Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004429

Physical Location & Seq

Genomic Coordinates Reverse (-)

11935652 .. 11936005

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0073400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAGGAAGACTGAGCAGCGTGACGTCCAAAATCATGGGCGGAAATGGCGTCGTCCACTGTTCCGTCACATTCTTTCTTCAACTTCGCGTCGACAAACACATCGTCCCTGACAGACCCCTCCCTGTCAACGACGAGCTCGTCTGGGACAACGGCACGCCGTTTCCCAAACCTTATATTGATCGCATAGCCGACACCGTCGGAAAGTATGAAGCTTTGGCTTGGCTGACTGGAGGTCTGAGCTACTTCGTTGGGCTGGGCTTGTTGGCTGTGTGGAATGACAAGGCGTCCAAAATTCCGTTTGCCCCAAAAGTGTACCCATATGATCAAGAATCTACGAGTGGAGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

7.85

Isoelectric Point (pI)

24.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16715
fragaria_vesca	FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130
malus_domestica	MD05G1034800.v1.1 MD09G1264300.v1.1 MD09G1264400.v1.1 MD17G1258800.v1.1 MD17G1259600.v1.1 MD17G1259800.v1.1 MD17G1260100.v1.1
prunus_persica	Prupe.3G161900_v2.0.a1 Prupe.3G162000_v2.0.a1
pyrus_communis	pycom09g17800 pycom17g26100
rosa_chinensis	RchiOBHm_Chr1g0328051
rosa_laevigata	RLG00000029942
rosa_multiflora	Rmu_sc0001829.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321900
rosa_rugosa	Rorug01G0073400
rosa_samantha	Rh1AG090500 Rh1BG072400 Rh1CG087100 Rh1DG093800
rosa_wichuraiana	Rw1G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	294
AcyI	GRCGYC	3 cut(s)	26, 51, 287
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	83
AhdI	GACNNNNNGTC	2 cut(s)	234, 286
AluBI	AGCT	4 cut(s)	139, 215, 243, 347
AluI	AGCT	4 cut(s)	139, 215, 243, 347
Alw21I	GWGCWC	2 cut(s)	141, 349
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	294
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
BanII	GRGCYC	2 cut(s)	141, 349
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	141, 349
BbvI	GCAGC	1 cut(s)	30
BceAI	ACGGC	2 cut(s)	145, 169
BclI	TGATCA	1 cut(s)	325
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmeRI	GACNNNNNGTC	2 cut(s)	234, 286
BpiI	GAAGAC	1 cut(s)	16
BplI	GAGNNNNNCTC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	252
BsaHI	GRCGYC	3 cut(s)	26, 51, 287
Bse1I	ACTGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	5, 230
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	141, 349
BslFI	GGGAC	2 cut(s)	92, 161
BsmFI	GGGAC	2 cut(s)	92, 161
Bsp1286I	GDGCHC	2 cut(s)	141, 349
Bsp143I	GATC	2 cut(s)	181, 325
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	6, 231
BspFNI	CGCG	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	181, 325
BssNI	GRCGYC	3 cut(s)	26, 51, 287
Bst4CI	ACNGT	2 cut(s)	62, 199
BstACI	GRCGYC	3 cut(s)	26, 51, 287
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	14, 239
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	184, 328
BstMBI	GATC	2 cut(s)	181, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	158
CseI	GACGC	3 cut(s)	40, 79, 276
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	14, 239
DpnI	GATC	2 cut(s)	183, 327
DpnII	GATC	2 cut(s)	181, 325
DrdI	GACNNNNNNGTC	1 cut(s)	140
DriI	GACNNNNNGTC	2 cut(s)	234, 286
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1105I	GACNNNNNGTC	2 cut(s)	234, 286
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	139, 347
Eco24I	GRGCYC	2 cut(s)	141, 349
Eco53kI	GAGCTC	2 cut(s)	139, 347
EcoICRI	GAGCTC	2 cut(s)	139, 347
EcoT38I	GRGCYC	2 cut(s)	141, 349
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	38, 177, 188, 210, 322, 324
FaqI	GGGAC	2 cut(s)	92, 161
FatI	CATG	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	2 cut(s)	141, 349
Fsp4HI	GCNGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	252
HgaI	GACGC	3 cut(s)	40, 79, 276
Hin1I	GRCGYC	3 cut(s)	26, 51, 287
Hin1II	CATG	1 cut(s)	40
HincII	GTYRAC	2 cut(s)	94, 130
HindII	GTYRAC	2 cut(s)	94, 130
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	1 cut(s)	332
Hpy166II	GTNNAC	4 cut(s)	58, 94, 130, 316
Hpy188I	TCNGA	2 cut(s)	203, 240
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	4 cut(s)	58, 94, 130, 316
Hpy99I	CGWCG	4 cut(s)	56, 95, 137, 203
HpyCH4III	ACNGT	2 cut(s)	62, 199
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	14, 239
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	3 cut(s)	26, 51, 287
Hsp92II	CATG	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	181, 325
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	123, 130, 138, 216, 242
Lsp1109I	GCAGC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	22, 67
MalI	GATC	2 cut(s)	183, 327
MboI	GATC	2 cut(s)	181, 325
MboII	GAAGA	2 cut(s)	21, 71
MhlI	GDGCHC	2 cut(s)	141, 349
MluCI	AATT	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	131, 227
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	181, 325
NlaIII	CATG	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	22, 67
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	141, 349
PspFI	CCCAGC	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	2 cut(s)	141, 349
SalI	GTCGAC	1 cut(s)	92
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	181, 325
SduI	GDGCHC	2 cut(s)	141, 349
SetI	ASST	7 cut(s)	29, 141, 175, 217, 238, 245, 349
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	1 cut(s)	42
SstI	GAGCTC	2 cut(s)	141, 349
TaaI	ACNGT	2 cut(s)	62, 199
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	2 cut(s)	22, 67
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	2 cut(s)	22, 67
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	55, 288
TspRI	CASTG	1 cut(s)	65
Tth111I	GACNNNGTC	1 cut(s)	197
XapI	RAATTY	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.