Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010002

Physical Location & Seq

Genomic Coordinates Reverse (-)

47271769 .. 47274939

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGAGACCGAGAAAGAGAGAGAGACAGAGAACGAGACCGGGAGAGAATCCGAGACCGGGACCGGGACCGAGACAGAGACAGAGACAGACGCCGTGACAGAGACGACCGTGATCGTGACCGTGACCGTGACCGTGACCGTGACCGTGTCCGGAGCAAGAGGTCACGTACGCCGGAGCGCAGCAGAGCACGCCACACGCGCTCCCGCACGCGCTCGCCGGACTTGTACCACTCACGCTCCCTCTCCCGTTCCCGCACTCCAGAAGACCGCTCCCACCGCCGCCGCCACCACCACCGCAGCCCCTCCCCGGAGTCGCGGAAGCGTGCCAGGCGCGAGCCGACGGTGGAGGACGAGAAGGACCGGCAGAAGGTGGTGTCGGAATTCGTGGAGGGGATTGCGAAGGAGCAGCAGAAGCAGAGCGGCGGTGGTGGAGAGGGCGGTGCGGACGAGGACGAGGTTGAGATGATGAAGAAGTTGGGGATTCCGGTAGGGTTTGATTCCACGAAAGGGAAGCCGGTGCCGGGGGCCGATAGCGCAATCGCTAGAATACTGGTCCTCAGTGACTTTGATGTTGAAAGGCACCAGCAGGAGAACAATCAATGTGAATTTAAGACAAGTTCTTGTGATTTGATGGAAGTAATGCATCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1777

Protein Analysis

218

Amino Acids

25.9

Weight (kDa)

9.97

Isoelectric Point (pI)

