Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001405.1

Orthogroup ID

OG0010002

Physical Location & Seq

Genomic Coordinates Forward (+)

29567 .. 30184

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001405.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgggagaccgagaaagagagcgagacagagaacgagaccgggagagaatccgagaccgggaccgagacagagacagacgccgtgacagagacgaccgtgatcgtgatcgtgaccgtgaccgtgaccgcgaccgtgtccggagcaagaggtcacgtacgccggagcgcagcagagcacgccacacgcgctcccgcacgcggtcgccggacttgtaccactcacgctccctctcccgttcccgcactccagaagaccgctcccaccgccgccgccaccaccaccgcagcccctccccggagtcgcggaagcgtgcgcggcgcgaggtgacggtggaggaggagaaggaccggcagaaggtggtgtcggaattcgtggaggggattgcgaaggagcagcagaagcagagcagcggtggtggagagggcggtgcggacgaggacgaggttgagatgatgaagaagttggggattccggtagggtttgattccacgaaggggaagccggtgcagggggccgatgtgagtggtgttagggccgtcacgaagcgccagcctagacagtacatgaaccgccgcggcggatttaaccggccattgcctgcagagcgcaatcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1777

Protein Analysis

205

Amino Acids

24.53

Weight (kDa)

11.24

Isoelectric Point (pI)

