Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004429

Physical Location & Seq

Genomic Coordinates Forward (+)

17700335 .. 17720882

Gene Structure 20548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGATTCTCCAAACCACCTTCTCCGCCCCGTCGCTTCTTTTCTCCTCCTGCTCTCCTCATCGCCTCAGGTTCCATCCTCTTCTCTTCCCCAAACGACGCCGCCGCGCCGTTATGCCCTCACTCTTCACCACTCCTCGTTGCGTTTCAGTTGCTGCTGCTGCCGCCTCCGACAACGGCGTCTTCACTTCTCCGGAGACTGCCAAGTCCTTTGATTTTACTAATGAAGAGAGGATTTACACCTGGTGGGAGTCTCGGGGATATTTCAGACCAAGCTTTGACCGAGGAAGCGATCCTTTTGTGATTTCGATGCCACCTCCAAATGTTACTGGCTCGCTGCACATGGGGCACGCCATGTTCGTCACACTTGAGGATATTATGGTTAGATACCATCGTATGAAGGGAAGGCCAACACTTTGGCTTCCTGGGACTGATCATGCTGGTATAGCCACACAGTTGGTTGTGGAAAGAATGCTTGCATCAGAAGGAATTAAAAGAGCTGACTTGGGTCGAGATGAGTTTGTGAAAAGAGTTTGGGAGTGGAAAGAGAAGTATGGTGGAACTATCACAAATCAGATCAAAAGGCTTGGTGCTTCTTGTGATTGGACGAGGGAGCATTTCACCCTTGATGAACAGCTAAGTCGAGCTGTTGTTGAGGCCTTTGTTAGACTTCATGAAAAAGGCTTAATCTATCAAGGATCTTACATGGTGAACTGGTCTCCTAGTCTGCAGACTGCTGTTTCTGACTTGGAAGTAGAATATCATGAAGAATCCGGTAGTCTTTATTATATTAAGTATCGTGTTGCTGGAGGCTCAAAGACTGACTTTCTGACAATAGCAACAACACGCCCGGAGACTTTATTTGGTGATGTAGCTATTGCTGTGCATCCTGAGGATGATCGATATTCTAAATACATAAATAGAATGGCTATAGTGCCTATGACATATGGTCGCCATGTCCCTATAATCGCTGACAAGCTTGTTGATAAAGAGTTTGGCACTGGTGTGTTAAAGATAAGCCCTGGACATGATCATAACGATTACAACCTTGCAAAAAAGCTTGGTCTTCCAATACTAAATGTTATGAACAAGGATGGGACACTTAACAAGGTTGCGGGACTATACTGTGCACTGTGGCCTTTCAGTACTCTTGGGTGGCCAGATGTGTCAACAGAGGATTTTAGACGATGGTTTAATCTATGGAAGCCTTTGGCCATCTGTTCCAGGTCAAGTAATGATCCATGGAAAAGAGCAAGTTCCAAGGGACGAAGGGAGAGGGACCTTAATTTATCCACCGAGAGGCTGACATCCAATAAGGCCTTCACTAACAAACTATGGAACGCTGGAAAGTTTGTATTGCAGAATTTGCCCAGTCAGAATGATGCTTCAATTTGGGAAAATATACTCTCATATAAGTTTGACAAAGTGGAGCTTCTGGACATTCTACCATTACCAGAACGTTGGGTGACTAGAGCCATTCGGAATGCACGAGCAGAATATTCTGTTGAGCCGGTAAAGCGTATATCAGCATCAATAGTCGCAAATGTAGAAGTTACTGAGTACATAATGGTAAGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

525

Amino Acids

59.92

Weight (kDa)

9.17

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	78 - 257	5.3e-66	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	100 - 252	2.7e-09	tRNA synthetases class I (M)
tRNA-synt_1_2	PF13603	306 - 366	2.5e-07	Leucyl-tRNA synthetase, editing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16715
fragaria_vesca	FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130
malus_domestica	MD05G1034800.v1.1 MD09G1264300.v1.1 MD09G1264400.v1.1 MD17G1258800.v1.1 MD17G1259600.v1.1 MD17G1259800.v1.1 MD17G1260100.v1.1
prunus_persica	Prupe.3G161900_v2.0.a1 Prupe.3G162000_v2.0.a1
pyrus_communis	pycom09g17800 pycom17g26100
rosa_chinensis	RchiOBHm_Chr1g0328051
rosa_laevigata	RLG00000029942
