Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002898

Physical Location & Seq

Genomic Coordinates Reverse (-)

62931871 .. 62938682

Gene Structure 6812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2292 bp

ATGTGGAAGCTGAAAATTGGGGCAGACACAGTAAGAGAAGGTGGTGATCATCAATGCCTGAGGAGTGTGAACAATCACTTGGGACGCCAAGTTTGGGAGTACCATCCAGAGCTTGGGACCCCTGAAGAGCTTCAGCAAATCGAAGATGCTCGAAAAGGTTTCTGGGACAATCGATTTGAGACCAAGCACAGCTCTGATCTCCTCATGAGAATTCAGTTTGCAAAGGAGAACCCATGTGTGACTAATCTACCACAACTCAAAGTTAGAGATGCAGAAGAGGTGACAGACGAGGTCGTGGCAACCACATTACGCAGGGCCATTAATTTTTATTCAACAATCCAGGCACATGATGGTCATTGGCCTGGGGATTATGGGGGTCCCATGTTTCTACTTCCTGGTTTGGTTATTACACTTTCAATTACAGGAGCTCTAAATGCTGTGTTATCCATAGAGCATCAACGGGAGATGTGTAGATATCTCTATAATCATCAGAATAAAGATGGGGGATGGGGTCTACATATTGAGGGCCCAAGTACCATGTTTGGTACTGCACTAAATTATGTTAGTTTGAGGTTGCTTGGAGAAGGTGCTGATGATGGACAAGGGGCAATGGAAATAGCACGAAAATGGATATTAGACCATGGTGGTGCGACTGCAATCACTTCATGGGGGAAGATGTGGCTTTCAGTACTTGGGGCATATGAATGGTCTGGAAATAATCCACTACCGCCAGAAGTATGGCTATGTCCTTACTCTCTCCCAGTTCATCCAGGAAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCTATGTCTTATCTGTATGGGAAGAGATTCGTTGGACCAATTACACCTACAATCCAGTCATTGAGAAAGGAACTATATACAGTCCCATACCATGAAGTTGATTGGAATGAAGCTCGTAATCTATGTGCAAAGGAAGATCTATACTATCCACACCCAATGGTTCAGGATATTCTGTGGGCTTCTCTTCACTATGTACTTGAACCTGTTTTTATGCGTTGGCCGGCAAAAAGATTGAGGGAGAAGGCTTTGGACACTGTTATGCAGCACATTCACTATGAAGATGAAAATACTCGGTATATCTGCATTGGCCCTGTTAATAAGGTGTTAAATATGCTCTGTTGTTGGGCGGAGGATCCAAACTCAGAGGCATTCAAGTTGCATCTTCCAAGACTATATGATTATTTGTGGATCGCTGAAGATGGCATGAAAATGCAGGGCTACAATGGGAGCCAGGCATGGGATACTTCTTTTGCTGTGCAAGCAATAATATCTACTAACCTTGCTAAAGAATATGGACCTACTTTAAGAAAAGCACATGAATACATAAAAGATTCTCAGGTCTTAGAAGATTGTCCTGGTGATCTAAATTTTTGGTATCGACACATTTCAAAAGGTGCTTGGCCATTCTCAACTGCAGATCATGGATGGCCTATCTCTGACTGCACGGCGGAAGGACTGAAGGCTGGCTTATTACTATCAACACTTCCAACAGAAACAGTTGGGGAATCATTGGATATGAAGAAATTATATGATGCCGTTAATGTTACCCTTTCCTTACAGAATAATGATGGTGGATTTGCAACTTATGAATTGACTAGATCATATAAGTGGTTGGAGCTAATCAACCCTGCAGAAACTTTTGGTGACATTGTAATAGATTATCCATATGTTGAGTGTACTTCAGCAGCAATTCAAGCACTCACACTATTTAAGAAATTATATCCTGGACATAGGAGGGAAGAAATAGAAAACTGTATTGCTAATGCTGCAAAGTTCATTGAAAAGATACAAGCAACAGATGGCTCTTGGTATGGTTCTTGGGGAGTCTGCTTCACCTATGCTGGCTGGTTTGGAATAAAGGGTTTGGTTGCTGCTGGAAGGACTTATGAAGACTGCTCTAGCATCCGTAAAGCATGTGATTTTTTGTTATCCAAAGAGCTTGCTTCTGGTGGATGGGGAGAAAGTTATCTATCATGTCAGAACAAGGTGTATTCAAATCTTCAGGATAATAGGCCACATATAGTCAATACTGCATGGGCTATGTTGGCCCTGCTTGGTGCTGGGCAGGCAAAGAGAGACCCAACTCCATTGCACCGTGCAGCTAGGGTACTAATAAATTCTCAAATGGCAAATGGAGATTTTCCCCAGAAGGAGATCATGGGAGTTTTTAACAAGAACTGTATGATTAGCTATTCAGCATACCGAAACATTTTCCCCGTCTGGGCCCTTGGAGAATATCGTTGTCAGGTATTGGAGGCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

