Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009655

Physical Location & Seq

Genomic Coordinates Reverse (-)

23091632 .. 23093323

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGTTCCATAAGTTTGAGCCAGGAATTTACAAGTCCAGTTGCTGCAGACAGGTTATTCAAGGCCTTGATCATAGACTCCCACAATCTCATCCCCAAGCTCATGCCTCAGGCCATCAAGAGCATCGAAATCATCCACGGCGACGGCGGCGCAGGAAGCATCAAGCAGATCAACTTTGCTGAGGGTACGCGTTATAAGTACATGAAGAACAGAATAGACGCACTGGACGTGGAGAATTTGGTGTGCAAGTACACTCTGATTGAAGGAGATGTATTGGCGGACAAGATTAAGTCCATTTCTTATGAGGTAAGCTTTCAAGCTTCCCCTAACGGCGGATGTACTTGTAAGATGATGAGTGAGTACCACGCCGCCGGTGACTTGGAGATCAATGAGGAAGAAATCAGGGGTGGCAAAGAAAGAGCAATGAGCATGTACAAGGTTGTTGAAGCTTACCTCTTCGAAAGTCCCGGGGCTTACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

5.15

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26151 FvH4_4g18970
malus_domestica	MD03G1292500.v1.1 MD16G1160800.v1.1
prunus_persica	Prupe.1G128800_v2.0.a1 Prupe.8G265500_v2.0.a1
pyrus_communis	pycom03g23170
rosa_chinensis	RchiOBHm_Chr4g0423871 RchiOBHm_Chr6g0294541
rosa_laevigata	RLG00000007524 RLG00000011861
rosa_multiflora	Rmu_sc0003369.1_g000002 Rmu_sc0004268.1_g000002 Rmu_sc0004268.1_g000005 Rmu_ssc0000248.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173240
rosa_rugosa	Rorug04G0191500 Rorug06G0245900
rosa_samantha	Rh4CG264300 Rh6AG358200
rosa_wichuraiana	Rw4G021500 Rw6G031240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccII	CGCG	1 cut(s)	190
AciI	CCGC	4 cut(s)	147, 278, 333, 369
AcsI	RAATTY	2 cut(s)	26, 235
AfaI	GTAC	6 cut(s)	187, 200, 251, 340, 362, 434
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	61, 263, 317, 446
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	4 cut(s)	100, 312, 320, 449
AluI	AGCT	4 cut(s)	100, 312, 320, 449
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	63, 111
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	26, 235
AspLEI	GCGC	1 cut(s)	152
AsuC2I	CCSGG	2 cut(s)	468, 469
AsuHPI	GGTGA	1 cut(s)	386
AsuII	TTCGAA	1 cut(s)	459
AvaI	CYCGRG	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	3 cut(s)	154, 160, 346
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	468, 469
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	3 cut(s)	45, 148, 369
BlsI	GCNGC	3 cut(s)	46, 149, 370
Bme1390I	CCNGG	3 cut(s)	23, 468, 469
BmeT110I	CYCGRG	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	23, 468, 469
BmsI	GCATC	2 cut(s)	132, 168
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	468, 469
BsaJI	CCNNGG	3 cut(s)	136, 467, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	38, 228
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	136, 467, 468
BseGI	GGATG	3 cut(s)	90, 132, 341
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	122, 171
BseNI	ACTGG	2 cut(s)	38, 228
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	65, 113
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	372, 468
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	65, 113
BsoBI	CYCGRG	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	69, 168, 384
BspACI	CCGC	4 cut(s)	147, 278, 333, 369
BspANI	GGCC	2 cut(s)	65, 113
BspCNI	CTCAG	2 cut(s)	121, 172
BspFNI	CGCG	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	38, 228
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	136, 467, 468
BssMI	GATC	3 cut(s)	69, 168, 384
Bst2UI	CCWGG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	108, 180
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	90, 132, 341
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	72, 171, 387
BstMBI	GATC	3 cut(s)	69, 168, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 156
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	3 cut(s)	21, 466, 467
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	65, 113
BtgI	CCRYGG	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	90, 132, 341
BtsIMutI	CAGTG	1 cut(s)	221
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	371
Cfr9I	CCCGGG	1 cut(s)	467
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	6 cut(s)	186, 199, 250, 339, 361, 433
CviAII	CATG	3 cut(s)	103, 202, 430
CviJI	RGCY	8 cut(s)	21, 65, 100, 113, 312, 320, 449, 473
CviKI_1	RGCY	8 cut(s)	21, 65, 100, 113, 312, 320, 449, 473
CviQI	GTAC	6 cut(s)	186, 199, 250, 339, 361, 433
DdeI	CTNAG	2 cut(s)	108, 180
DpnI	GATC	3 cut(s)	71, 170, 386
DpnII	GATC	3 cut(s)	69, 168, 384
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	2 cut(s)	293, 348
Eco147I	AGGCCT	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	106, 205, 433
FaiI	YATR	7 cut(s)	11, 74, 104, 195, 203, 303, 431
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	102, 201, 429
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	45, 148, 369
FokI	GGATG	3 cut(s)	77, 119, 348
Fsp4HI	GCNGC	3 cut(s)	45, 148, 369
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	3 cut(s)	45, 148, 369
HaeIII	GGCC	2 cut(s)	65, 113
HapII	CCGG	2 cut(s)	372, 468
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	106, 205, 433
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	3 cut(s)	310, 318, 447
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	372, 468
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	47, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 156
HpyF3I	CTNAG	2 cut(s)	108, 180
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	106, 205, 433
HspAI	GCGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	69, 168, 384
LpnPI	CCDG	9 cut(s)	8, 35, 37, 51, 95, 138, 209, 385, 388
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	132, 168
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	71, 170, 386
MboI	GATC	3 cut(s)	69, 168, 384
MboII	GAAGA	3 cut(s)	217, 407, 448
MluCI	AATT	2 cut(s)	26, 235
MluI	ACGCGT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	117, 175, 298, 385, 464
MseI	TTAA	1 cut(s)	288
MspI	CCGG	2 cut(s)	372, 468
MspR9I	CCNGG	3 cut(s)	23, 468, 469
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	147, 156
NciI	CCSGG	2 cut(s)	468, 469
NdeII	GATC	3 cut(s)	69, 168, 384
NlaIII	CATG	3 cut(s)	106, 205, 433
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	46, 149, 370
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	6 cut(s)	187, 200, 251, 340, 362, 434
RsaNI	GTAC	6 cut(s)	186, 199, 250, 339, 361, 433
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	45, 148, 369
Sau3AI	GATC	3 cut(s)	69, 168, 384
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	23, 468, 469
SetI	ASST	9 cut(s)	56, 102, 231, 309, 314, 322, 441, 451, 456
SfaNI	GCATC	2 cut(s)	132, 168
SfcI	CTRYAG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	459
SgrAI	CRCCGGYG	1 cut(s)	371
SmaI	CCCGGG	1 cut(s)	469
Sse9I	AATT	2 cut(s)	26, 235
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	4 cut(s)	147, 278, 333, 369
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	21, 466, 467
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	126, 459
TasI	AATT	2 cut(s)	26, 235
TatI	WGTACW	4 cut(s)	198, 249, 338, 432
TauI	GCSGC	2 cut(s)	150, 371
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	218
TspMI	CCCGGG	1 cut(s)	467
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	26, 235
XceI	RCATGY	1 cut(s)	433
XmaI	CCCGGG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.