rosa_multiflora	Rmu_sc0001829.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321900
rosa_rugosa	Rorug01G0073400
rosa_samantha	Rh1AG090500 Rh1BG072400 Rh1CG087100 Rh1DG093800
rosa_wichuraiana	Rw1G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	176, 202
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	5 cut(s)	24, 100, 103, 162, 1112
AclI	AACGTT	1 cut(s)	1456
AclWI	GGATC	3 cut(s)	284, 703, 1229
AcoI	YGGCCR	2 cut(s)	1154, 1209
AcsI	RAATTY	1 cut(s)	1360
AcyI	GRCGYC	2 cut(s)	97, 177
AdeI	CACNNNGTG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	1144, 1559
AfiI	CCNNNNNNNGG	1 cut(s)	1296
AgsI	TTSAA	1 cut(s)	1386
AhdI	GACNNNNNGTC	1 cut(s)	945
AjnI	CCWGG	4 cut(s)	239, 421, 1018, 1220
AjuI	GAANNNNNNNTTGG	2 cut(s)	1301, 1333
AleI	CACNNNNGTG	1 cut(s)	1001
AluBI	AGCT	8 cut(s)	273, 497, 634, 644, 872, 976, 1057, 1429
AluI	AGCT	8 cut(s)	273, 497, 634, 644, 872, 976, 1057, 1429
Alw21I	GWGCWC	1 cut(s)	1129
Alw26I	GTCTC	4 cut(s)	188, 255, 720, 845
Alw44I	GTGCAC	1 cut(s)	1125
AlwI	GGATC	3 cut(s)	284, 703, 1229
AlwNI	CAGNNNCTG	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	6 cut(s)	404, 654, 1133, 1154, 1209, 1314
ApaLI	GTGCAC	1 cut(s)	1125
ApeKI	GCWGC	4 cut(s)	152, 155, 158, 334
ApoI	RAATTY	1 cut(s)	1360
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	1276
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	5 cut(s)	118, 610, 718, 875, 1474
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	1276
AxyI	CCTNAGG	2 cut(s)	65, 888
BaeGI	GKGCMC	2 cut(s)	348, 1129
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BalI	TGGCCA	2 cut(s)	1156, 1211
BauI	CACGAG	1 cut(s)	1485
BbsI	GAAGAC	2 cut(s)	172, 1055
Bbv12I	GWGCWC	1 cut(s)	1129
BbvI	GCAGC	4 cut(s)	139, 142, 145, 321
BccI	CCATC	5 cut(s)	81, 396, 1085, 1179, 1220
BceAI	ACGGC	2 cut(s)	92, 190
BciT130I	CCWGG	4 cut(s)	241, 423, 1020, 1222
BclI	TGATCA	2 cut(s)	430, 1027
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	4 cut(s)	188, 255, 720, 845
BfaI	CTAG	3 cut(s)	720, 1467, 1576
BfmI	CTRYAG	2 cut(s)	725, 927
BisI	GCNGC	7 cut(s)	100, 103, 153, 156, 159, 162, 335
BlsI	GCNGC	7 cut(s)	101, 104, 154, 157, 160, 163, 336
BmcAI	AGTACT	1 cut(s)	1144
Bme1390I	CCNGG	5 cut(s)	241, 423, 848, 1020, 1222
Bme18I	GGWCC	1 cut(s)	1276
BmeRI	GACNNNNNGTC	1 cut(s)	945
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	1276
BmiI	GGNNCC	2 cut(s)	71, 1277
BmrFI	CCNGG	5 cut(s)	241, 423, 848, 1020, 1222
BmrI	ACTGGG	1 cut(s)	1362
BmsI	GCATC	5 cut(s)	297, 485, 892, 1369, 1535
BmuI	ACTGGG	1 cut(s)	1362
BoxI	GACNNNNGTC	1 cut(s)	504
BpiI	GAAGAC	2 cut(s)	172, 1055