83.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57370
fragaria_vesca	FvH4_4g07990 FvH4_4g07990 FvH4_4g07990
malus_domestica	MD13G1252200.v1.1 MD16G1256400.v1.1
prunus_persica	Prupe.1G084400_v2.0.a1
pyrus_communis	pycom13g22590 pycom16g21750
rosa_chinensis	RchiOBHm_Chr4g0401721
rosa_laevigata	RLG00000009139
rosa_multiflora	Rmu_sc0001405.1_g000006 Rmu_sc0001405.1_g000007 Rmu_sc0001405.1_g000008
rosa_roxburghii	Rroxscaffold_5G00346190
rosa_rugosa	Rorug04G0031300 Rorug04G0031300
rosa_samantha	Rh4AG108400 Rh4BG102200 Rh4CG116600 Rh4DG100100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	7 cut(s)	129, 187, 199, 304, 316, 321, 576
AccIII	TCCGGA	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	3 cut(s)	157, 215, 563
AfiI	CCNNNNNNNGG	6 cut(s)	58, 198, 295, 355, 495, 509
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	6 cut(s)	18, 30, 48, 60, 66, 84
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	3 cut(s)	513, 534, 590
ApeKI	GCWGC	4 cut(s)	168, 285, 394, 408
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	6 cut(s)	168, 189, 316, 321, 549, 609
AspS9I	GGNCC	4 cut(s)	61, 346, 513, 534
AsuC2I	CCSGG	3 cut(s)	41, 59, 296
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	61, 346
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	180, 297, 406, 420
BceAI	ACGGC	2 cut(s)	66, 521
BcnI	CCSGG	3 cut(s)	41, 59, 296
BcoDI	GTCTC	6 cut(s)	18, 30, 48, 60, 66, 84
BfaI	CTAG	2 cut(s)	555, 616
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	550
BisI	GCNGC	9 cut(s)	169, 268, 271, 286, 317, 395, 409, 574, 577
BlsI	GCNGC	9 cut(s)	170, 269, 272, 287, 318, 396, 410, 575, 578
Bme1390I	CCNGG	3 cut(s)	41, 59, 296
Bme18I	GGWCC	2 cut(s)	61, 346
BmgT120I	GGNCC	4 cut(s)	61, 346, 513, 534
BmiI	GGNNCC	2 cut(s)	62, 514
BmrFI	CCNGG	3 cut(s)	41, 59, 296
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	231
BpuMI	CCSGG	3 cut(s)	41, 59, 296
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	79
BsaI	GGTCTC	2 cut(s)	30, 48
BsaJI	CCNNGG	2 cut(s)	294, 574
BsaWI	WCCGGW	2 cut(s)	138, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 209, 239
Bsc4I	CCNNNNNNNGG	6 cut(s)	58, 198, 295, 355, 495, 509
Bse118I	RCCGGY	3 cut(s)	348, 502, 588
Bse3DI	GCAATG	1 cut(s)	593
Bse8I	GATNNNNATC	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	294, 574
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	6 cut(s)	58, 198, 295, 355, 495, 509
BseMI	GCAATG	1 cut(s)	593
BseRI	GAGGAG	2 cut(s)	350, 353
BseXI	GCAGC	4 cut(s)	180, 297, 406, 420
BsgI	GTGCAG	1 cut(s)	527
Bsh1236I	CGCG	7 cut(s)	129, 187, 199, 304, 316, 321, 576
Bsh1285I	CGRYCG	3 cut(s)	97, 133, 203
BshFI	GGCC	3 cut(s)	515, 536, 592
BsiEI	CGRYCG	3 cut(s)	97, 133, 203
BsiHKAI	GWGCWC	1 cut(s)	178
BsiWI	CGTACG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	6 cut(s)	58, 198, 295, 355, 495, 509
BsmAI	GTCTC	6 cut(s)	18, 30, 48, 60, 66, 84
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	515, 536, 592
Bso31I	GGTCTC	2 cut(s)	30, 48
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	100, 106
BspANI	GGCC	3 cut(s)	515, 536, 592
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	7 cut(s)	129, 187, 199, 304, 316, 321, 576
BspLI	GGNNCC	2 cut(s)	62, 514
BspMAI	CTGCAG	1 cut(s)	604
BspTNI	GGTCTC	2 cut(s)	30, 48
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	593
BsrFI	RCCGGY	3 cut(s)	348, 502, 588
BssAI	RCCGGY	3 cut(s)	348, 502, 588
BssECI	CCNNGG	2 cut(s)	294, 574
BssMI	GATC	2 cut(s)	100, 106
BssNI	GRCGYC	1 cut(s)	79
Bst4CI	ACNGT	6 cut(s)	98, 116, 122, 134, 331, 561
BstACI	GRCGYC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	5 cut(s)	178, 197, 312, 551, 600
BstDSI	CCRYGG	1 cut(s)	574
BstFNI	CGCG	7 cut(s)	129, 187, 199, 304, 316, 321, 576
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	6 cut(s)	168, 189, 316, 321, 549, 609
BstKTI	GATC	2 cut(s)	103, 109
BstMAI	GTCTC	6 cut(s)	18, 30, 48, 60, 66, 84
BstMBI	GATC	2 cut(s)	100, 106
BstMCI	CGRYCG	3 cut(s)	97, 133, 203
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 186, 264, 316, 400, 604
BstSCI	CCNGG	3 cut(s)	39, 57, 294
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	7 cut(s)	129, 187, 199, 304, 316, 321, 576
BstV1I	GCAGC	4 cut(s)	180, 297, 406, 420
BstV2I	GAAGAC	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	515, 536, 592
BtgI	CCRYGG	1 cut(s)	574
Cac8I	GCNNGC	5 cut(s)	178, 197, 312, 551, 600
CfoI	GCGC	6 cut(s)	168, 189, 316, 321, 549, 609