763

Amino Acids

86.65

Weight (kDa)

5.91

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	105 - 405	9.1e-38	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	419 - 756	1.3e-48	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07050 AT2G07050
fragaria_vesca	FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_6g36510 FvH4_6g36510
malus_domestica	MD00G1130000.v1.1 MD00G1220900.v1.1 MD13G1232100.v1.1 MD16G1237000.v1.1 MD17G1159900.v1.1 MD17G1245900.v1.1 MD17G1246400.v1.1
prunus_persica	Prupe.1G063400_v2.0.a1 Prupe.3G026100_v2.0.a1 Prupe.3G026100_v2.0.a1
pyrus_communis	pycom09g08550
rosa_chinensis	RchiOBHm_Chr2g0148711 RchiOBHm_Chr2g0148821 RchiOBHm_Chr2g0148951 RchiOBHm_Chr4g0397221
rosa_laevigata	RLG00000009438 RLG00000020359
rosa_multiflora	Rmu_sc0001796.1_g000004 Rmu_sc0002312.1_g000065 Rmu_sc0008532.1_g000008 Rmu_sc0017689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098550 Rroxscaffold_5G00342160
rosa_rugosa	Rorug03G0225900 Rorug03G0343900 Rorug03G0343900
rosa_samantha	Rh2AG467200 Rh2DG488900
rosa_wichuraiana	Rw2G038090 Rw4G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	3 cut(s)	728, 1154, 1475
AclWI	GGATC	3 cut(s)	1154, 1167, 1223
AcoI	YGGCCR	2 cut(s)	1025, 1427
AcsI	RAATTY	3 cut(s)	210, 1393, 2143
AcuI	CTGAAG	6 cut(s)	116, 144, 1242, 1505, 1692, 2012
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	7 cut(s)	101, 535, 547, 690, 1002, 1705, 2136
AfiI	CCNNNNNNNGG	4 cut(s)	94, 113, 1264, 2248
AgsI	TTSAA	8 cut(s)	333, 417, 1007, 1180, 1416, 1721, 1808, 2022
AjnI	CCWGG	7 cut(s)	339, 361, 394, 769, 1257, 1381, 1750
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	173, 2097
AlwI	GGATC	3 cut(s)	1154, 1167, 1223
ApaI	GGGCCC	2 cut(s)	530, 2254
ApeKI	GCWGC	5 cut(s)	1069, 1712, 1793, 1898, 2126
ApoI	RAATTY	3 cut(s)	210, 1393, 2143
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 158, 190
AseI	ATTAAT	1 cut(s)	321
Asp700I	GAANNNNTTC	2 cut(s)	129, 833
AsuHPI	GGTGA	5 cut(s)	56, 292, 1397, 1682, 1852
AvaII	GGWCC	4 cut(s)	117, 377, 842, 1322
AxyI	CCTNAGG	1 cut(s)	59
BaeGI	GKGCMC	2 cut(s)	530, 2254
BalI	TGGCCA	1 cut(s)	1429
BamHI	GGATCC	1 cut(s)	1159
BanII	GRGCYC	3 cut(s)	430, 530, 2254
BbsI	GAAGAC	1 cut(s)	1923
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	5 cut(s)	1081, 1724, 1780, 1885, 2138
BceAI	ACGGC	2 cut(s)	1488, 1547
BciT130I	CCWGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
BciVI	GTATCC	1 cut(s)	1261
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	173, 2097
BfaI	CTAG	3 cut(s)	1623, 1926, 2130
BfmI	CTRYAG	2 cut(s)	1440, 1656
