Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004429

Physical Location & Seq

Genomic Coordinates Reverse (-)

32062559 .. 32067577

Gene Structure 5019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1260100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATTCTCCAAACGACATTCCTCGGCCCCCTCTCTCTGGTCCTCGTGCTCTGCTCACAGGCTCCGTCCTCTTCTGTTCTCCAAACGGCGTCGTCGCGCCATTCTTGTTCTGTTTCAGTTGCTGCTTCCGAGAATGGTGTGTTTACGTCTCCAGAGATTGCAAAGACCTTTGATTTTACTTCAGAAGAGCGGATATACAATTGGTGGGAGTCTCAAGGTTATTTTAGGCCACACCTTGACCGAGGAAGTGATCCTTTTGTAATCTCAATGCCGCCTCCAAATGTTACTGGTTCTCTACATATGGGGCATGCGATGTTTGTGACTCTTGAGGACATTATGGTTAGATATCATCGGATGAAGGGGAAACCAACACTTTGGCTTCCTGGGACTGACCATGCTGGTATAGCAACTCAGCTGGTTGTGGAAAAAATGCTTGCTTCTGAAGGAATTAGAAGGGTTGACTTGGGTCGAGATGAGTTTGTGAGTAAAGTTTGGGAGTGGAAAGAGAAGTATGGTGGAACCATCATAAATCAGATCAAAAGACTTGGTGCTTCTTGTGATTGGAATAGAGAGCATTTCACCCTTGATGAACAGTTAAGTCGTGCTGTTATAGAGGCCTTTGTCAGACTTCATGAGAAAGGTTTAATCTATCAAGGAAATACTAGAATTTGTACCCGCGCGTTGCTGCGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

232

Amino Acids

26.1

Weight (kDa)