Cfr10I	RCCGGY	3 cut(s)	348, 502, 588
Cfr13I	GGNCC	4 cut(s)	61, 346, 513, 534
Cfr42I	CCGCGG	1 cut(s)	577
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	156, 214, 562
CviAII	CATG	1 cut(s)	565
CviJI	RGCY	6 cut(s)	288, 502, 515, 536, 553, 592
CviKI_1	RGCY	6 cut(s)	288, 502, 515, 536, 553, 592
CviQI	GTAC	3 cut(s)	156, 214, 562
DpnI	GATC	2 cut(s)	102, 108
DpnII	GATC	2 cut(s)	100, 106
EaeI	YGGCCR	1 cut(s)	590
EciI	GGCGGA	1 cut(s)	594
Eco31I	GGTCTC	2 cut(s)	30, 48
Eco47I	GGWCC	2 cut(s)	61, 346
EcoRI	GAATTC	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	1 cut(s)	568
FaiI	YATR	1 cut(s)	566
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	564
FauI	CCCGC	2 cut(s)	200, 248
Fnu4HI	GCNGC	9 cut(s)	169, 268, 271, 286, 317, 395, 409, 574, 577
Fsp4HI	GCNGC	9 cut(s)	169, 268, 271, 286, 317, 395, 409, 574, 577
FspBI	CTAG	2 cut(s)	555, 616
GlaI	GCGC	6 cut(s)	167, 188, 315, 320, 548, 608
GluI	GCNGC	9 cut(s)	169, 268, 271, 286, 317, 395, 409, 574, 577
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	3 cut(s)	515, 536, 592
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	6 cut(s)	168, 189, 316, 321, 549, 609
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	6 cut(s)	166, 187, 314, 319, 547, 607
HinP1I	GCGC	6 cut(s)	166, 187, 314, 319, 547, 607
HinfI	GANTC	4 cut(s)	48, 299, 469, 485
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	53, 367
Hpy188III	TCNNGA	5 cut(s)	104, 110, 139, 248, 541
HpyAV	CCTTC	4 cut(s)	337, 349, 382, 487
HpyCH4III	ACNGT	6 cut(s)	98, 116, 122, 134, 331, 561
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	508, 602
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 186, 264, 316, 400, 604
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	6 cut(s)	166, 187, 314, 319, 547, 607
Kpn2I	TCCGGA	1 cut(s)	138
KspI	CCGCGG	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	100, 106
LmnI	GCTCC	6 cut(s)	141, 163, 194, 230, 263, 391
Lsp1109I	GCAGC	4 cut(s)	180, 297, 406, 420
MaeI	CTAG	2 cut(s)	555, 616
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	7 cut(s)	83, 110, 116, 122, 150, 325, 538
MalI	GATC	2 cut(s)	102, 108
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	2 cut(s)	100, 106
MboII	GAAGA	2 cut(s)	263, 469
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	345
MroI	TCCGGA	1 cut(s)	138
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	2 cut(s)	411, 576
MspR9I	CCNGG	3 cut(s)	41, 59, 296
MteI	GCGCNGCGC	1 cut(s)	317
MvnI	CGCG	7 cut(s)	129, 187, 199, 304, 316, 321, 576
MwoI	GCNNNNNNNGC	6 cut(s)	177, 186, 264, 316, 400, 604
NciI	CCSGG	3 cut(s)	41, 59, 296
NdeII	GATC	2 cut(s)	100, 106
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	2 cut(s)	62, 514
NmuCI	GTSAC	7 cut(s)	83, 110, 116, 122, 150, 325, 538
PfeI	GAWTC	3 cut(s)	48, 469, 485
Pfl23II	CGTACG	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	9 cut(s)	170, 269, 272, 287, 318, 396, 410, 575, 578
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	155
PspLI	CGTACG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	62, 514
PspPI	GGNCC	4 cut(s)	61, 346, 513, 534
PstI	CTGCAG	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	3 cut(s)	157, 215, 563
RsaNI	GTAC	3 cut(s)	156, 214, 562
SacII	CCGCGG	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	9 cut(s)	169, 268, 271, 286, 317, 395, 409, 574, 577
Sau3AI	GATC	2 cut(s)	100, 106
Sau96I	GGNCC	4 cut(s)	61, 346, 513, 534
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	41, 59, 296
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	5 cut(s)	152, 157, 327, 360, 447
SfcI	CTRYAG	1 cut(s)	600
Sfr303I	CCGCGG	1 cut(s)	577
SgrBI	CCGCGG	1 cut(s)	577
SinI	GGWCC	2 cut(s)	61, 346
Sse9I	AATT	1 cut(s)	368
SspMI	CTAG	2 cut(s)	555, 616
StyD4I	CCNGG	3 cut(s)	39, 57, 294
TaaI	ACNGT	6 cut(s)	98, 116, 122, 134, 331, 561
TaiI	ACGT	1 cut(s)	157
TaqII	GACCGA	2 cut(s)	24, 78
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	5 cut(s)	270, 273, 319, 576, 579
TfiI	GAWTC	3 cut(s)	48, 469, 485
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseFI	GTSAC	7 cut(s)	83, 110, 116, 122, 150, 325, 538
TseI	GCWGC	4 cut(s)	168, 285, 394, 408
Tsp45I	GTSAC	7 cut(s)	83, 110, 116, 122, 150, 325, 538
TspDTI	ATGAA	2 cut(s)	470, 581
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	61, 346
XapI	RAATTY	1 cut(s)	368
XspI	CTAG	2 cut(s)	555, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.