BfuI	GTATCC	1 cut(s)	1261
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	5 cut(s)	1070, 1713, 1794, 1899, 2127
BlsI	GCNGC	5 cut(s)	1071, 1714, 1795, 1900, 2128
BmcAI	AGTACT	1 cut(s)	690
Bme1390I	CCNGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
Bme18I	GGWCC	4 cut(s)	117, 377, 842, 1322
BmiI	GGNNCC	8 cut(s)	118, 119, 378, 379, 528, 1161, 1256, 2252
BmrFI	CCNGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	6 cut(s)	136, 259, 463, 1195, 1549, 1938
BmuI	ACTGGG	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	1923
Bsa29I	ATCGAT	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	85
BsaI	GGTCTC	2 cut(s)	173, 2097
BsaJI	CCNNGG	3 cut(s)	362, 640, 2254
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 113, 1264, 2248
Bse118I	RCCGGY	1 cut(s)	1027
Bse1I	ACTGG	2 cut(s)	761, 862
Bse21I	CCTNAGG	1 cut(s)	59
Bse3DI	GCAATG	2 cut(s)	615, 2114
BseBI	CCWGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	362, 640, 2254
BseGI	GGATG	7 cut(s)	103, 512, 766, 783, 1457, 1929, 1985
BseLI	CCNNNNNNNGG	4 cut(s)	94, 113, 1264, 2248
BseMI	GCAATG	2 cut(s)	615, 2114
BseMII	CTCAG	3 cut(s)	50, 1182, 1376
BseNI	ACTGG	2 cut(s)	761, 862
BseRI	GAGGAG	2 cut(s)	76, 191
BseSI	GKGCMC	2 cut(s)	530, 2254
BseXI	GCAGC	5 cut(s)	1081, 1724, 1780, 1885, 2138
BseYI	CCCAGC	1 cut(s)	2087
BsgI	GTGCAG	3 cut(s)	534, 1453, 2145
BshVI	ATCGAT	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	1028
BslFI	GGGAC	5 cut(s)	96, 130, 179, 363, 875
BslI	CCNNNNNNNGG	4 cut(s)	94, 113, 1264, 2248
BsmAI	GTCTC	2 cut(s)	173, 2097
BsmFI	GGGAC	5 cut(s)	96, 130, 179, 363, 875
BsmI	GAATGC	1 cut(s)	1175
Bso31I	GGTCTC	2 cut(s)	173, 2097
Bsp120I	GGGCCC	2 cut(s)	526, 2250
Bsp1286I	GDGCHC	3 cut(s)	430, 530, 2254
Bsp143I	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	3 cut(s)	728, 1154, 1475
BspCNI	CTCAG	3 cut(s)	51, 1181, 1375
BspDI	ATCGAT	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	8 cut(s)	118, 119, 378, 379, 528, 1161, 1256, 2252
BspMAI	CTGCAG	2 cut(s)	1444, 1660
BspPI	GGATC	3 cut(s)	1154, 1167, 1223
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	2 cut(s)	173, 2097
BsrDI	GCAATG	2 cut(s)	615, 2114
BsrFI	RCCGGY	1 cut(s)	1027
BsrI	ACTGG	2 cut(s)	761, 862
BssAI	RCCGGY	1 cut(s)	1027
BssECI	CCNNGG	3 cut(s)	362, 640, 2254
BssMI	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
BssNI	GRCGYC	1 cut(s)	85
BssT1I	CCWWGG	2 cut(s)	640, 2254
Bst2UI	CCWGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
Bst4CI	ACNGT	7 cut(s)	31, 889, 1063, 1525, 1781, 2123, 2207
Bst6I	CTCTTC	4 cut(s)	120, 270, 824, 996
BstACI	GRCGYC	1 cut(s)	85
