, 761
AclWI	GGATC	4 cut(s)	59, 72, 128, 886
AcoI	YGGCCR	1 cut(s)	446
AcuI	CTGAAG	4 cut(s)	147, 245, 524, 933
AfaI	GTAC	4 cut(s)	38, 623, 995, 1113
AfiI	CCNNNNNNNGG	3 cut(s)	688, 918, 1153
AgsI	TTSAA	9 cut(s)	85, 305, 332, 435, 749, 770, 787, 857, 1174
AjnI	CCWGG	3 cut(s)	381, 799, 893
AluBI	AGCT	4 cut(s)	694, 969, 1106, 1194
AluI	AGCT	4 cut(s)	694, 969, 1106, 1194
Alw26I	GTCTC	1 cut(s)	1074
AlwI	GGATC	4 cut(s)	59, 72, 128, 886
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	6 cut(s)	50, 446, 473, 1016, 1050, 1227
ApaI	GGGCCC	1 cut(s)	1231
ApeKI	GCWGC	3 cut(s)	4, 509, 1103
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	5 cut(s)	50, 341, 1051, 1227, 1228
AsuC2I	CCSGG	2 cut(s)	402, 1066
AsuHPI	GGTGA	1 cut(s)	731
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	1231
BalI	TGGCCA	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	1061
BanII	GRGCYC	1 cut(s)	1231
BauI	CACGAG	1 cut(s)	837
BbvCI	CCTCAGC	1 cut(s)	757
BbvI	GCAGC	3 cut(s)	16, 496, 1115
BccI	CCATC	5 cut(s)	125, 203, 465, 638, 951
BciT130I	CCWGG	3 cut(s)	383, 801, 895
BciVI	GTATCC	2 cut(s)	280, 621
BclI	TGATCA	1 cut(s)	1188
BcnI	CCSGG	2 cut(s)	402, 1066
BcoDI	GTCTC	1 cut(s)	1074
BfaI	CTAG	3 cut(s)	254, 672, 1107
BfuI	GTATCC	2 cut(s)	280, 621
BglI	GCCNNNNNGGC	1 cut(s)	1070
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	4 cut(s)	5, 510, 762, 1104
BlsI	GCNGC	4 cut(s)	6, 511, 763, 1105
Bme1390I	CCNGG	5 cut(s)	383, 402, 801, 895, 1066
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	5 cut(s)	50, 341, 1051, 1227, 1228
BmiI	GGNNCC	4 cut(s)	66, 892, 1063, 1229
BmrFI	CCNGG	5 cut(s)	383, 402, 801, 895, 1066
BmsI	GCATC	6 cut(s)	100, 132, 257, 370, 568, 1105
Bpu10I	CCTNAGC	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	989
BpuMI	CCSGG	2 cut(s)	402, 1066
Bsa29I	ATCGAT	1 cut(s)	1258
BsaI	GGTCTC	1 cut(s)	1074
BsaJI	CCNNGG	4 cut(s)	381, 800, 894, 1231
Bsc4I	CCNNNNNNNGG	3 cut(s)	688, 918, 1153
Bse1I	ACTGG	3 cut(s)	620, 682, 1168
BseBI	CCWGG	3 cut(s)	383, 801, 895
BseCI	ATCGAT	1 cut(s)	1258
BseDI	CCNNGG	4 cut(s)	381, 800, 894, 1231
BseGI	GGATG	3 cut(s)	476, 962, 1267
BseLI	CCNNNNNNNGG	3 cut(s)	688, 918, 1153
BseMII	CTCAG	2 cut(s)	87, 771
BseNI	ACTGG	3 cut(s)	620, 682, 1168
BseSI	GKGCMC	1 cut(s)	1231
BseXI	GCAGC	3 cut(s)	16, 496, 1115
BseYI	CCCAGC	2 cut(s)	703, 917
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	6 cut(s)	52, 448, 475, 1018, 1052, 1229
BshNI	GGYRCC	1 cut(s)	1061
BshVI	ATCGAT	1 cut(s)	1258
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	402, 1065
BslFI	GGGAC	2 cut(s)	384, 563
BslI	CCNNNNNNNGG	3 cut(s)	688, 918, 1153
BsmAI	GTCTC	1 cut(s)	1074
BsmFI	GGGAC	2 cut(s)	384, 563
BsmI	GAATGC	2 cut(s)	80, 755
BsnI	GGCC	6 cut(s)	52, 448, 475, 1018, 1052, 1229
Bso31I	GGTCTC	1 cut(s)	1074
BsoBI	CYCGRG	1 cut(s)	97
Bsp120I	GGGCCC	1 cut(s)	1227
Bsp1286I	GDGCHC	1 cut(s)	1231
Bsp1407I	TGTACA	1 cut(s)	993
Bsp143I	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
BspACI	CCGC	2 cut(s)	459, 761
BspANI	GGCC	6 cut(s)	52, 448, 475, 1018, 1052, 1229
BspCNI	CTCAG	2 cut(s)	86, 770
BspDI	ATCGAT	1 cut(s)	1258
BspLI	GGNNCC	4 cut(s)	66, 892, 1063, 1229
BspPI	GGATC	4 cut(s)	59, 72, 128, 886
BspT107I	GGYRCC	1 cut(s)	1061
BspTNI	GGTCTC	1 cut(s)	1074
BsrGI	TGTACA	1 cut(s)	993
BsrI	ACTGG	3 cut(s)	620, 682, 1168
