Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001405.1

Orthogroup ID

OG0010002

Physical Location & Seq

Genomic Coordinates Forward (+)

33440 .. 34248

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001405.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgctagagtcaagtcagaactgcatggttcataacagtaatttacatgccagaatcaagaggtcacgtacgccggagcgcagcagagcacgccacacacgctcccgcacgcgctcgccggacttgtaccactcacgctccctctcccgttcccgcactccagaagaccgctcccaccgccgccgccaccaccaccgcagcccctccccggagtcgcggaagcgtgcgcggcgcgaggcgacggtggaggaggagaaggaccggcagaaggtggtgtcggaattcgtggaggggattgcgaaggagcagcagaagcagagcagcggtggtggagagggcggtgcggacgaggacgaggttgagatgatgaagaagttggggattccggtagggtttgattccacgaaggggaagccggtgcagggggccgatgtgagtggtgttagggccgtcacgaagcgccagcctagacagtacatgaaccgccgcggcggatttaaccggccattgcctgcagagcgcaatcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1777

Protein Analysis

176

Amino Acids

20.23

Weight (kDa)

11.17

Isoelectric Point (pI)

99.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57370
fragaria_vesca	FvH4_4g07990 FvH4_4g07990 FvH4_4g07990
malus_domestica	MD13G1252200.v1.1 MD16G1256400.v1.1
prunus_persica	Prupe.1G084400_v2.0.a1
pyrus_communis	pycom13g22590 pycom16g21750
rosa_chinensis	RchiOBHm_Chr4g0401721
rosa_laevigata	RLG00000009139
rosa_multiflora	Rmu_sc0001405.1_g000006 Rmu_sc0001405.1_g000007 Rmu_sc0001405.1_g000008
rosa_roxburghii	Rroxscaffold_5G00346190
rosa_rugosa	Rorug04G0031300 Rorug04G0031300
rosa_samantha	Rh4AG108400 Rh4BG102200 Rh4CG116600 Rh4DG100100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	171
AccII	CGCG	5 cut(s)	112, 217, 229, 234, 489
AcoI	YGGCCR	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	3 cut(s)	70, 128, 476
AfiI	CCNNNNNNNGG	4 cut(s)	208, 268, 408, 422
Alw21I	GWGCWC	1 cut(s)	91
AoxI	GGCC	3 cut(s)	426, 447, 503
ApeKI	GCWGC	4 cut(s)	81, 198, 307, 321
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	6 cut(s)	81, 114, 229, 234, 462, 522
AspS9I	GGNCC	3 cut(s)	259, 426, 447
AsuC2I	CCSGG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	4 cut(s)	93, 210, 319, 333
BceAI	ACGGC	1 cut(s)	434
BcnI	CCSGG	1 cut(s)	209
BfaI	CTAG	3 cut(s)	5, 468, 529
BfmI	CTRYAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	463
BisI	GCNGC	9 cut(s)	82, 181, 184, 199, 230, 308, 322, 487, 490
BlsI	GCNGC	9 cut(s)	83, 182, 185, 200, 231, 309, 323, 488, 491
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	259, 426, 447
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	207, 487
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 122, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 268, 408, 422
Bse118I	RCCGGY	3 cut(s)	261, 415, 501
Bse3DI	GCAATG	1 cut(s)	506
BseDI	CCNNGG	2 cut(s)	207, 487
BseLI	CCNNNNNNNGG	4 cut(s)	208, 268, 408, 422
BseMI	GCAATG	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	263, 266
BseXI	GCAGC	4 cut(s)	93, 210, 319, 333
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	5 cut(s)	112, 217, 229, 234, 489
BshFI	GGCC	3 cut(s)	428, 449, 505
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	7 cut(s)	74, 119, 209, 262, 386, 416, 502
BsiWI	CGTACG	1 cut(s)	68
BslI	CCNNNNNNNGG	4 cut(s)	208, 268, 408, 422
BsnI	GGCC	3 cut(s)	428, 449, 505
Bsp1286I	GDGCHC	1 cut(s)	91
BspANI	GGCC	3 cut(s)	428, 449, 505
BspFNI	CGCG	5 cut(s)	112, 217, 229, 234, 489
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	517
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	3 cut(s)	261, 415, 501
BssAI	RCCGGY	3 cut(s)	261, 415, 501
BssECI	CCNNGG	2 cut(s)	207, 487
Bst4CI	ACNGT	3 cut(s)	38, 244, 474
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	6 cut(s)	91, 110, 116, 225, 464, 513
BstDSI	CCRYGG	1 cut(s)	487
BstFNI	CGCG	5 cut(s)	112, 217, 229, 234, 489
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	6 cut(s)	81, 114, 229, 234, 462, 522
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 99, 177, 229, 313, 517
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	5 cut(s)	112, 217, 229, 234, 489
BstV1I	GCAGC	4 cut(s)	93, 210, 319, 333
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	428, 449, 505
