Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010002

Physical Location & Seq

Genomic Coordinates Forward (+)

6281602 .. 6284742

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G084400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGGGACCGAGAGCGAGACAGGGACAGGGACCGCGAGCGAAACCGAGACAGAGATCGAGACAGAGAAAGACGCCGGGACAGAGACGACCGTGATCGTGATCGGGACCGGGACCGCGTCCGCAGCAAGAGGTCGCGTACACCGGAGCGCACCAGACCACGTCACACCCGCTCCCGCACGCGCTCGCCGGACCGGTACCGCTCACGCACTCGCTCAGTCTCCCGCTCTCGCTCTCCGGACGACCGGTCCCACCGGCGGCGCCACCATCACAACCGTAGCCCATCTGCGGAGGCACGCAAGCGGCAGAGGCGCGAGCCGACAGCCGAGGACGAGAGGGAGAGGCAGAAGGCGGCGGTGGCTGACTTCGTCGAGGGCATCGCAAAGGAGCAGAAAACTCAGCAGAAGCAGAGCAGCGATGGCGGTGGTGACGAAGGCCTGGACGAGGACGAGATTGAGATGATGAAGAAATTTGGGATTCCGACTGGATTTGACTCGACGAAAGGGAAGCCCGTGCCTGGCGCCGATGTGAGCGGCATTAGGGCGGTCACTAAGCGGCAGCCGAGACAGTATATGAATCGCCGCGGTGGATTTAATCGGCCTTTGCCTGCTGAGCGTAATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1777

Protein Analysis

208

Amino Acids

24.76

Weight (kDa)

11.34

Isoelectric Point (pI)