76.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57370
fragaria_vesca	FvH4_4g07990 FvH4_4g07990 FvH4_4g07990
malus_domestica	MD13G1252200.v1.1 MD16G1256400.v1.1
prunus_persica	Prupe.1G084400_v2.0.a1
pyrus_communis	pycom13g22590 pycom16g21750
rosa_chinensis	RchiOBHm_Chr4g0401721
rosa_laevigata	RLG00000009139
rosa_multiflora	Rmu_sc0001405.1_g000006 Rmu_sc0001405.1_g000007 Rmu_sc0001405.1_g000008
rosa_roxburghii	Rroxscaffold_5G00346190
rosa_rugosa	Rorug04G0031300 Rorug04G0031300
rosa_samantha	Rh4AG108400 Rh4BG102200 Rh4CG116600 Rh4DG100100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	517, 579
AccBSI	CCGCTC	2 cut(s)	270, 420
AccII	CGCG	4 cut(s)	199, 211, 316, 333
AccIII	TCCGGA	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	380, 605
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	2 cut(s)	169, 227
AfiI	CCNNNNNNNGG	6 cut(s)	58, 64, 307, 367, 507, 521
AgsI	TTSAA	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	7 cut(s)	18, 30, 48, 66, 72, 78, 96
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	3 cut(s)	180, 297, 406
ApoI	RAATTY	2 cut(s)	380, 605
AspLEI	GCGC	5 cut(s)	180, 201, 213, 333, 536
AspS9I	GGNCC	5 cut(s)	61, 67, 358, 525, 553
AsuC2I	CCSGG	5 cut(s)	41, 59, 65, 308, 522
AvaII	GGWCC	4 cut(s)	61, 67, 358, 553
BanI	GGYRCC	2 cut(s)	517, 579
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	192, 309, 418
BccI	CCATC	1 cut(s)	625
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	5 cut(s)	41, 59, 65, 308, 522
BcoDI	GTCTC	7 cut(s)	18, 30, 48, 66, 72, 78, 96
BfaI	CTAG	1 cut(s)	543
BisI	GCNGC	6 cut(s)	181, 280, 283, 298, 407, 421
BlsI	GCNGC	6 cut(s)	182, 281, 284, 299, 408, 422
Bme1390I	CCNGG	6 cut(s)	41, 59, 65, 308, 328, 522
Bme18I	GGWCC	4 cut(s)	61, 67, 358, 553
BmgT120I	GGNCC	5 cut(s)	61, 67, 358, 525, 553
BmiI	GGNNCC	5 cut(s)	62, 68, 519, 526, 581
BmrFI	CCNGG	6 cut(s)	41, 59, 65, 308, 328, 522
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	5 cut(s)	41, 59, 65, 308, 522
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	2 cut(s)	30, 48
BsaJI	CCNNGG	2 cut(s)	306, 521
BsaWI	WCCGGW	2 cut(s)	150, 484
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 221, 251
Bsc4I	CCNNNNNNNGG	6 cut(s)	58, 64, 307, 367, 507, 521
Bse118I	RCCGGY	2 cut(s)	360, 514
Bse1I	ACTGG	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	306, 521
BseLI	CCNNNNNNNGG	6 cut(s)	58, 64, 307, 367, 507, 521
BseMII	CTCAG	1 cut(s)	571
BseNI	ACTGG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	192, 309, 418
Bsh1236I	CGCG	4 cut(s)	199, 211, 316, 333
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	2 cut(s)	517, 579
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	190
BsiWI	CGTACG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	74, 80
BslI	CCNNNNNNNGG	6 cut(s)	58, 64, 307, 367, 507, 521
BsmAI	GTCTC	7 cut(s)	18, 30, 48, 66, 72, 78, 96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	74, 80
BsnI	GGCC	1 cut(s)	527
Bso31I	GGTCTC	2 cut(s)	30, 48
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	1 cut(s)	570
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	4 cut(s)	199, 211, 316, 333
BspLI	GGNNCC	5 cut(s)	62, 68, 519, 526, 581
BspT107I	GGYRCC	2 cut(s)	517, 579
BspTNI	GGTCTC	2 cut(s)	30, 48
BsrBI	CCGCTC	2 cut(s)	270, 420
BsrFI	RCCGGY	2 cut(s)	360, 514
BsrI	ACTGG	1 cut(s)	555
BssAI	RCCGGY	2 cut(s)	360, 514
BssECI	CCNNGG	2 cut(s)	306, 521
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	7 cut(s)	110, 122, 128, 134, 140, 146, 343
BstACI	GRCGYC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	5 cut(s)	190, 209, 215, 324, 335
BstDEI	CTNAG	1 cut(s)	557
BstFNI	CGCG	4 cut(s)	199, 211, 316, 333
BstHHI	GCGC	5 cut(s)	180, 201, 213, 333, 536
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	7 cut(s)	18, 30, 48, 66, 72, 78, 96
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	6 cut(s)	189, 198, 276, 328, 412, 533
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	6 cut(s)	39, 57, 63, 306, 326, 520
BstUI	CGCG	4 cut(s)	199, 211, 316, 333
BstV1I	GCAGC	3 cut(s)	192, 309, 418