7.09

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	65 - 221	4.6e-57	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	87 - 143	2.1e-08	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16715
fragaria_vesca	FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130
malus_domestica	MD05G1034800.v1.1 MD09G1264300.v1.1 MD09G1264400.v1.1 MD17G1258800.v1.1 MD17G1259600.v1.1 MD17G1259800.v1.1 MD17G1260100.v1.1
prunus_persica	Prupe.3G161900_v2.0.a1 Prupe.3G162000_v2.0.a1
pyrus_communis	pycom09g17800 pycom17g26100
rosa_chinensis	RchiOBHm_Chr1g0328051
rosa_laevigata	RLG00000029942
rosa_multiflora	Rmu_sc0001829.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321900
rosa_rugosa	Rorug01G0073400
rosa_samantha	Rh1AG090500 Rh1BG072400 Rh1CG087100 Rh1DG093800
rosa_wichuraiana	Rw1G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccII	CGCG	3 cut(s)	97, 678, 680
AciI	CCGC	4 cut(s)	190, 272, 676, 688
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	666
AcuI	CTGAAG	2 cut(s)	165, 462
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	153, 216
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	25, 227, 615
ApeKI	GCWGC	2 cut(s)	122, 685
ApoI	RAATTY	1 cut(s)	666
AspLEI	GCGC	2 cut(s)	99, 680
AspS9I	GGNCC	2 cut(s)	26, 40
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	109, 672
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	153, 216
BfaI	CTAG	1 cut(s)	663
BisI	GCNGC	3 cut(s)	123, 272, 686
BlsI	GCNGC	3 cut(s)	124, 273, 687
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	26, 40
BmiI	GGNNCC	3 cut(s)	28, 63, 520
BmrFI	CCNGG	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	198, 347
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	22, 241, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	22, 241, 383
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	109, 672
Bsh1236I	CGCG	3 cut(s)	97, 678, 680
BshFI	GGCC	3 cut(s)	27, 229, 617
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	153, 216
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	27, 229, 617
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	250, 534
BspACI	CCGC	4 cut(s)	190, 272, 676, 688
BspANI	GGCC	3 cut(s)	27, 229, 617
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	3 cut(s)	97, 678, 680
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	3 cut(s)	28, 63, 520
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	22, 241, 383
BssMI	GATC	2 cut(s)	250, 534
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	76, 180
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	309, 435
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	3 cut(s)	97, 678, 680
BstHHI	GCGC	2 cut(s)	99, 680
BstKTI	GATC	2 cut(s)	253, 537
BstMAI	GTCTC	2 cut(s)	153, 216
BstMBI	GATC	2 cut(s)	250, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	382
BstUI	CGCG	3 cut(s)	97, 678, 680
BstV1I	GCAGC	2 cut(s)	109, 672
BstXI	CCANNNNNNTGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	27, 229, 617
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	309, 435
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	2 cut(s)	99, 680
Cfr13I	GGNCC	2 cut(s)	26, 40
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	3 cut(s)	308, 395, 632
CviJI	RGCY	6 cut(s)	27, 62, 229, 379, 415, 617
CviKI_1	RGCY	6 cut(s)	27, 62, 229, 379, 415, 617
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	2 cut(s)	252, 536
DpnII	GATC	2 cut(s)	250, 534
Eam1104I	CTCTTC	2 cut(s)	76, 180
EarI	CTCTTC	2 cut(s)	76, 180
Eco147I	AGGCCT	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	165, 462
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	3 cut(s)	311, 398, 635
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	307, 394, 631
FauI	CCCGC	2 cut(s)	681, 683
FauNDI	CATATG	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	123, 272, 686
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	3 cut(s)	123, 272, 686
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	98, 679
GluI	GCNGC	3 cut(s)	123, 272, 686
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	27, 229, 617
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	2 cut(s)	99, 680
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	311, 398, 635
Hin6I	GCGC	2 cut(s)	97, 678
HinP1I	GCGC	2 cut(s)	97, 678
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	4, 209, 322
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	144, 460
Hpy188I	TCNGA	6 cut(s)	130, 184, 354, 442, 534, 626
Hpy188III	TCNNGA	4 cut(s)	152, 326, 470, 632
Hpy8I	GTNNAC	2 cut(s)	144, 460
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyAV	CCTTC	3 cut(s)	352, 437, 447
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	311, 398, 635
HspAI	GCGC	2 cut(s)	97, 678
Kzo9I	GATC	2 cut(s)	250, 534
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	23, 44, 165, 273, 369, 384, 396, 401
Lsp1109I	GCAGC	2 cut(s)	109, 672
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	283, 319
MalI	GATC	2 cut(s)	252, 536
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	2 cut(s)	250, 534
MboII	GAAGA	2 cut(s)	63, 197
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	3 cut(s)	199, 447, 666
MlyI	GAGTC	2 cut(s)	218, 316
MnlI	CCTC	8 cut(s)	32, 41, 53, 79, 236, 285, 322, 607
MseI	TTAA	3 cut(s)	596, 644, 694
MspA1I	CMGCKG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	3 cut(s)	97, 678, 680
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	2 cut(s)	250, 534
NlaIII	CATG	3 cut(s)	311, 398, 635
NlaIV	GGNNCC	3 cut(s)	28, 63, 520
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	124, 273, 687
PleI	GAGTC	2 cut(s)	217, 316
PpsI	GAGTC	2 cut(s)	217, 316
PshAI	GACNNNNGTC	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	28, 63, 520
PspPI	GGNCC	2 cut(s)	26, 40
PstNI	CAGNNNCTG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	596, 644, 694
SatI	GCNGC	3 cut(s)	123, 272, 686
Sau3AI	GATC	2 cut(s)	250, 534
Sau96I	GGNCC	2 cut(s)	26, 40
SchI	GAGTC	2 cut(s)	218, 316
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	149, 170, 220, 237, 417, 643
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	213, 326
SmoI	CTYRAG	2 cut(s)	213, 326
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	3 cut(s)	199, 447, 666
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	4 cut(s)	190, 272, 676, 688
SspMI	CTAG	1 cut(s)	663
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	594
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	469
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	199, 447, 666
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	596, 644, 694
Tru9I	TTAA	3 cut(s)	596, 644, 694
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	122, 685
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	371, 603, 620
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	666
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.