82.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57370
fragaria_vesca	FvH4_4g07990 FvH4_4g07990 FvH4_4g07990
malus_domestica	MD13G1252200.v1.1 MD16G1256400.v1.1
prunus_persica	Prupe.1G084400_v2.0.a1
pyrus_communis	pycom13g22590 pycom16g21750
rosa_chinensis	RchiOBHm_Chr4g0401721
rosa_laevigata	RLG00000009139
rosa_multiflora	Rmu_sc0001405.1_g000006 Rmu_sc0001405.1_g000007 Rmu_sc0001405.1_g000008
rosa_roxburghii	Rroxscaffold_5G00346190
rosa_rugosa	Rorug04G0031300 Rorug04G0031300
rosa_samantha	Rh4AG108400 Rh4BG102200 Rh4CG116600 Rh4DG100100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	3 cut(s)	195, 258, 518
AccBSI	CCGCTC	4 cut(s)	171, 201, 225, 531
AccII	CGCG	6 cut(s)	36, 117, 136, 181, 312, 582
AccIII	TCCGGA	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	3 cut(s)	73, 259, 519
AfaI	GTAC	2 cut(s)	139, 197
AfiI	CCNNNNNNNGG	4 cut(s)	255, 286, 442, 515
AgeI	ACCGGT	2 cut(s)	192, 243
AhdI	GACNNNNNGTC	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	435, 514
Alw26I	GTCTC	6 cut(s)	12, 42, 54, 78, 223, 556
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	433, 596
ApeKI	GCWGC	3 cut(s)	123, 411, 556
ApoI	RAATTY	1 cut(s)	467
AsiGI	ACCGGT	2 cut(s)	192, 243
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	5 cut(s)	150, 183, 261, 312, 521
AspS9I	GGNCC	6 cut(s)	7, 31, 106, 112, 190, 246
AsuC2I	CCSGG	2 cut(s)	77, 110
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	6 cut(s)	7, 31, 106, 112, 190, 246
BanI	GGYRCC	3 cut(s)	195, 258, 518
BbvI	GCAGC	3 cut(s)	135, 423, 568
BccI	CCATC	3 cut(s)	273, 289, 410
BciT130I	CCWGG	2 cut(s)	437, 516
BcnI	CCSGG	2 cut(s)	77, 110
BcoDI	GTCTC	6 cut(s)	12, 42, 54, 78, 223, 556
BfaI	CTAG	1 cut(s)	622
BfoI	RGCGCY	2 cut(s)	262, 522
BisI	GCNGC	9 cut(s)	124, 257, 302, 351, 412, 532, 554, 557, 580
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	9 cut(s)	125, 258, 303, 352, 413, 533, 555, 558, 581
Bme1390I	CCNGG	4 cut(s)	77, 110, 437, 516
Bme18I	GGWCC	6 cut(s)	7, 31, 106, 112, 190, 246
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	6 cut(s)	7, 31, 106, 112, 190, 246
BmiI	GGNNCC	8 cut(s)	8, 32, 107, 113, 197, 248, 260, 520
BmrFI	CCNGG	4 cut(s)	77, 110, 437, 516
BmsI	GCATC	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	609
BpuMI	CCSGG	2 cut(s)	77, 110
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	3 cut(s)	73, 259, 519
BsaJI	CCNNGG	2 cut(s)	324, 580
BsaWI	WCCGGW	4 cut(s)	142, 192, 235, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 286, 442, 515
Bse118I	RCCGGY	3 cut(s)	192, 243, 252
Bse1I	ACTGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	437, 516
BseDI	CCNNGG	2 cut(s)	324, 580
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	4 cut(s)	255, 286, 442, 515
BseMII	CTCAG	3 cut(s)	228, 410, 600
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	3 cut(s)	135, 423, 568
Bsh1236I	CGCG	6 cut(s)	36, 117, 136, 181, 312, 582
Bsh1285I	CGRYCG	2 cut(s)	91, 244
BshFI	GGCC	2 cut(s)	435, 598
BshNI	GGYRCC	3 cut(s)	195, 258, 518
BshTI	ACCGGT	2 cut(s)	192, 243
BsiEI	CGRYCG	2 cut(s)	91, 244
BsiSI	CCGG	8 cut(s)	76, 109, 143, 188, 193, 236, 244, 253
BslFI	GGGAC	7 cut(s)	20, 38, 44, 92, 119, 125, 232
BslI	CCNNNNNNNGG	4 cut(s)	255, 286, 442, 515
BsmAI	GTCTC	6 cut(s)	12, 42, 54, 78, 223, 556
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	7 cut(s)	20, 38, 44, 92, 119, 125, 232
BsnI	GGCC	2 cut(s)	435, 598