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	5 cut(s)	190, 209, 215, 324, 335
CfoI	GCGC	5 cut(s)	180, 201, 213, 333, 536
Cfr10I	RCCGGY	2 cut(s)	360, 514
Cfr13I	GGNCC	5 cut(s)	61, 67, 358, 525, 553
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	168, 226
CviJI	RGCY	4 cut(s)	300, 337, 514, 527
CviKI_1	RGCY	4 cut(s)	300, 337, 514, 527
CviQI	GTAC	2 cut(s)	168, 226
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco31I	GGTCTC	2 cut(s)	30, 48
Eco47I	GGWCC	4 cut(s)	61, 67, 358, 553
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	96
FaiI	YATR	1 cut(s)	650
FaqI	GGGAC	2 cut(s)	74, 80
FauI	CCCGC	2 cut(s)	212, 260
Fnu4HI	GCNGC	6 cut(s)	181, 280, 283, 298, 407, 421
Fsp4HI	GCNGC	6 cut(s)	181, 280, 283, 298, 407, 421
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	5 cut(s)	179, 200, 212, 332, 535
GluI	GCNGC	6 cut(s)	181, 280, 283, 298, 407, 421
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	527
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	5 cut(s)	180, 201, 213, 333, 536
Hin1I	GRCGYC	1 cut(s)	91
Hin6I	GCGC	5 cut(s)	178, 199, 211, 331, 534
HinP1I	GCGC	5 cut(s)	178, 199, 211, 331, 534
HinfI	GANTC	4 cut(s)	48, 311, 481, 497
Hpy188I	TCNGA	2 cut(s)	53, 379
Hpy188III	TCNNGA	3 cut(s)	116, 151, 260
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	349, 361, 394
HpyCH4III	ACNGT	7 cut(s)	110, 122, 128, 134, 140, 146, 343
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	6 cut(s)	189, 198, 276, 328, 412, 533
HpyF3I	CTNAG	1 cut(s)	557
HpySE526I	ACGT	1 cut(s)	166
Hsp92I	GRCGYC	1 cut(s)	91
HspAI	GCGC	5 cut(s)	178, 199, 211, 331, 534
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	6 cut(s)	153, 175, 206, 242, 275, 403
Lsp1109I	GCAGC	3 cut(s)	192, 309, 418
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	8 cut(s)	95, 116, 122, 128, 134, 140, 162, 560
MalI	GATC	1 cut(s)	114
MbiI	CCGCTC	2 cut(s)	270, 420
MboI	GATC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	275, 481
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	380, 605
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	153, 251, 313, 340, 382, 427, 442, 448, 566
Mph1103I	ATGCAT	1 cut(s)	645
MroI	TCCGGA	1 cut(s)	150
MseI	TTAA	1 cut(s)	609
MspR9I	CCNGG	6 cut(s)	41, 59, 65, 308, 328, 522
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	4 cut(s)	199, 211, 316, 333
MwoI	GCNNNNNNNGC	6 cut(s)	189, 198, 276, 328, 412, 533
NciI	CCSGG	5 cut(s)	41, 59, 65, 308, 522
NdeII	GATC	1 cut(s)	112
NlaIV	GGNNCC	5 cut(s)	62, 68, 519, 526, 581
NmuCI	GTSAC	8 cut(s)	95, 116, 122, 128, 134, 140, 162, 560
NsiI	ATGCAT	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	48, 481, 497
Pfl23II	CGTACG	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	182, 281, 284, 299, 408, 422
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspLI	CGTACG	1 cut(s)	167
PspN4I	GGNNCC	5 cut(s)	62, 68, 519, 526, 581
PspPI	GGNCC	5 cut(s)	61, 67, 358, 525, 553
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	169, 227
RsaNI	GTAC	2 cut(s)	168, 226
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	6 cut(s)	181, 280, 283, 298, 407, 421
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	5 cut(s)	61, 67, 358, 525, 553
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	6 cut(s)	41, 59, 65, 308, 328, 522
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	4 cut(s)	164, 169, 372, 459
SinI	GGWCC	4 cut(s)	61, 67, 358, 553
Sse9I	AATT	2 cut(s)	380, 605
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	6 cut(s)	39, 57, 63, 306, 326, 520
TaaI	ACNGT	7 cut(s)	110, 122, 128, 134, 140, 146, 343
TaiI	ACGT	1 cut(s)	169
TaqII	GACCGA	2 cut(s)	24, 84
TasI	AATT	2 cut(s)	380, 605
TauI	GCSGC	3 cut(s)	282, 285, 423
TfiI	GAWTC	3 cut(s)	48, 481, 497
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	8 cut(s)	95, 116, 122, 128, 134, 140, 162, 560
TseI	GCWGC	3 cut(s)	180, 297, 406
Tsp45I	GTSAC	8 cut(s)	95, 116, 122, 128, 134, 140, 162, 560
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	4 cut(s)	61, 67, 358, 553
XapI	RAATTY	2 cut(s)	380, 605
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.