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	898
BsaHI	GRCGYC	2 cut(s)	97, 177
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	5 cut(s)	280, 422, 1018, 1238, 1257
BsaWI	WCCGGW	2 cut(s)	190, 770
Bsc4I	CCNNNNNNNGG	1 cut(s)	1296
Bse118I	RCCGGY	1 cut(s)	1507
Bse1I	ACTGG	4 cut(s)	331, 716, 1003, 1368
Bse21I	CCTNAGG	2 cut(s)	65, 888
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	4 cut(s)	241, 423, 1020, 1222
BseCI	ATCGAT	1 cut(s)	898
BseDI	CCNNGG	5 cut(s)	280, 422, 1018, 1238, 1257
BseGI	GGATG	5 cut(s)	73, 883, 898, 1096, 1304
BseLI	CCNNNNNNNGG	1 cut(s)	1296
BseMII	CTCAG	3 cut(s)	79, 879, 1545
BseNI	ACTGG	4 cut(s)	331, 716, 1003, 1368
BseRI	GAGGAG	3 cut(s)	34, 45, 123
BseSI	GKGCMC	2 cut(s)	348, 1129
BseXI	GCAGC	4 cut(s)	139, 142, 145, 321
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	6 cut(s)	406, 656, 1135, 1156, 1211, 1316
BshVI	ATCGAT	1 cut(s)	898
BsiHKAI	GWGCWC	1 cut(s)	1129
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	191, 771, 848, 1508
BslFI	GGGAC	6 cut(s)	439, 941, 1108, 1128, 1275, 1289
BslI	CCNNNNNNNGG	1 cut(s)	1296
BsmAI	GTCTC	4 cut(s)	188, 255, 720, 845
BsmFI	GGGAC	6 cut(s)	439, 941, 1108, 1128, 1275, 1289
BsmI	GAATGC	2 cut(s)	474, 1486
BsnI	GGCC	6 cut(s)	406, 656, 1135, 1156, 1211, 1316
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	348, 1129
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
Bsp19I	CCATGG	1 cut(s)	1238
BspACI	CCGC	5 cut(s)	24, 100, 103, 162, 1112
BspANI	GGCC	6 cut(s)	406, 656, 1135, 1156, 1211, 1316
BspCNI	CTCAG	3 cut(s)	78, 880, 1546
BspDI	ATCGAT	1 cut(s)	898
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	2 cut(s)	670, 760
BspLI	GGNNCC	2 cut(s)	71, 1277
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	3 cut(s)	284, 703, 1229
BspTNI	GGTCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	1507
BsrI	ACTGG	4 cut(s)	331, 716, 1003, 1368
BssAI	RCCGGY	1 cut(s)	1507
BssECI	CCNNGG	5 cut(s)	280, 422, 1018, 1238, 1257
BssMI	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
BssNI	GRCGYC	2 cut(s)	97, 177
BssSI	CACGAG	1 cut(s)	1485
BssT1I	CCWWGG	2 cut(s)	1238, 1257
Bst2BI	CACGAG	1 cut(s)	1485
Bst2UI	CCWGG	4 cut(s)	241, 423, 1020, 1222
Bst4CI	ACNGT	3 cut(s)	453, 1124, 1131
Bst6I	CTCTTC	4 cut(s)	84, 89, 128, 219
BstACI	GRCGYC	2 cut(s)	97, 177
BstAPI	GCANNNNNTGC	1 cut(s)	1363
BstC8I	GCNNGC	3 cut(s)	332, 348, 474
BstDEI	CTNAG	4 cut(s)	65, 635, 888, 1554
BstDSI	CCRYGG	1 cut(s)	1238
BstF5I	GGATG	5 cut(s)	73, 883, 898, 1096, 1304
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	7 cut(s)	292, 433, 576, 698, 898, 1030, 1237
BstMAI	GTCTC	4 cut(s)	188, 255, 720, 845