BstC8I	GCNNGC	6 cut(s)	1029, 1287, 1492, 1870, 1968, 2094
BstDEI	CTNAG	4 cut(s)	59, 1168, 1362, 1369
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	7 cut(s)	103, 512, 766, 783, 1457, 1929, 1985
BstKTI	GATC	9 cut(s)	49, 199, 946, 1162, 1218, 1390, 1447, 1628, 2184
BstMAI	GTCTC	2 cut(s)	173, 2097
BstMBI	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
BstMWI	GCNNNNNNNGC	6 cut(s)	434, 1286, 1721, 1793, 2072, 2093
BstNI	CCWGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
BstNSI	RCATGY	1 cut(s)	1944
BstSCI	CCNGG	7 cut(s)	339, 361, 394, 769, 1257, 1381, 1750
BstSFI	CTRYAG	2 cut(s)	1440, 1656
BstSLI	GKGCMC	2 cut(s)	530, 2254
BstV1I	GCAGC	5 cut(s)	1081, 1724, 1780, 1885, 2138
BstV2I	GAAGAC	1 cut(s)	1923
BstX2I	RGATCY	2 cut(s)	943, 1159
BstXI	CCANNNNNNTGG	1 cut(s)	738
BstYI	RGATCY	2 cut(s)	943, 1159
Bsu15I	ATCGAT	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	1261
BsuTUI	ATCGAT	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	7 cut(s)	103, 512, 766, 783, 1457, 1929, 1985
BtsIMutI	CAGTG	1 cut(s)	1059
Cac8I	GCNNGC	6 cut(s)	1029, 1287, 1492, 1870, 1968, 2094
CciI	TCATGA	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	1027
ClaI	ATCGAT	1 cut(s)	172
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	7 cut(s)	100, 534, 546, 689, 1001, 1704, 2135
CviQI	GTAC	7 cut(s)	100, 534, 546, 689, 1001, 1704, 2135
DdeI	CTNAG	4 cut(s)	59, 1168, 1362, 1369
DpnI	GATC	9 cut(s)	48, 198, 945, 1161, 1217, 1389, 1446, 1627, 2183
DpnII	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
EaeI	YGGCCR	2 cut(s)	1025, 1427
Eam1104I	CTCTTC	4 cut(s)	120, 270, 824, 996
EarI	CTCTTC	4 cut(s)	120, 270, 824, 996
EciI	GGCGGA	2 cut(s)	1169, 1490
Ecl136II	GAGCTC	1 cut(s)	428
Eco130I	CCWWGG	2 cut(s)	640, 2254
Eco24I	GRGCYC	3 cut(s)	430, 530, 2254
Eco31I	GGTCTC	2 cut(s)	173, 2097
Eco32I	GATATC	1 cut(s)	476
Eco47I	GGWCC	4 cut(s)	117, 377, 842, 1322
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	6 cut(s)	116, 144, 1242, 1505, 1692, 2012
Eco81I	CCTNAGG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	428
EcoO109I	RGGNCCY	5 cut(s)	117, 377, 526, 2251, 2284
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	7 cut(s)	339, 361, 394, 769, 1257, 1381, 1750
EcoRV	GATATC	1 cut(s)	476
EcoT14I	CCWWGG	2 cut(s)	640, 2254
EcoT38I	GRGCYC	3 cut(s)	430, 530, 2254
ErhI	CCWWGG	2 cut(s)	640, 2254
FalI	AAGNNNNNCTT	2 cut(s)	1478, 1510
FaqI	GGGAC	5 cut(s)	96, 130, 179, 363, 875
FauNDI	CATATG	2 cut(s)	700, 1693
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	5 cut(s)	1070, 1713, 1794, 1899, 2127
