Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004429

Physical Location & Seq

Genomic Coordinates Reverse (-)

18090309 .. 18095481

Gene Structure 5173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

GCCGCCTCCGAGAATGGCGTGTTCACTTCTCCCGAGATTGCAAAGACCTTTGATTTTACTTCAGAAGAAGGGATATACAATTGGTGGGAGTCTCAAGGGTATTTTAGGCCAAACCTTGACCGAGGAAGTGATCCTTTTGTGATTTCAATGCCGCCTCCAAATGTTACTGGTTCCCTGCACATGGGACACGCGATGTTTGTGACTCTTGAGGACATTATGGTTAGATACCATCGAATGAAGGGAAGACCCACACTTTGGCTTCCTGGGACTGATCATGCTGGTATAGCAACTCAGCTGGTTGTAGAAAAAATGCTTGCATCTGAAGGAATTAAAAGGGTTGAATTGGGTCGAGATGAGTTTGTGAATCGAGTTTGGGAGTGGAAAGAGAAGTATGGTGGAACCATTACAAATCAGATCAAAAGACTTGGCGCTTCTTGTGATTGGAATAGAGAGCATTTCACCCTTGATGAACAGCTAAGTCGTAAGGCATTTTTCTATCTGGTTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

171

Amino Acids

19.58

Weight (kDa)

5.75

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16715
fragaria_vesca	FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130
malus_domestica	MD05G1034800.v1.1 MD09G1264300.v1.1 MD09G1264400.v1.1 MD17G1258800.v1.1 MD17G1259600.v1.1 MD17G1259800.v1.1 MD17G1260100.v1.1
prunus_persica	Prupe.3G161900_v2.0.a1 Prupe.3G162000_v2.0.a1
pyrus_communis	pycom09g17800 pycom17g26100
rosa_chinensis	RchiOBHm_Chr1g0328051
rosa_laevigata	RLG00000029942
rosa_multiflora	Rmu_sc0001829.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321900
rosa_rugosa	Rorug01G0073400
rosa_samantha	Rh1AG090500 Rh1BG072400 Rh1CG087100 Rh1DG093800
rosa_wichuraiana	Rw1G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	3, 152
AclWI	GGATC	1 cut(s)	125
AcuI	CTGAAG	2 cut(s)	45, 342
AfiI	CCNNNNNNNGG	2 cut(s)	181, 255
AgsI	TTSAA	3 cut(s)	147, 341, 506
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	295, 475
AluI	AGCT	2 cut(s)	295, 475
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	250
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	511
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	2 cut(s)	3, 152
BlsI	GCNGC	2 cut(s)	4, 153
Bme1390I	CCNGG	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	172, 400
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	250
BpuEI	CTTGAG	2 cut(s)	78, 227
BsaJI	CCNNGG	2 cut(s)	121, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 255
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	121, 263
BseLI	CCNNNNNNNGG	2 cut(s)	181, 255
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	198, 280
BslI	CCNNNNNNNGG	2 cut(s)	181, 255
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	198, 280
BsnI	GGCC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	130, 271, 414
BspACI	CCGC	2 cut(s)	3, 152
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	172, 400
BspPI	GGATC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	121, 263
BssMI	GATC	3 cut(s)	130, 271, 414
Bst2UI	CCWGG	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	291, 476
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	3 cut(s)	133, 274, 417
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	130, 271, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	431
CviAII	CATG	2 cut(s)	181, 275
CviJI	RGCY	4 cut(s)	109, 259, 295, 475
CviKI_1	RGCY	4 cut(s)	109, 259, 295, 475
DdeI	CTNAG	2 cut(s)	291, 476
DpnI	GATC	3 cut(s)	132, 273, 416
DpnII	GATC	3 cut(s)	130, 271, 414
Eco57I	CTGAAG	2 cut(s)	45, 342
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	184, 278
FaiI	YATR	6 cut(s)	76, 182, 218, 276, 284, 393
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	2 cut(s)	198, 280
FatI	CATG	2 cut(s)	180, 274
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	3, 152
Fsp4HI	GCNGC	2 cut(s)	3, 152
FspBI	CTAG	1 cut(s)	511
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	3, 152
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	184, 278
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HinfI	GANTC	3 cut(s)	89, 202, 364
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	10, 64, 322, 414
Hpy188III	TCNNGA	3 cut(s)	32, 206, 350
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	62, 232, 317
HpyCH4V	TGCA	3 cut(s)	41, 178, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	291, 476
Hsp92II	CATG	2 cut(s)	184, 278
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	130, 271, 414
LpnPI	CCDG	7 cut(s)	153, 188, 249, 264, 276, 281, 485
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	511
MaeIII	GTNAC	2 cut(s)	163, 199
MalI	GATC	3 cut(s)	132, 273, 416
MboI	GATC	3 cut(s)	130, 271, 414
MboII	GAAGA	2 cut(s)	77, 255
MfeI	CAATTG	1 cut(s)	79
MluCI	AATT	3 cut(s)	79, 327, 341
MlyI	GAGTC	2 cut(s)	98, 196
MnlI	CCTC	4 cut(s)	16, 116, 165, 202
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	130, 271, 414
NlaIII	CATG	2 cut(s)	184, 278
NlaIV	GGNNCC	2 cut(s)	172, 400
NmuCI	GTSAC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	4, 153
PleI	GAGTC	2 cut(s)	97, 196
PpsI	GAGTC	2 cut(s)	97, 196
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	172, 400
PvuII	CAGCTG	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	3, 152
Sau3AI	GATC	3 cut(s)	130, 271, 414
SchI	GAGTC	2 cut(s)	98, 196
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	4 cut(s)	50, 117, 297, 477
SfaNI	GCATC	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	93, 206
SmoI	CTYRAG	2 cut(s)	93, 206
Sse9I	AATT	3 cut(s)	79, 327, 341
SsiI	CCGC	2 cut(s)	3, 152
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	262
TaqI	TCGA	3 cut(s)	232, 349, 367
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	79, 327, 341
TauI	GCSGC	2 cut(s)	5, 154
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	251, 483
Van91I	CCANNNNNTGG	1 cut(s)	255
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.