Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009655

Physical Location & Seq

Genomic Coordinates Forward (+)

10053209 .. 10054601

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G128800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGTGTCATCACGTGTACAGATGAGTACACTTCCCCAATCCCTCCAGACAGGTTGTTCAAGGCCTTGGTCCTTGATGCTCACAACCTTGTCCCAAACCTCATGCCTCAAGCTGTTAAGAGCATTGACACCCTCCAAGGTGATGGAAGGGCAGGAAGCATCAAGCAATTCAACTTCGCTGAAGGTAGCGAACTAAAATCTGTGAAAAACCGTGTTGATCAGGTGGATGAAGAGAACTTTGTATATGGCTACACCTTGATTGAAGGAGATGCATTAATAATGGAGAAACTTGAATACGTTTCTTATGAGGTTAAGTTTGAGGCTGCAGAAGATGGTGGTAGTAAGAACAAGATGGTGAGCAAGTACCACACCAAGGGTGACTTTGTGCTGCAAGAGGAAGATATAAAAACTGGCAGGGAAAAGGCATTGGGGATGTACAAAGTCGTAGAAGCCTACCTCCTCCAAAACCCTGATGCCTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

162

Amino Acids

18.0

Weight (kDa)

4.75

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26151 FvH4_4g18970
malus_domestica	MD03G1292500.v1.1 MD16G1160800.v1.1
prunus_persica	Prupe.1G128800_v2.0.a1 Prupe.8G265500_v2.0.a1
pyrus_communis	pycom03g23170
rosa_chinensis	RchiOBHm_Chr4g0423871 RchiOBHm_Chr6g0294541
rosa_laevigata	RLG00000007524 RLG00000011861
rosa_multiflora	Rmu_sc0003369.1_g000002 Rmu_sc0004268.1_g000002 Rmu_sc0004268.1_g000005 Rmu_ssc0000248.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173240
rosa_rugosa	Rorug04G0191500 Rorug06G0245900
rosa_samantha	Rh4CG264300 Rh6AG358200
rosa_wichuraiana	Rw4G021500 Rw6G031240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	15
AfaI	GTAC	4 cut(s)	19, 29, 365, 437
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	61, 172, 263, 293
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	323, 388
AseI	ATTAAT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	152, 367, 389
AvaII	GGWCC	1 cut(s)	70
BbrPI	CACGTG	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	310, 375
BccI	CCATC	3 cut(s)	137, 326, 346
BclI	TGATCA	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	324, 389
BlsI	GCNGC	2 cut(s)	325, 390
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmsI	GCATC	4 cut(s)	67, 168, 259, 463
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	66, 136, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	66, 136, 372
BseGI	GGATG	2 cut(s)	232, 438
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	310, 375
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	65
Bsp1407I	TGTACA	2 cut(s)	17, 435
Bsp143I	GATC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	328
BsrGI	TGTACA	2 cut(s)	17, 435
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	3 cut(s)	66, 136, 372
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	3 cut(s)	66, 136, 372
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	225
BstAUI	TGTACA	2 cut(s)	17, 435
BstBAI	YACGTR	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	232, 438
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	310, 375
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	232, 438
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	18, 28, 364, 436
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	65, 113, 249, 323, 452
CviKI_1	RGCY	5 cut(s)	65, 113, 249, 323, 452
CviQI	GTAC	4 cut(s)	18, 28, 364, 436
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	3 cut(s)	66, 136, 372
Eco147I	AGGCCT	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	15
EcoT14I	CCWWGG	3 cut(s)	66, 136, 372
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	66, 136, 372
FaeI	CATG	1 cut(s)	106
FaiI	YATR	6 cut(s)	104, 244, 246, 306, 404, 480
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	324, 389
FokI	GGATG	2 cut(s)	239, 445
Fsp4HI	GCNGC	2 cut(s)	324, 389
GluI	GCNGC	2 cut(s)	324, 389
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	106
HphI	GGTGA	3 cut(s)	152, 367, 389
Hpy166II	GTNNAC	2 cut(s)	18, 30
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	18, 30
HpyAV	CCTTC	3 cut(s)	141, 176, 257
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	2 cut(s)	14, 297
HpyCH4V	TGCA	3 cut(s)	272, 326, 391
HpySE526I	ACGT	2 cut(s)	14, 297
Hsp92II	CATG	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	37, 60, 138, 206, 396, 400
Lsp1109I	GCAGC	2 cut(s)	310, 375
LweI	GCATC	4 cut(s)	67, 168, 259, 463
MaeII	ACGT	2 cut(s)	14, 297
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	242, 341, 410
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	9 cut(s)	54, 110, 117, 143, 301, 313, 388, 467, 470
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	4 cut(s)	117, 275, 312, 484
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	325, 390
PmaCI	CACGTG	1 cut(s)	15
PmlI	CACGTG	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	328
RsaI	GTAC	4 cut(s)	19, 29, 365, 437
RsaNI	GTAC	4 cut(s)	18, 28, 364, 436
SaqAI	TTAA	4 cut(s)	117, 275, 312, 484
SatI	GCNGC	2 cut(s)	324, 389
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	70
SfaNI	GCATC	4 cut(s)	67, 168, 259, 463
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	167
SseBI	AGGCCT	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	3 cut(s)	66, 136, 372
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	2 cut(s)	17, 300
TasI	AATT	1 cut(s)	167
TatI	WGTACW	3 cut(s)	17, 27, 435
Tru1I	TTAA	4 cut(s)	117, 275, 312, 484
Tru9I	TTAA	4 cut(s)	117, 275, 312, 484
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	323, 388
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.