BssECI	CCNNGG	4 cut(s)	381, 800, 894, 1231
BssMI	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
BssSI	CACGAG	1 cut(s)	837
Bst2BI	CACGAG	1 cut(s)	837
Bst2UI	CCWGG	3 cut(s)	383, 801, 895
Bst4CI	ACNGT	6 cut(s)	152, 544, 633, 830, 1184, 1289
Bst6I	CTCTTC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	993
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	3 cut(s)	73, 757, 1074
BstF5I	GGATG	3 cut(s)	476, 962, 1267
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	9 cut(s)	67, 123, 312, 409, 466, 677, 881, 1161, 1191
BstMAI	GTCTC	1 cut(s)	1074
BstMBI	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 770, 1049, 1070
BstNI	CCWGG	3 cut(s)	383, 801, 895
BstSCI	CCNGG	5 cut(s)	381, 400, 799, 893, 1064
BstSLI	GKGCMC	1 cut(s)	1231
BstV1I	GCAGC	3 cut(s)	16, 496, 1115
BstX2I	RGATCY	3 cut(s)	64, 406, 878
BstYI	RGATCY	3 cut(s)	64, 406, 878
Bsu15I	ATCGAT	1 cut(s)	1258
BsuI	GTATCC	2 cut(s)	280, 621
BsuRI	GGCC	6 cut(s)	52, 448, 475, 1018, 1052, 1229
BsuTUI	ATCGAT	1 cut(s)	1258
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	476, 962, 1267
BtsIMutI	CAGTG	3 cut(s)	613, 689, 1161
Cac8I	GCNNGC	1 cut(s)	1071
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	5 cut(s)	50, 341, 1051, 1227, 1228
ClaI	ATCGAT	1 cut(s)	1258
Csp6I	GTAC	4 cut(s)	37, 622, 994, 1112
CviAII	CATG	6 cut(s)	136, 282, 467, 978, 1038, 1276
CviQI	GTAC	4 cut(s)	37, 622, 994, 1112
DdeI	CTNAG	3 cut(s)	73, 757, 1074
DpnI	GATC	9 cut(s)	66, 122, 311, 408, 465, 676, 880, 1160, 1190
DpnII	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	1231
Eco31I	GGTCTC	1 cut(s)	1074
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	4 cut(s)	147, 245, 524, 933
Eco88I	CYCGRG	1 cut(s)	97
EcoO109I	RGGNCCY	2 cut(s)	50, 1228
EcoRII	CCWGG	3 cut(s)	381, 799, 893
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	1231
FaeI	CATG	6 cut(s)	139, 285, 470, 981, 1041, 1279
FalI	AAGNNNNNCTT	4 cut(s)	497, 529, 927, 959
FaqI	GGGAC	2 cut(s)	384, 563
FatI	CATG	6 cut(s)	135, 281, 466, 977, 1037, 1275
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	1188
Fnu4HI	GCNGC	4 cut(s)	5, 510, 762, 1104
FokI	GGATG	3 cut(s)	483, 969, 1254
FriOI	GRGCYC	1 cut(s)	1231
Fsp4HI	GCNGC	4 cut(s)	5, 510, 762, 1104
FspBI	CTAG	3 cut(s)	254, 672, 1107
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	4 cut(s)	5, 510, 762, 1104
GsaI	CCCAGC	2 cut(s)	707, 921
HaeIII	GGCC	6 cut(s)	52, 448, 475, 1018, 1052, 1229
HapII	CCGG	2 cut(s)	402, 1065
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	6 cut(s)	139, 285, 470, 981, 1041, 1279
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	5 cut(s)	102, 187, 207, 377, 551
HpaI	GTTAAC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	402, 1065
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	4 cut(s)	58, 994, 996, 1265
Hpy188I	TCNGA	5 cut(s)	76, 411, 484, 984, 1235
Hpy188III	TCNNGA	2 cut(s)	97, 204
Hpy8I	GTNNAC	4 cut(s)	58, 994, 996, 1265
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	6 cut(s)	152, 544, 633, 830, 1184, 1289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 770, 1049, 1070
HpyF3I	CTNAG	3 cut(s)	73, 757, 1074
Hsp92II	CATG	6 cut(s)	139, 285, 470, 981, 1041, 1279
HspAI	GCGC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	1188
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	3 cut(s)	16, 496, 1115