BstMBI	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 161, 343, 443, 1363, 1513
BstNI	CCWGG	4 cut(s)	241, 423, 1020, 1222
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSCI	CCNGG	5 cut(s)	239, 421, 846, 1018, 1220
BstSFI	CTRYAG	2 cut(s)	725, 927
BstSLI	GKGCMC	2 cut(s)	348, 1129
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	139, 142, 145, 321
BstV2I	GAAGAC	2 cut(s)	172, 1055
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	3 cut(s)	414, 454, 1458
BstYI	RGATCY	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	898
Bsu36I	CCTNAGG	2 cut(s)	65, 888
BsuRI	GGCC	6 cut(s)	406, 656, 1135, 1156, 1211, 1316
BsuTUI	ATCGAT	1 cut(s)	898
BtgI	CCRYGG	1 cut(s)	1238
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	5 cut(s)	73, 883, 898, 1096, 1304
BtsIMutI	CAGTG	2 cut(s)	996, 1127
Cac8I	GCNNGC	3 cut(s)	332, 348, 474
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	2 cut(s)	670, 760
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	1507
Cfr13I	GGNCC	1 cut(s)	1276
ClaI	ATCGAT	1 cut(s)	898
CseI	GACGC	2 cut(s)	105, 166
CsiI	ACCWGGT	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	1143, 1558
CviAII	CATG	9 cut(s)	340, 352, 434, 671, 703, 761, 953, 1025, 1239
CviQI	GTAC	2 cut(s)	1143, 1558
DdeI	CTNAG	4 cut(s)	65, 635, 888, 1554
DpnI	GATC	7 cut(s)	291, 432, 575, 697, 897, 1029, 1236
DpnII	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
DraIII	CACNNNGTG	1 cut(s)	243
DrdI	GACNNNNNNGTC	2 cut(s)	176, 202
DriI	GACNNNNNGTC	1 cut(s)	945
DseDI	GACNNNNNNGTC	2 cut(s)	176, 202
EaeI	YGGCCR	2 cut(s)	1154, 1209
Eam1104I	CTCTTC	4 cut(s)	84, 89, 128, 219
Eam1105I	GACNNNNNGTC	1 cut(s)	945
EarI	CTCTTC	4 cut(s)	84, 89, 128, 219
EciI	GGCGGA	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	1238, 1257
Eco147I	AGGCCT	2 cut(s)	656, 1316
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	1276
Eco81I	CCTNAGG	2 cut(s)	65, 888
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	1276
EcoRII	CCWGG	4 cut(s)	239, 421, 1018, 1220
EcoT14I	CCWWGG	2 cut(s)	1238, 1257
ErhI	CCWWGG	2 cut(s)	1238, 1257
FaeI	CATG	9 cut(s)	343, 355, 437, 674, 706, 764, 956, 1028, 1242
FalI	AAGNNNNNCTT	6 cut(s)	277, 309, 806, 838, 1413, 1445
FaqI	GGGAC	6 cut(s)	439, 941, 1108, 1128, 1275, 1289
FatI	CATG	9 cut(s)	339, 351, 433, 670, 702, 760, 952, 1024, 1238
FauI	CCCGC	1 cut(s)	1105
FauNDI	CATATG	1 cut(s)	943
FbaI	TGATCA	2 cut(s)	430, 1027
Fnu4HI	GCNGC	7 cut(s)	100, 103, 153, 156, 159, 162, 335
FokI	GGATG	5 cut(s)	60, 870, 905, 1103, 1291
Fsp4HI	GCNGC	7 cut(s)	100, 103, 153, 156, 159, 162, 335
FspBI	CTAG	3 cut(s)	720, 1467, 1576