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	55, 94, 100
Bsp1720I	GCTNAGC	1 cut(s)	609
BspANI	GGCC	2 cut(s)	435, 598
BspCNI	CTCAG	3 cut(s)	227, 409, 601
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	6 cut(s)	36, 117, 136, 181, 312, 582
BspLI	GGNNCC	8 cut(s)	8, 32, 107, 113, 197, 248, 260, 520
BspT107I	GGYRCC	3 cut(s)	195, 258, 518
BsrBI	CCGCTC	4 cut(s)	171, 201, 225, 531
BsrFI	RCCGGY	3 cut(s)	192, 243, 252
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	3 cut(s)	192, 243, 252
BssECI	CCNNGG	2 cut(s)	324, 580
BssMI	GATC	3 cut(s)	55, 94, 100
BssNI	GRCGYC	3 cut(s)	73, 259, 519
Bst2UI	CCWGG	2 cut(s)	437, 516
Bst4CI	ACNGT	3 cut(s)	92, 275, 567
BstACI	GRCGYC	3 cut(s)	73, 259, 519
BstC8I	GCNNGC	7 cut(s)	38, 179, 185, 295, 299, 314, 606
BstDEI	CTNAG	4 cut(s)	214, 396, 549, 609
BstDSI	CCRYGG	1 cut(s)	580
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstFNI	CGCG	6 cut(s)	36, 117, 136, 181, 312, 582
BstH2I	RGCGCY	2 cut(s)	262, 522
BstHHI	GCGC	5 cut(s)	150, 183, 261, 312, 521
BstKTI	GATC	3 cut(s)	58, 97, 103
BstMAI	GTCTC	6 cut(s)	12, 42, 54, 78, 223, 556
BstMBI	GATC	3 cut(s)	55, 94, 100
BstMCI	CGRYCG	2 cut(s)	91, 244
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 307, 356, 417, 610
BstNI	CCWGG	2 cut(s)	437, 516
BstSCI	CCNGG	4 cut(s)	75, 108, 435, 514
BstUI	CGCG	6 cut(s)	36, 117, 136, 181, 312, 582
BstV1I	GCAGC	3 cut(s)	135, 423, 568
BsuRI	GGCC	2 cut(s)	435, 598
BtgI	CCRYGG	1 cut(s)	580
BtgZI	GCGATG	2 cut(s)	361, 429
BtrI	CACGTC	1 cut(s)	161
Cac8I	GCNNGC	7 cut(s)	38, 179, 185, 295, 299, 314, 606
CfoI	GCGC	5 cut(s)	150, 183, 261, 312, 521
Cfr10I	RCCGGY	3 cut(s)	192, 243, 252
Cfr13I	GGNCC	6 cut(s)	7, 31, 106, 112, 190, 246
Cfr42I	CCGCGG	1 cut(s)	583
CpoI	CGGWCCG	1 cut(s)	190
CseI	GACGC	2 cut(s)	81, 106
Csp6I	GTAC	2 cut(s)	138, 196
CspAI	ACCGGT	2 cut(s)	192, 243
CspI	CGGWCCG	1 cut(s)	190
CviJI	RGCY	8 cut(s)	279, 316, 323, 359, 435, 508, 559, 598
CviKI_1	RGCY	8 cut(s)	279, 316, 323, 359, 435, 508, 559, 598
CviQI	GTAC	2 cut(s)	138, 196
DdeI	CTNAG	4 cut(s)	214, 396, 549, 609
DinI	GGCGCC	2 cut(s)	260, 520
DpnI	GATC	3 cut(s)	57, 96, 102
DpnII	GATC	3 cut(s)	55, 94, 100
DriI	GACNNNNNGTC	1 cut(s)	244
Eam1105I	GACNNNNNGTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	435
Eco47I	GGWCC	6 cut(s)	7, 31, 106, 112, 190, 246
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	435, 514
EgeI	GGCGCC	2 cut(s)	260, 520
EheI	GGCGCC	2 cut(s)	260, 520
Esp3I	CGTCTC	1 cut(s)	78
FaiI	YATR	2 cut(s)	570, 572
FaqI	GGGAC	7 cut(s)	20, 38, 44, 92, 119, 125, 232
FauI	CCCGC	3 cut(s)	176, 182, 230
Fnu4HI	GCNGC	9 cut(s)	124, 257, 302, 351, 412, 532, 554, 557, 580
Fsp4HI	GCNGC	9 cut(s)	124, 257, 302, 351, 412, 532, 554, 557, 580
FspBI	CTAG	1 cut(s)	622
GlaI	GCGC	5 cut(s)	149, 182, 260, 311, 520
GluI	GCNGC	9 cut(s)	124, 257, 302, 351, 412, 532, 554, 557, 580
HaeII	RGCGCY	2 cut(s)	262, 522
HaeIII	GGCC	2 cut(s)	435, 598
HapII	CCGG	8 cut(s)	76, 109, 143, 188, 193, 236, 244, 253
HgaI	GACGC	2 cut(s)	81, 106
HhaI	GCGC	5 cut(s)	150, 183, 261, 312, 521
Hin1I	GRCGYC	3 cut(s)	73, 259, 519
Hin6I	GCGC	5 cut(s)	148, 181, 259, 310, 519
HinP1I	GCGC	5 cut(s)	148, 181, 259, 310, 519
HinfI	GANTC	3 cut(s)	475, 491, 574
HpaII	CCGG	8 cut(s)	76, 109, 143, 188, 193, 236, 244, 253
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	4 cut(s)	59, 98, 104, 236
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	2 cut(s)	371, 499
HpyAV	CCTTC	2 cut(s)	340, 425
