Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009655

Physical Location & Seq

Genomic Coordinates Reverse (-)

22229359 .. 22230571

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGGCCATCAGTTTAAGCCAGGAATTTGCTAGTCCAGTAGCAGCGGCCAGGTTGTTCAAGGCCTTGATCCTAGACTCCCACAACCTCATCCCCAAGCTCATGCCTCAGGCCATTAAGAGCATCGAAATCATCCACGGCGATGGAGGCGAAGGAAGCATCAAGCAGATCAATTTTGCTGAGGGTACTCGTTACAAGTACATGAAGAACAGAATAGACATCCTGGACGTTGAGAATTTGGTATGCAAGTACACACTGATTGAAGGAGACGTGTTGGAGGACAAGATTAAGTCTATTGCTTACGAGGTGAGGTTTGAGGCTTCTCCTAATGGTGGTTGTACTTGCAAGATGATGAGTGAGTACCAGGCTGCTGGTGACTTTGAGATCAATGAGGAAGAAATCAGGGGTGGCAAAGAAAGAGCAATGGGCATGTACAAGGTTGTTGAAGCTTACCTCTTCGAAAGTCCCGGTGCCTACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

4.98

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26151 FvH4_4g18970
malus_domestica	MD03G1292500.v1.1 MD16G1160800.v1.1
prunus_persica	Prupe.1G128800_v2.0.a1 Prupe.8G265500_v2.0.a1
pyrus_communis	pycom03g23170
rosa_chinensis	RchiOBHm_Chr4g0423871 RchiOBHm_Chr6g0294541
rosa_laevigata	RLG00000007524 RLG00000011861
rosa_multiflora	Rmu_sc0003369.1_g000002 Rmu_sc0004268.1_g000002 Rmu_sc0004268.1_g000005 Rmu_ssc0000248.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173240
rosa_rugosa	Rorug04G0191500 Rorug06G0245900
rosa_samantha	Rh4CG264300 Rh6AG358200
rosa_wichuraiana	Rw4G021500 Rw6G031240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AciI	CCGC	2 cut(s)	5, 47
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	2 cut(s)	6, 48
AcsI	RAATTY	2 cut(s)	26, 235
AfaI	GTAC	6 cut(s)	187, 200, 251, 340, 362, 434
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	61, 263, 446
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	4 cut(s)	21, 50, 222, 363
AluBI	AGCT	2 cut(s)	100, 449
AluI	AGCT	2 cut(s)	100, 449
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	4 cut(s)	6, 48, 63, 111
ApeKI	GCWGC	2 cut(s)	44, 368
ApoI	RAATTY	2 cut(s)	26, 235
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	319, 386
AsuII	TTCGAA	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	56, 355
BccI	CCATC	2 cut(s)	17, 137
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	4 cut(s)	23, 52, 224, 365
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	33, 74
BisI	GCNGC	4 cut(s)	6, 45, 48, 369
BlsI	GCNGC	4 cut(s)	7, 46, 49, 370
Bme1390I	CCNGG	5 cut(s)	23, 52, 224, 365, 468
BmgBI	CACGTC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	5 cut(s)	23, 52, 224, 365, 468
BmsI	GCATC	2 cut(s)	132, 168
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	38
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	4 cut(s)	23, 52, 224, 365
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	90, 132, 219
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	122, 171
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	56, 355
BshFI	GGCC	4 cut(s)	8, 50, 65, 113
BshNI	GGYRCC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	8, 50, 65, 113
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	69, 168, 384
BspACI	CCGC	2 cut(s)	5, 47
BspANI	GGCC	4 cut(s)	8, 50, 65, 113
BspCNI	CTCAG	2 cut(s)	121, 172
BspLI	GGNNCC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	69, 168, 384
Bst2UI	CCWGG	4 cut(s)	23, 52, 224, 365
Bst6I	CTCTTC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	108, 180
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	90, 132, 219
BstKTI	GATC	3 cut(s)	72, 171, 387
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	69, 168, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 156
BstNI	CCWGG	4 cut(s)	23, 52, 224, 365
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	5 cut(s)	21, 50, 222, 363, 466