LweI	GCATC	6 cut(s)	100, 132, 257, 370, 568, 1105
MaeI	CTAG	3 cut(s)	254, 672, 1107
MaeIII	GTNAC	3 cut(s)	425, 589, 719
MalI	GATC	9 cut(s)	66, 122, 311, 408, 465, 676, 880, 1160, 1190
MboI	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
MboII	GAAGA	7 cut(s)	32, 140, 182, 192, 404, 827, 939
MflI	RGATCY	3 cut(s)	64, 406, 878
MhlI	GDGCHC	1 cut(s)	1231
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	5 cut(s)	164, 236, 765, 791, 1120
MluNI	TGGCCA	1 cut(s)	448
MlyI	GAGTC	2 cut(s)	201, 545
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	6 cut(s)	70, 222, 766, 1064, 1158, 1241
Mox20I	TGGCCA	1 cut(s)	448
Mph1103I	ATGCAT	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	4 cut(s)	57, 162, 183, 350
MslI	CAYNNNNRTG	3 cut(s)	140, 682, 810
Msp20I	TGGCCA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	2 cut(s)	402, 1065
MspR9I	CCNGG	5 cut(s)	383, 402, 801, 895, 1066
Mva1269I	GAATGC	2 cut(s)	80, 755
MvaI	CCWGG	3 cut(s)	383, 801, 895
MwoI	GCNNNNNNNGC	4 cut(s)	305, 770, 1049, 1070
NciI	CCSGG	2 cut(s)	402, 1066
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
NlaIII	CATG	6 cut(s)	139, 285, 470, 981, 1041, 1279
NlaIV	GGNNCC	4 cut(s)	66, 892, 1063, 1229
NmuCI	GTSAC	2 cut(s)	425, 719
NsiI	ATGCAT	1 cut(s)	47
PctI	GAATGC	2 cut(s)	80, 755
PfeI	GAWTC	3 cut(s)	102, 187, 377
PflMI	CCANNNNNTGG	1 cut(s)	688
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	6, 511, 763, 1105
PleI	GAGTC	2 cut(s)	201, 545
PpsI	GAGTC	2 cut(s)	201, 545
Psp6I	CCWGG	3 cut(s)	381, 799, 893
PspFI	CCCAGC	2 cut(s)	703, 917
PspGI	CCWGG	3 cut(s)	381, 799, 893
PspN4I	GGNNCC	4 cut(s)	66, 892, 1063, 1229
PspOMI	GGGCCC	1 cut(s)	1227
PspPI	GGNCC	5 cut(s)	50, 341, 1051, 1227, 1228
PsrI	GAACNNNNNNTAC	2 cut(s)	977, 1009
PsuI	RGATCY	3 cut(s)	64, 406, 878
RsaI	GTAC	4 cut(s)	38, 623, 995, 1113
RsaNI	GTAC	4 cut(s)	37, 622, 994, 1112
RseI	CAYNNNNRTG	3 cut(s)	140, 682, 810
SaqAI	TTAA	4 cut(s)	57, 162, 183, 350
SatI	GCNGC	4 cut(s)	5, 510, 762, 1104
Sau3AI	GATC	9 cut(s)	64, 120, 309, 406, 463, 674, 878, 1158, 1188
Sau96I	GGNCC	5 cut(s)	50, 341, 1051, 1227, 1228
SchI	GAGTC	2 cut(s)	201, 545
ScrFI	CCNGG	5 cut(s)	383, 402, 801, 895, 1066
SduI	GDGCHC	1 cut(s)	1231
SfaNI	GCATC	6 cut(s)	100, 132, 257, 370, 568, 1105
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	3 cut(s)	140, 682, 810
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	5 cut(s)	164, 236, 765, 791, 1120
SsiI	CCGC	2 cut(s)	459, 761
SspMI	CTAG	3 cut(s)	254, 672, 1107
StyD4I	CCNGG	5 cut(s)	381, 400, 799, 893, 1064
TaaI	ACNGT	6 cut(s)	152, 544, 633, 830, 1184, 1289
TaqI	TCGA	1 cut(s)	1258
TasI	AATT	5 cut(s)	164, 236, 765, 791, 1120
TatI	WGTACW	1 cut(s)	993
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	102, 187, 377
Tru1I	TTAA	4 cut(s)	57, 162, 183, 350
Tru9I	TTAA	4 cut(s)	57, 162, 183, 350
TscAI	CASTG	3 cut(s)	620, 689, 1168
TseFI	GTSAC	2 cut(s)	425, 719
TseI	GCWGC	3 cut(s)	4, 509, 1103
Tsp45I	GTSAC	2 cut(s)	425, 719
TspDTI	ATGAA	6 cut(s)	33, 39, 678, 841, 1019, 1292
TspGWI	ACGGA	4 cut(s)	891, 1080, 1233, 1260
TspRI	CASTG	3 cut(s)	620, 689, 1168
Van91I	CCANNNNNTGG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	341
XspI	CTAG	3 cut(s)	254, 672, 1107
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.