Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005900

Physical Location & Seq

Genomic Coordinates Reverse (-)

39211543 .. 39215077

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0245900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGTTCCAAGGAGAACAATCAAGGTCTCGTTAGGCCTGCAAATTTCCAAGGTCCAAGATTGTTGGGGGGTTCCAAGTTTGTGAAGGAGATTGGGCACAATCATCGAGCGGCACTAAGCAATATCACCAATTTCAAAAGAGAGGCCACAGGGAATGATGTGGCTGGTGATAAGAAATTGTCAAATCTGGGACATAGACCCATTACAAGGAGGTTTGCTGCACAAATGGTCCAGCAATGCCCAAAGGAATCTGAGGAAGGCATTGTGACTACATTGGTTCCAAATCCTAGTGGTGTTAGGGACTGTGATCAGGAAATTAAGAAACTGAACTCATCTACCGTCAATCCTAGTGGTCTTGTGGACTGTGAGATCATAGATGTGGAGGACAGTGAGGATGAAGATTCTGATGCTGTGCCAATGTATGTGAAGCACACAGAAGCTATGCTAGATGAGATTGATAGGATGGAGGAGGATGAAGAATCGGAAGATCCCATTATGGATATCGACACCAGCTGCGTGAAGGATCAACTCAGTGTTGTGGAGTACATAGATGACATCTATGCACACTACAGGAAAACTGAGAATCAAAGCTGTGTCTCCCCCCGTTACATGGCCCAGCAACCTGACATCAATGAGAAGATGAGGGCTATTCTTATTGACTGGCTTATTGAGGTCCACTACAAGTTTGAGCTTATGGAGGAGACGTTATTCCTCACCATCAACCTTATAGACAGATTCTTAGAGCGTCAAGTGGTGGTCAGGAAGAAGCTTCAGCTGGTTGGTGTAACAGCCATGTTACTAGCCTGCAAGTATGAGGAGGTTTCTGTCCCAATCGTGGAGGATTTTGTTCTGATATCAGATAAGGCATATACTAGGAAAGATGTCCTTGACATGGAGAAATCAATGGTCAACAAGTTACAATTCAACTTTTCTGTTCCTACCCCATATGTGTTCATGAGGAGATTCCTCAAAGCTGCTCAGTCTGACAAAAAGCTTGAGCTTCTGTCCTTCTTCCTCATTGAGCTATGCCTAGTGGAGCATGAAATGCTAAAGTTTCCACCATCTCTGCTAGCTGCTGCAGCAATTTACACTGCTCAGTGTAGTCTTTCAAGGTTCAAGCAGTGGAGCAAAACCAGCGAGTGGTATACCAATTACTCAGAAGATGAACTTCAAGAATGCTCAAGGTTGATGGTTACTTTCCATCAGAAGGCTGAAACTGGTAGGCTAACAGGAGTGCATAGGAAGTACAGTACTTGGAAATTTGGCTATGCTGCTAAAGCTGAACCAGCTGAGTTTCTCCTGAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

436

Amino Acids

49.98

Weight (kDa)