HpyCH4III	ACNGT	3 cut(s)	92, 275, 567
HpyCH4IV	ACGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 307, 356, 417, 610
HpyF3I	CTNAG	4 cut(s)	214, 396, 549, 609
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	3 cut(s)	73, 259, 519
HspAI	GCGC	5 cut(s)	148, 181, 259, 310, 519
KasI	GGCGCC	2 cut(s)	258, 518
Kpn2I	TCCGGA	1 cut(s)	235
KpnI	GGTACC	1 cut(s)	199
KspI	CCGCGG	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	55, 94, 100
LmnI	GCTCC	3 cut(s)	145, 176, 385
Lsp1109I	GCAGC	3 cut(s)	135, 423, 568
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	1 cut(s)	622
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	3 cut(s)	161, 425, 544
MalI	GATC	3 cut(s)	57, 96, 102
MbiI	CCGCTC	4 cut(s)	171, 201, 225, 531
MboI	GATC	3 cut(s)	55, 94, 100
MboII	GAAGA	1 cut(s)	475
MluCI	AATT	1 cut(s)	467
Mly113I	GGCGCC	2 cut(s)	259, 519
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	123, 283, 300, 319, 327, 333, 364, 436
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	582
MspI	CCGG	8 cut(s)	76, 109, 143, 188, 193, 236, 244, 253
MspR9I	CCNGG	4 cut(s)	77, 110, 437, 516
MvaI	CCWGG	2 cut(s)	437, 516
MvnI	CGCG	6 cut(s)	36, 117, 136, 181, 312, 582
MwoI	GCNNNNNNNGC	5 cut(s)	123, 307, 356, 417, 610
NarI	GGCGCC	2 cut(s)	259, 519
NciI	CCSGG	2 cut(s)	77, 110
NdeII	GATC	3 cut(s)	55, 94, 100
NlaIV	GGNNCC	8 cut(s)	8, 32, 107, 113, 197, 248, 260, 520
NmeAIII	GCCGAG	2 cut(s)	349, 585
NmuCI	GTSAC	3 cut(s)	161, 425, 544
PceI	AGGCCT	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	475, 574
PflFI	GACNNNGTC	3 cut(s)	116, 159, 365
PinAI	ACCGGT	2 cut(s)	192, 243
PkrI	GCNGC	9 cut(s)	125, 258, 303, 352, 413, 533, 555, 558, 581
PleI	GAGTC	1 cut(s)	485
PluTI	GGCGCC	2 cut(s)	262, 522
PpsI	GAGTC	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	435, 514
PspGI	CCWGG	2 cut(s)	435, 514
PspN4I	GGNNCC	8 cut(s)	8, 32, 107, 113, 197, 248, 260, 520
PspPI	GGNCC	6 cut(s)	7, 31, 106, 112, 190, 246
PsyI	GACNNNGTC	3 cut(s)	116, 159, 365
RsaI	GTAC	2 cut(s)	139, 197
RsaNI	GTAC	2 cut(s)	138, 196
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SacII	CCGCGG	1 cut(s)	583
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	9 cut(s)	124, 257, 302, 351, 412, 532, 554, 557, 580
Sau3AI	GATC	3 cut(s)	55, 94, 100
Sau96I	GGNCC	6 cut(s)	7, 31, 106, 112, 190, 246
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	4 cut(s)	77, 110, 437, 516
SetI	ASST	2 cut(s)	134, 163
SfaNI	GCATC	1 cut(s)	384
SfoI	GGCGCC	2 cut(s)	260, 520
Sfr303I	CCGCGG	1 cut(s)	583
SgrAI	CRCCGGYG	1 cut(s)	252
SgrBI	CCGCGG	1 cut(s)	583
SinI	GGWCC	6 cut(s)	7, 31, 106, 112, 190, 246
Sse9I	AATT	1 cut(s)	467
SseBI	AGGCCT	1 cut(s)	435
SspDI	GGCGCC	2 cut(s)	258, 518
SspMI	CTAG	1 cut(s)	622
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	4 cut(s)	75, 108, 435, 514
TaaI	ACNGT	3 cut(s)	92, 275, 567
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	58, 369, 494
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	467
TauI	GCSGC	6 cut(s)	259, 304, 353, 534, 556, 582
TfiI	GAWTC	2 cut(s)	475, 574
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseFI	GTSAC	3 cut(s)	161, 425, 544
TseI	GCWGC	3 cut(s)	123, 411, 556
Tsp45I	GTSAC	3 cut(s)	161, 425, 544
TspDTI	ATGAA	2 cut(s)	476, 587
Tth111I	GACNNNGTC	3 cut(s)	116, 159, 365
VpaK11BI	GGWCC	6 cut(s)	7, 31, 106, 112, 190, 246
XagI	CCTNNNNNAGG	1 cut(s)	440
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.