FokI	GGATG	7 cut(s)	90, 519, 753, 790, 1464, 1916, 1992
FriOI	GRGCYC	3 cut(s)	430, 530, 2254
Fsp4HI	GCNGC	5 cut(s)	1070, 1713, 1794, 1899, 2127
FspBI	CTAG	3 cut(s)	1623, 1926, 2130
GluI	GCNGC	5 cut(s)	1070, 1713, 1794, 1899, 2127
GsaI	CCCAGC	1 cut(s)	2091
HapII	CCGG	1 cut(s)	1028
HgaI	GACGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	834, 1358, 1532, 1851
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	5 cut(s)	56, 292, 1397, 1682, 1852
Hpy166II	GTNNAC	3 cut(s)	70, 515, 1704
Hpy188I	TCNGA	6 cut(s)	196, 492, 1171, 1465, 2007, 2291
Hpy188III	TCNNGA	5 cut(s)	107, 205, 711, 971, 2030
Hpy8I	GTNNAC	3 cut(s)	70, 515, 1704
HpyAV	CCTTC	8 cut(s)	32, 578, 768, 1042, 1472, 1480, 1899, 2170
HpyCH4III	ACNGT	7 cut(s)	31, 889, 1063, 1525, 1781, 2123, 2207
HpyF10VI	GCNNNNNNNGC	6 cut(s)	434, 1286, 1721, 1793, 2072, 2093
HpyF3I	CTNAG	4 cut(s)	59, 1168, 1362, 1369
Hsp92I	GRCGYC	1 cut(s)	85
KflI	GGGWCCC	2 cut(s)	117, 377
KroI	GCCGGC	1 cut(s)	1027
KroNI	GCCGGC	1 cut(s)	1029
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	3 cut(s)	425, 1254, 1642
Lsp1109I	GCAGC	5 cut(s)	1081, 1724, 1780, 1885, 2138
LweI	GCATC	6 cut(s)	136, 259, 463, 1195, 1549, 1938
MaeI	CTAG	3 cut(s)	1623, 1926, 2130
MaeIII	GTNAC	4 cut(s)	238, 280, 1570, 1670
MalI	GATC	9 cut(s)	48, 198, 945, 1161, 1217, 1389, 1446, 1627, 2183
MboI	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
MflI	RGATCY	2 cut(s)	943, 1159
MhlI	GDGCHC	3 cut(s)	430, 530, 2254
MlsI	TGGCCA	1 cut(s)	1429
MluNI	TGGCCA	1 cut(s)	1429
MlyI	GAGTC	1 cut(s)	1860
MmeI	TCCRAC	3 cut(s)	820, 1538, 1620
Mox20I	TGGCCA	1 cut(s)	1429
MroNI	GCCGGC	1 cut(s)	1027
MroXI	GAANNNNTTC	2 cut(s)	129, 833
MscI	TGGCCA	1 cut(s)	1429
MseI	TTAA	7 cut(s)	321, 1122, 1133, 1331, 1566, 1737, 2196
MslI	CAYNNNNRTG	6 cut(s)	625, 645, 703, 1064, 1235, 1633
Msp20I	TGGCCA	1 cut(s)	1429
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
Mva1269I	GAATGC	1 cut(s)	1175
MvaI	CCWGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
MwoI	GCNNNNNNNGC	6 cut(s)	434, 1286, 1721, 1793, 2072, 2093
NaeI	GCCGGC	1 cut(s)	1029
NcoI	CCATGG	1 cut(s)	640
NdeI	CATATG	2 cut(s)	700, 1693
NdeII	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
NgoMIV	GCCGGC	1 cut(s)	1027
NlaIV	GGNNCC	8 cut(s)	118, 119, 378, 379, 528, 1161, 1256, 2252
NmuCI	GTSAC	3 cut(s)	238, 280, 1670
NspI	RCATGY	1 cut(s)	1944
PagI	TCATGA	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	120
PctI	GAATGC	1 cut(s)	1175
PdiI	GCCGGC	1 cut(s)	1029
PdmI	GAANNNNTTC	2 cut(s)	129, 833
PfeI	GAWTC	3 cut(s)	834, 1358, 1532