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	7 cut(s)	100, 103, 153, 156, 159, 162, 335
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	6 cut(s)	406, 656, 1135, 1156, 1211, 1316
HapII	CCGG	4 cut(s)	191, 771, 848, 1508
HgaI	GACGC	2 cut(s)	105, 166
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	2 cut(s)	97, 177
Hin1II	CATG	9 cut(s)	343, 355, 437, 674, 706, 764, 956, 1028, 1242
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	1167
HindII	GTYRAC	1 cut(s)	1167
HindIII	AAGCTT	3 cut(s)	271, 974, 1055
HinfI	GANTC	3 cut(s)	4, 248, 767
HpaII	CCGG	4 cut(s)	191, 771, 848, 1508
HphI	GGTGA	5 cut(s)	118, 610, 718, 875, 1474
Hpy166II	GTNNAC	3 cut(s)	709, 1127, 1167
Hpy188I	TCNGA	8 cut(s)	169, 266, 481, 573, 742, 828, 1374, 1479
Hpy188III	TCNNGA	6 cut(s)	191, 509, 671, 761, 887, 1433
Hpy8I	GTNNAC	3 cut(s)	709, 1127, 1167
Hpy99I	CGWCG	2 cut(s)	34, 99
HpyAV	CCTTC	6 cut(s)	28, 391, 396, 476, 1260, 1327
HpyCH4III	ACNGT	3 cut(s)	453, 1124, 1131
HpyCH4IV	ACGT	1 cut(s)	1456
HpyCH4V	TGCA	8 cut(s)	337, 476, 727, 883, 1049, 1127, 1357, 1484
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 161, 343, 443, 1363, 1513
HpyF3I	CTNAG	4 cut(s)	65, 635, 888, 1554
HpySE526I	ACGT	1 cut(s)	1456
Hsp92I	GRCGYC	2 cut(s)	97, 177
Hsp92II	CATG	9 cut(s)	343, 355, 437, 674, 706, 764, 956, 1028, 1242
HspAI	GCGC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	190
Ksp22I	TGATCA	2 cut(s)	430, 1027
Kzo9I	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
LmnI	GCTCC	2 cut(s)	610, 1426
Lsp1109I	GCAGC	4 cut(s)	139, 142, 145, 321
LweI	GCATC	5 cut(s)	297, 485, 892, 1369, 1535
MabI	ACCWGGT	1 cut(s)	239
MaeI	CTAG	3 cut(s)	720, 1467, 1576
MaeII	ACGT	1 cut(s)	1456
MaeIII	GTNAC	4 cut(s)	322, 358, 1462, 1549
MalI	GATC	7 cut(s)	291, 432, 575, 697, 897, 1029, 1236
MboI	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
MboII	GAAGA	7 cut(s)	71, 76, 115, 172, 236, 776, 1055
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	348, 1129
MlsI	TGGCCA	2 cut(s)	1156, 1211
MluCI	AATT	4 cut(s)	486, 1282, 1360, 1386
MluNI	TGGCCA	2 cut(s)	1156, 1211
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	2 cut(s)	1156, 1211
MroI	TCCGGA	1 cut(s)	190
MscI	TGGCCA	2 cut(s)	1156, 1211
MseI	TTAA	7 cut(s)	489, 683, 789, 1007, 1101, 1191, 1281
MslI	CAYNNNNRTG	1 cut(s)	1001
Msp20I	TGGCCA	2 cut(s)	1156, 1211
MspI	CCGG	4 cut(s)	191, 771, 848, 1508
MspR9I	CCNGG	5 cut(s)	241, 423, 848, 1020, 1222
Mva1269I	GAATGC	2 cut(s)	474, 1486
MvaI	CCWGG	4 cut(s)	241, 423, 1020, 1222
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	6 cut(s)	158, 161, 343, 443, 1363, 1513