BstV1I	GCAGC	2 cut(s)	56, 355
BstXI	CCANNNNNNTGG	2 cut(s)	143, 371
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	8, 50, 65, 113
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	90, 132, 219
BtsIMutI	CAGTG	1 cut(s)	254
Csp6I	GTAC	6 cut(s)	186, 199, 250, 339, 361, 433
CviAII	CATG	3 cut(s)	103, 202, 430
CviJI	RGCY	9 cut(s)	8, 21, 50, 65, 100, 113, 320, 368, 449
CviKI_1	RGCY	9 cut(s)	8, 21, 50, 65, 100, 113, 320, 368, 449
CviQI	GTAC	6 cut(s)	186, 199, 250, 339, 361, 433
DdeI	CTNAG	2 cut(s)	108, 180
DpnI	GATC	3 cut(s)	71, 170, 386
DpnII	GATC	3 cut(s)	69, 168, 384
EaeI	YGGCCR	2 cut(s)	6, 48
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco147I	AGGCCT	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	4 cut(s)	21, 50, 222, 363
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	3 cut(s)	106, 205, 433
FaiI	YATR	4 cut(s)	104, 203, 244, 431
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	102, 201, 429
Fnu4HI	GCNGC	4 cut(s)	6, 45, 48, 369
FokI	GGATG	3 cut(s)	77, 119, 206
Fsp4HI	GCNGC	4 cut(s)	6, 45, 48, 369
FspBI	CTAG	2 cut(s)	33, 74
GluI	GCNGC	4 cut(s)	6, 45, 48, 369
HaeIII	GGCC	4 cut(s)	8, 50, 65, 113
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	3 cut(s)	106, 205, 433
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	319, 386
Hpy166II	GTNNAC	1 cut(s)	252
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	146, 257
HpyCH4IV	ACGT	2 cut(s)	228, 270
HpyCH4V	TGCA	2 cut(s)	246, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 156
HpyF3I	CTNAG	2 cut(s)	108, 180
HpySE526I	ACGT	2 cut(s)	228, 270
Hsp92II	CATG	3 cut(s)	106, 205, 433
Kzo9I	GATC	3 cut(s)	69, 168, 384
Lsp1109I	GCAGC	2 cut(s)	56, 355
LweI	GCATC	2 cut(s)	132, 168
MaeI	CTAG	2 cut(s)	33, 74
MaeII	ACGT	2 cut(s)	228, 270
MaeIII	GTNAC	2 cut(s)	191, 374
MalI	GATC	3 cut(s)	71, 170, 386
MboI	GATC	3 cut(s)	69, 168, 384
MboII	GAAGA	3 cut(s)	217, 407, 448
MluCI	AATT	3 cut(s)	26, 172, 235
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	255
MseI	TTAA	3 cut(s)	17, 117, 288
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	5 cut(s)	23, 52, 224, 365, 468
MvaI	CCWGG	4 cut(s)	23, 52, 224, 365
MwoI	GCNNNNNNNGC	2 cut(s)	147, 156
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	3 cut(s)	69, 168, 384
NlaIII	CATG	3 cut(s)	106, 205, 433
NlaIV	GGNNCC	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	7, 46, 49, 370
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	4 cut(s)	21, 50, 222, 363
PspGI	CCWGG	4 cut(s)	21, 50, 222, 363
PspN4I	GGNNCC	1 cut(s)	472
RsaI	GTAC	6 cut(s)	187, 200, 251, 340, 362, 434
RsaNI	GTAC	6 cut(s)	186, 199, 250, 339, 361, 433
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	17, 117, 288
SatI	GCNGC	4 cut(s)	6, 45, 48, 369
Sau3AI	GATC	3 cut(s)	69, 168, 384
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	5 cut(s)	23, 52, 224, 365, 468
SfaNI	GCATC	2 cut(s)	132, 168
SfuI	TTCGAA	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	26, 172, 235
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	5, 47
SspMI	CTAG	2 cut(s)	33, 74
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	5 cut(s)	21, 50, 222, 363, 466
TaiI	ACGT	2 cut(s)	231, 273
TaqI	TCGA	2 cut(s)	126, 459
TasI	AATT	3 cut(s)	26, 172, 235
TatI	WGTACW	4 cut(s)	198, 249, 338, 432
TauI	GCSGC	2 cut(s)	8, 50
Tru1I	TTAA	3 cut(s)	17, 117, 288
Tru9I	TTAA	3 cut(s)	17, 117, 288
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	44, 368
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	2 cut(s)	26, 235
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	2 cut(s)	33, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.