BtgI	CCRYGG	1 cut(s)	487
Cac8I	GCNNGC	6 cut(s)	91, 110, 116, 225, 464, 513
CfoI	GCGC	6 cut(s)	81, 114, 229, 234, 462, 522
Cfr10I	RCCGGY	3 cut(s)	261, 415, 501
Cfr13I	GGNCC	3 cut(s)	259, 426, 447
Cfr42I	CCGCGG	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	69, 127, 475
CviAII	CATG	3 cut(s)	25, 47, 478
CviJI	RGCY	6 cut(s)	201, 415, 428, 449, 466, 505
CviKI_1	RGCY	6 cut(s)	201, 415, 428, 449, 466, 505
CviQI	GTAC	3 cut(s)	69, 127, 475
EaeI	YGGCCR	1 cut(s)	503
EciI	GGCGGA	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	281
FaeI	CATG	3 cut(s)	28, 50, 481
FaiI	YATR	4 cut(s)	26, 33, 48, 479
FatI	CATG	3 cut(s)	24, 46, 477
FauI	CCCGC	2 cut(s)	113, 161
Fnu4HI	GCNGC	9 cut(s)	82, 181, 184, 199, 230, 308, 322, 487, 490
Fsp4HI	GCNGC	9 cut(s)	82, 181, 184, 199, 230, 308, 322, 487, 490
FspBI	CTAG	3 cut(s)	5, 468, 529
GlaI	GCGC	6 cut(s)	80, 113, 228, 233, 461, 521
GluI	GCNGC	9 cut(s)	82, 181, 184, 199, 230, 308, 322, 487, 490
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	3 cut(s)	428, 449, 505
HapII	CCGG	7 cut(s)	74, 119, 209, 262, 386, 416, 502
HhaI	GCGC	6 cut(s)	81, 114, 229, 234, 462, 522
Hin1II	CATG	3 cut(s)	28, 50, 481
Hin6I	GCGC	6 cut(s)	79, 112, 227, 232, 460, 520
HinP1I	GCGC	6 cut(s)	79, 112, 227, 232, 460, 520
HinfI	GANTC	5 cut(s)	8, 54, 212, 382, 398
HpaII	CCGG	7 cut(s)	74, 119, 209, 262, 386, 416, 502
Hpy188I	TCNGA	2 cut(s)	18, 280
Hpy188III	TCNNGA	3 cut(s)	58, 161, 454
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	250, 262, 295, 400
HpyCH4III	ACNGT	3 cut(s)	38, 244, 474
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	24, 421, 515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 99, 177, 229, 313, 517
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	28, 50, 481
HspAI	GCGC	6 cut(s)	79, 112, 227, 232, 460, 520
KspI	CCGCGG	1 cut(s)	490
LmnI	GCTCC	5 cut(s)	76, 107, 143, 176, 304
Lsp1109I	GCAGC	4 cut(s)	93, 210, 319, 333
MaeI	CTAG	3 cut(s)	5, 468, 529
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	63, 451
MbiI	CCGCTC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	176, 382
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	40, 281
MlyI	GAGTC	2 cut(s)	17, 221
MmeI	TCCRAC	1 cut(s)	258
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	2 cut(s)	324, 489
MspI	CCGG	7 cut(s)	74, 119, 209, 262, 386, 416, 502
MspR9I	CCNGG	1 cut(s)	209
MteI	GCGCNGCGC	1 cut(s)	230
MvnI	CGCG	5 cut(s)	112, 217, 229, 234, 489
MwoI	GCNNNNNNNGC	6 cut(s)	90, 99, 177, 229, 313, 517
NciI	CCSGG	1 cut(s)	209
NlaIII	CATG	3 cut(s)	28, 50, 481
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	63, 451
NspI	RCATGY	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	54, 382, 398
Pfl23II	CGTACG	1 cut(s)	68
PkrI	GCNGC	9 cut(s)	83, 182, 185, 200, 231, 309, 323, 488, 491
PleI	GAGTC	2 cut(s)	16, 220
PpsI	GAGTC	2 cut(s)	16, 220
Ppu21I	YACGTR	1 cut(s)	68
PspLI	CGTACG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	3 cut(s)	259, 426, 447
PstI	CTGCAG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	70, 128, 476
RsaNI	GTAC	3 cut(s)	69, 127, 475
SacII	CCGCGG	1 cut(s)	490
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	9 cut(s)	82, 181, 184, 199, 230, 308, 322, 487, 490
Sau96I	GGNCC	3 cut(s)	259, 426, 447
SchI	GAGTC	2 cut(s)	17, 221
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	65, 70, 273, 360
SfcI	CTRYAG	1 cut(s)	513
Sfr303I	CCGCGG	1 cut(s)	490
SgrBI	CCGCGG	1 cut(s)	490
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	40, 281
SspMI	CTAG	3 cut(s)	5, 468, 529
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	38, 244, 474
TaiI	ACGT	1 cut(s)	70
TasI	AATT	2 cut(s)	40, 281
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	5 cut(s)	183, 186, 232, 489, 492
TfiI	GAWTC	3 cut(s)	54, 382, 398
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	2 cut(s)	63, 451
TseI	GCWGC	4 cut(s)	81, 198, 307, 321
Tsp45I	GTSAC	2 cut(s)	63, 451
TspDTI	ATGAA	3 cut(s)	20, 383, 494
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	3 cut(s)	5, 468, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.