Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004429

Physical Location & Seq

Genomic Coordinates Reverse (-)

18085228 .. 18088586

Gene Structure 3359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

AACTGGTCTCCTAGTCTACAGACTGCTGTTTCTGACTTGGAAGTAGAATATCATGAAGAATCTGGTACTCTCTATTATATTAAGTATCGTGTAGCTGGAGGCTCAAAGTCTGACTATCTGACAATAGCAACAACACGCCCGGAGACTTTATTTGGTGATGTAGCTATTGCTGTGCATCCTGAGGATGATCGATATTCTAAATATATTAATAGAATGGCTATAGTTCCTTTGACATATGGCCGTCACGTCCCTATCATCTCTGACAAGCATGTTGATAAAGACTTTGGCACTGGTGTGTTGAAGATAAGCCCTGGACATGATCATAATGATTACAATCTTGCAAGAAAGCTTGGTCTTCCAATACTTAATGTCATGAACAAAGATGCAACTCTAAACAAGGTTGCCGGACTGTACTGTGGCCTTGATCGGTTTGAGGCCCGCAAGAAAATTTGGGCAGATCTGGAGGAGACTGGTTTGGCTGTAAAGAAAGAACCACACACTTTACGAGTTCCCAGATCTCAGCGTGGTGGAGAAGTTATAGAACCACTAGTAAGCAAGCAGTGGTTTGTAACGATGGAGCCCTTAGCTGAGAAAGCCCTTCGTGCTGTTGAAAAAGGAGATTTGAAAATCATACCCGAAAGATTTGAAAAGGTATGCAGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

222

Amino Acids

24.94

Weight (kDa)