NciI	CCSGG	1 cut(s)	848
NcoI	CCATGG	1 cut(s)	1238
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
NlaIII	CATG	9 cut(s)	343, 355, 437, 674, 706, 764, 956, 1028, 1242
NlaIV	GGNNCC	2 cut(s)	71, 1277
NmuCI	GTSAC	2 cut(s)	358, 1462
OliI	CACNNNNGTG	1 cut(s)	1001
PagI	TCATGA	2 cut(s)	670, 760
PceI	AGGCCT	2 cut(s)	656, 1316
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 1483
PctI	GAATGC	2 cut(s)	474, 1486
PfeI	GAWTC	2 cut(s)	4, 767
PkrI	GCNGC	7 cut(s)	101, 104, 154, 157, 160, 163, 336
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	1276
PshAI	GACNNNNGTC	1 cut(s)	504
Psp1406I	AACGTT	1 cut(s)	1456
Psp5II	RGGWCCY	1 cut(s)	1276
Psp6I	CCWGG	4 cut(s)	239, 421, 1018, 1220
PspGI	CCWGG	4 cut(s)	239, 421, 1018, 1220
PspN4I	GGNNCC	2 cut(s)	71, 1277
PspPI	GGNCC	1 cut(s)	1276
PspPPI	RGGWCCY	1 cut(s)	1276
PstI	CTGCAG	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	2 cut(s)	1144, 1559
RsaNI	GTAC	2 cut(s)	1143, 1558
RseI	CAYNNNNRTG	1 cut(s)	1001
SaqAI	TTAA	7 cut(s)	489, 683, 789, 1007, 1101, 1191, 1281
SatI	GCNGC	7 cut(s)	100, 103, 153, 156, 159, 162, 335
Sau3AI	GATC	7 cut(s)	289, 430, 573, 695, 895, 1027, 1234
Sau96I	GGNCC	1 cut(s)	1276
ScaI	AGTACT	1 cut(s)	1144
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	5 cut(s)	241, 423, 848, 1020, 1222
SduI	GDGCHC	2 cut(s)	348, 1129
SexAI	ACCWGGT	1 cut(s)	239
SfaNI	GCATC	5 cut(s)	297, 485, 892, 1369, 1535
SfcI	CTRYAG	2 cut(s)	725, 927
SinI	GGWCC	1 cut(s)	1276
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	4 cut(s)	486, 1282, 1360, 1386
SseBI	AGGCCT	2 cut(s)	656, 1316
SsiI	CCGC	5 cut(s)	24, 100, 103, 162, 1112
SspI	AATATT	1 cut(s)	1496
SspMI	CTAG	3 cut(s)	720, 1467, 1576
StuI	AGGCCT	2 cut(s)	656, 1316
StyD4I	CCNGG	5 cut(s)	239, 421, 846, 1018, 1220
StyI	CCWWGG	2 cut(s)	1238, 1257
TaaI	ACNGT	3 cut(s)	453, 1124, 1131
TaiI	ACGT	1 cut(s)	1459
TaqI	TCGA	4 cut(s)	305, 508, 640, 898
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	486, 1282, 1360, 1386
TatI	WGTACW	2 cut(s)	1142, 1557
TauI	GCSGC	3 cut(s)	102, 105, 164
TfiI	GAWTC	2 cut(s)	4, 767
Tru1I	TTAA	7 cut(s)	489, 683, 789, 1007, 1101, 1191, 1281
Tru9I	TTAA	7 cut(s)	489, 683, 789, 1007, 1101, 1191, 1281
TscAI	CASTG	2 cut(s)	1003, 1134
TseFI	GTSAC	2 cut(s)	358, 1462
TseI	GCWGC	4 cut(s)	152, 155, 158, 334
Tsp45I	GTSAC	2 cut(s)	358, 1462
TspDTI	ATGAA	7 cut(s)	237, 410, 642, 659, 687, 777, 1097
TspRI	CASTG	2 cut(s)	1003, 1134
VneI	GTGCAC	1 cut(s)	1125
VpaK11BI	GGWCC	1 cut(s)	1276
XapI	RAATTY	1 cut(s)	1360
XspI	CTAG	3 cut(s)	720, 1467, 1576
ZrmI	AGTACT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.