PflFI	GACNNNGTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	113
PfoI	TCCNGGA	2 cut(s)	769, 1750
PkrI	GCNGC	5 cut(s)	1071, 1714, 1795, 1900, 2128
PleI	GAGTC	1 cut(s)	1859
PpsI	GAGTC	1 cut(s)	1859
PpuMI	RGGWCCY	2 cut(s)	117, 377
PshBI	ATTAAT	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	430
Psp5II	RGGWCCY	2 cut(s)	117, 377
Psp6I	CCWGG	7 cut(s)	339, 361, 394, 769, 1257, 1381, 1750
PspFI	CCCAGC	1 cut(s)	2087
PspGI	CCWGG	7 cut(s)	339, 361, 394, 769, 1257, 1381, 1750
PspN4I	GGNNCC	8 cut(s)	118, 119, 378, 379, 528, 1161, 1256, 2252
PspOMI	GGGCCC	2 cut(s)	526, 2250
PspPPI	RGGWCCY	2 cut(s)	117, 377
PstI	CTGCAG	2 cut(s)	1444, 1660
PsuI	RGATCY	2 cut(s)	943, 1159
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	7 cut(s)	101, 535, 547, 690, 1002, 1705, 2136
RsaNI	GTAC	7 cut(s)	100, 534, 546, 689, 1001, 1704, 2135
RseI	CAYNNNNRTG	6 cut(s)	625, 645, 703, 1064, 1235, 1633
SacI	GAGCTC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	7 cut(s)	321, 1122, 1133, 1331, 1566, 1737, 2196
SatI	GCNGC	5 cut(s)	1070, 1713, 1794, 1899, 2127
Sau3AI	GATC	9 cut(s)	46, 196, 943, 1159, 1215, 1387, 1444, 1625, 2181
ScaI	AGTACT	1 cut(s)	690
SchI	GAGTC	1 cut(s)	1860
ScrFI	CCNGG	7 cut(s)	341, 363, 396, 771, 1259, 1383, 1752
SduI	GDGCHC	3 cut(s)	430, 530, 2254
SfaNI	GCATC	6 cut(s)	136, 259, 463, 1195, 1549, 1938
SfcI	CTRYAG	2 cut(s)	1440, 1656
SinI	GGWCC	4 cut(s)	117, 377, 842, 1322
SmiMI	CAYNNNNRTG	6 cut(s)	625, 645, 703, 1064, 1235, 1633
SsiI	CCGC	3 cut(s)	728, 1154, 1475
SspMI	CTAG	3 cut(s)	1623, 1926, 2130
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	7 cut(s)	339, 361, 394, 769, 1257, 1381, 1750
StyI	CCWWGG	2 cut(s)	640, 2254
TaaI	ACNGT	7 cut(s)	31, 889, 1063, 1525, 1781, 2123, 2207
TaqI	TCGA	5 cut(s)	141, 151, 172, 793, 1405
TatI	WGTACW	3 cut(s)	688, 1000, 1703
TfiI	GAWTC	3 cut(s)	834, 1358, 1532
Tru1I	TTAA	7 cut(s)	321, 1122, 1133, 1331, 1566, 1737, 2196
Tru9I	TTAA	7 cut(s)	321, 1122, 1133, 1331, 1566, 1737, 2196
TscAI	CASTG	1 cut(s)	1066
TseFI	GTSAC	3 cut(s)	238, 280, 1670
TseI	GCWGC	5 cut(s)	1069, 1712, 1793, 1898, 2126
Tsp45I	GTSAC	3 cut(s)	238, 280, 1670
TspGWI	ACGGA	1 cut(s)	1922
TspRI	CASTG	1 cut(s)	1066
Tth111I	GACNNNGTC	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	4 cut(s)	117, 377, 842, 1322
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	3 cut(s)	210, 1393, 2143
XceI	RCATGY	1 cut(s)	1944
XcmI	CCANNNNNNNNNTGG	3 cut(s)	110, 347, 777
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	2 cut(s)	129, 833
XspI	CTAG	3 cut(s)	1623, 1926, 2130
ZrmI	AGTACT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.