7.22

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16715
fragaria_vesca	FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130 FvH4_7g04130
malus_domestica	MD05G1034800.v1.1 MD09G1264300.v1.1 MD09G1264400.v1.1 MD17G1258800.v1.1 MD17G1259600.v1.1 MD17G1259800.v1.1 MD17G1260100.v1.1
prunus_persica	Prupe.3G161900_v2.0.a1 Prupe.3G162000_v2.0.a1
pyrus_communis	pycom09g17800 pycom17g26100
rosa_chinensis	RchiOBHm_Chr1g0328051
rosa_laevigata	RLG00000029942
rosa_multiflora	Rmu_sc0001829.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321900
rosa_rugosa	Rorug01G0073400
rosa_samantha	Rh1AG090500 Rh1BG072400 Rh1CG087100 Rh1DG093800
rosa_wichuraiana	Rw1G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	447
AfaI	GTAC	2 cut(s)	67, 413
AgsI	TTSAA	4 cut(s)	301, 611, 625, 647
AhlI	ACTAGT	1 cut(s)	547
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	4 cut(s)	95, 164, 349, 587
AluI	AGCT	4 cut(s)	95, 164, 349, 587
Alw26I	GTCTC	3 cut(s)	12, 137, 461
AoxI	GGCC	3 cut(s)	238, 418, 435
ApoI	RAATTY	1 cut(s)	447
AseI	ATTAAT	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	347
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	3 cut(s)	12, 137, 461
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	2 cut(s)	12, 548
BfmI	CTRYAG	2 cut(s)	17, 219
BglII	AGATCT	2 cut(s)	457, 515
Bme1390I	CCNGG	2 cut(s)	140, 312
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	2 cut(s)	140, 312
BmsI	GCATC	2 cut(s)	184, 373
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	2 cut(s)	117, 482
Bpu10I	CCTNAGC	1 cut(s)	583
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	310
Bse1I	ACTGG	3 cut(s)	8, 295, 475
Bse21I	CCTNAGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	175, 190
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	171, 533, 579
BseNI	ACTGG	3 cut(s)	8, 295, 475
BseRI	GAGGAG	1 cut(s)	479
BshFI	GGCC	3 cut(s)	240, 420, 437
BshVI	ATCGAT	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	140, 405
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	3 cut(s)	12, 137, 461
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	240, 420, 437
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	187, 319, 424, 457, 515
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	3 cut(s)	240, 420, 437
BspCNI	CTCAG	3 cut(s)	172, 532, 580
BspDI	ATCGAT	1 cut(s)	190
BspHI	TCATGA	2 cut(s)	52, 372
BspLI	GGNNCC	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	8, 295, 475
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	5 cut(s)	187, 319, 424, 457, 515
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	411, 416
BstC8I	GCNNGC	2 cut(s)	439, 557
BstDEI	CTNAG	4 cut(s)	180, 519, 583, 588
BstF5I	GGATG	2 cut(s)	175, 190
BstKTI	GATC	5 cut(s)	190, 322, 427, 460, 518
BstMAI	GTCTC	3 cut(s)	12, 137, 461
BstMBI	GATC	5 cut(s)	187, 319, 424, 457, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 602
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	138, 310
BstSFI	CTRYAG	2 cut(s)	17, 219
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	457, 515
BstYI	RGATCY	2 cut(s)	457, 515
Bsu15I	ATCGAT	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	240, 420, 437
BsuTUI	ATCGAT	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	175, 190
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	288, 566
Cac8I	GCNNGC	2 cut(s)	439, 557
CciI	TCATGA	2 cut(s)	52, 372
Cfr13I	GGNCC	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	66, 412
CviAII	CATG	4 cut(s)	53, 269, 317, 373
CviQI	GTAC	2 cut(s)	66, 412
DdeI	CTNAG	4 cut(s)	180, 519, 583, 588
DpnI	GATC	5 cut(s)	189, 321, 426, 459, 517
DpnII	GATC	5 cut(s)	187, 319, 424, 457, 515
EaeI	YGGCCR	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	4 cut(s)	56, 272, 320, 376
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	4 cut(s)	52, 268, 316, 372
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	16
FokI	GGATG	2 cut(s)	162, 197
FriOI	GRGCYC	1 cut(s)	582
FspBI	CTAG	2 cut(s)	12, 548
GsuI	CTGGAG	2 cut(s)	117, 482
HaeIII	GGCC	3 cut(s)	240, 420, 437
HapII	CCGG	2 cut(s)	140, 405
Hin1II	CATG	4 cut(s)	56, 272, 320, 376
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	2 cut(s)	140, 405
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	34, 112, 120, 262
Hpy188III	TCNNGA	4 cut(s)	53, 179, 373, 461
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	608
HpyCH4III	ACNGT	2 cut(s)	411, 416
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	175, 341, 386, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 602
HpyF3I	CTNAG	4 cut(s)	180, 519, 583, 588
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	56, 272, 320, 376
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	187, 319, 424, 457, 515
LmnI	GCTCC	1 cut(s)	577
LweI	GCATC	2 cut(s)	184, 373
MaeI	CTAG	2 cut(s)	12, 548
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	242, 568
MalI	GATC	5 cut(s)	189, 321, 426, 459, 517
MboI	GATC	5 cut(s)	187, 319, 424, 457, 515
MboII	GAAGA	3 cut(s)	68, 313, 347
MflI	RGATCY	2 cut(s)	457, 515
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	1 cut(s)	447
MnlI	CCTC	4 cut(s)	92, 175, 427, 457
MseI	TTAA	3 cut(s)	81, 207, 366
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	140, 405
MspR9I	CCNGG	2 cut(s)	140, 312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	593, 602
NciI	CCSGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	5 cut(s)	187, 319, 424, 457, 515
NlaIII	CATG	4 cut(s)	56, 272, 320, 376
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	293
PagI	TCATGA	2 cut(s)	52, 372
PfeI	GAWTC	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	457, 515
RsaI	GTAC	2 cut(s)	67, 413
RsaNI	GTAC	2 cut(s)	66, 412
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	81, 207, 366
Sau3AI	GATC	5 cut(s)	187, 319, 424, 457, 515
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	140, 312
SduI	GDGCHC	1 cut(s)	582
SetI	ASST	7 cut(s)	97, 166, 249, 351, 402, 589, 654
SfaNI	GCATC	2 cut(s)	184, 373
SfcI	CTRYAG	2 cut(s)	17, 219
SmiMI	CAYNNNNRTG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	2 cut(s)	12, 548
StyD4I	CCNGG	2 cut(s)	138, 310
TaaI	ACNGT	2 cut(s)	411, 416
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	447
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	81, 207, 366
Tru9I	TTAA	3 cut(s)	81, 207, 366
TscAI	CASTG	2 cut(s)	295, 566
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	69, 389
TspRI	CASTG	2 cut(s)	295, 566
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	2 cut(s)	12, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.