5.19

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	185 - 310	9e-50	Cyclin, N-terminal domain
Cyclin_C	PF02984	313 - 429	9.5e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005900)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26150 FvH4_2g26150 FvH4_2g26150
malus_domestica	MD00G1140300.v1.1 MD03G1292400.v1.1
prunus_persica	Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1
pyrus_communis	pycom03g23160 pycom11g27290
rosa_chinensis	RchiOBHm_Chr6g0294531
rosa_laevigata	RLG00000011862
rosa_multiflora	Rmu_sc0004268.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173250
rosa_rugosa	Rorug06G0245500 Rorug06G0245600 Rorug06G0245600 Rorug06G0245600 Rorug06G0245700 Rorug06G0245800 Rorug06G0245900
rosa_samantha	Rh6AG358100 Rh6BG364900 Rh6CG372000 Rh6DG358800
rosa_wichuraiana	Rw6G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1140
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	1145
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	482, 531
AcsI	RAATTY	2 cut(s)	43, 1259
AcuI	CTGAAG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	545, 1247, 1252
AfiI	CCNNNNNNNGG	6 cut(s)	207, 610, 835, 892, 1140, 1207
AgsI	TTSAA	5 cut(s)	136, 925, 1110, 1117, 1172
Alw26I	GTCTC	3 cut(s)	32, 601, 695
AlwI	GGATC	2 cut(s)	482, 531
AoxI	GGCC	3 cut(s)	35, 144, 612
ApeKI	GCWGC	7 cut(s)	218, 513, 974, 1073, 1076, 1079, 1271
ApoI	RAATTY	2 cut(s)	43, 1259
AspS9I	GGNCC	4 cut(s)	53, 229, 613, 673
AsuHPI	GGTGA	3 cut(s)	118, 179, 706
AsuNHI	GCTAGC	1 cut(s)	1069
AvaII	GGWCC	3 cut(s)	53, 229, 673
BaeGI	GKGCMC	1 cut(s)	99
BbvI	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
BccI	CCATC	5 cut(s)	457, 725, 1069, 1183, 1209
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	32, 601, 695
BfaI	CTAG	7 cut(s)	288, 348, 446, 800, 873, 1031, 1070
BfmI	CTRYAG	2 cut(s)	568, 1077
BisI	GCNGC	8 cut(s)	111, 219, 514, 975, 1074, 1077, 1080, 1272
BlsI	GCNGC	8 cut(s)	112, 220, 515, 976, 1075, 1078, 1081, 1273
BmcAI	AGTACT	1 cut(s)	1252
Bme18I	GGWCC	3 cut(s)	53, 229, 673
BmgT120I	GGNCC	4 cut(s)	53, 229, 613, 673
BmiI	GGNNCC	3 cut(s)	7, 73, 279
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	1073
BpuEI	CTTGAG	2 cut(s)	1016, 1165
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	9, 49
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 610, 835, 892, 1140, 1207
Bse1I	ACTGG	2 cut(s)	665, 1222
Bse3DI	GCAATG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	9, 49
BseGI	GGATG	3 cut(s)	400, 468, 478
BseLI	CCNNNNNNNGG	6 cut(s)	207, 610, 835, 892, 1140, 1207
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	7 cut(s)	243, 544, 570, 992, 1109, 1170, 1281
BseNI	ACTGG	2 cut(s)	665, 1222
BseRI	GAGGAG	4 cut(s)	482, 713, 830, 973
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
BseYI	CCCAGC	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	37, 146, 614
BslFI	GGGAC	3 cut(s)	204, 314, 812
BslI	CCNNNNNNNGG	6 cut(s)	207, 610, 835, 892, 1140, 1207
BsmAI	GTCTC	3 cut(s)	32, 601, 695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	3 cut(s)	204, 314, 812
BsmI	GAATGC	1 cut(s)	1181
BsnI	GGCC	3 cut(s)	37, 146, 614
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	307, 369, 487, 523
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	37, 146, 614
BspCNI	CTCAG	7 cut(s)	244, 543, 571, 991, 1108, 1169, 1282
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	7, 73, 279
BspMAI	CTGCAG	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	2 cut(s)	482, 531
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	665, 1222
BssECI	CCNNGG	2 cut(s)	9, 49
BssMI	GATC	4 cut(s)	307, 369, 487, 523
BssNAI	GTATAC	1 cut(s)	1146
BssT1I	CCWWGG	2 cut(s)	9, 49
Bst1107I	GTATAC	1 cut(s)	1146
Bst4CI	ACNGT	5 cut(s)	305, 340, 365, 389, 1250
BstAPI	GCANNNNNTGC	1 cut(s)	1045
BstC8I	GCNNGC	3 cut(s)	39, 805, 1071
BstDEI	CTNAG	9 cut(s)	116, 252, 530, 579, 739, 978, 1095, 1156, 1290
BstF5I	GGATG	3 cut(s)	400, 468, 478
BstKTI	GATC	4 cut(s)	310, 372, 490, 526
BstMAI	GTCTC	3 cut(s)	32, 601, 695
BstMBI	GATC	4 cut(s)	307, 369, 487, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	1045, 1079, 1134, 1277, 1286
BstSFI	CTRYAG	2 cut(s)	568, 1077
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BstZ17I	GTATAC	1 cut(s)	1146
BsuRI	GGCC	3 cut(s)	37, 146, 614
BtsCI	GGATG	3 cut(s)	400, 468, 478
BtsI	GCAGTG	2 cut(s)	1089, 1127
BtsIMutI	CAGTG	5 cut(s)	394, 538, 1089, 1103, 1127
Cac8I	GCNNGC	3 cut(s)	39, 805, 1071
CciI	TCATGA	1 cut(s)	954
Cfr13I	GGNCC	4 cut(s)	53, 229, 613, 673
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	3 cut(s)	544, 1246, 1251
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	5 cut(s)	610, 793, 892, 955, 1040
CviQI	GTAC	3 cut(s)	544, 1246, 1251
DdeI	CTNAG	9 cut(s)	116, 252, 530, 579, 739, 978, 1095, 1156, 1290
DpnI	GATC	4 cut(s)	309, 371, 489, 525
DpnII	GATC	4 cut(s)	307, 369, 487, 523
Eco130I	CCWWGG	2 cut(s)	9, 49
Eco147I	AGGCCT	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	2 cut(s)	502, 855
Eco47I	GGWCC	3 cut(s)	53, 229, 673
Eco57I	CTGAAG	1 cut(s)	755
EcoRV	GATATC	2 cut(s)	502, 855
EcoT14I	CCWWGG	2 cut(s)	9, 49
ErhI	CCWWGG	2 cut(s)	9, 49
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	5 cut(s)	613, 796, 895, 958, 1043
FalI	AAGNNNNNCTT	4 cut(s)	870, 902, 1152, 1184
FaqI	GGGAC	3 cut(s)	204, 314, 812
FatI	CATG	5 cut(s)	609, 792, 891, 954, 1039
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	8 cut(s)	111, 219, 514, 975, 1074, 1077, 1080, 1272
FokI	GGATG	3 cut(s)	407, 475, 485
Fsp4HI	GCNGC	8 cut(s)	111, 219, 514, 975, 1074, 1077, 1080, 1272
FspBI	CTAG	7 cut(s)	288, 348, 446, 800, 873, 1031, 1070
GluI	GCNGC	8 cut(s)	111, 219, 514, 975, 1074, 1077, 1080, 1272
GsaI	CCCAGC	1 cut(s)	619
HaeIII	GGCC	3 cut(s)	37, 146, 614
HgaI	GACGC	1 cut(s)	734
Hin1II	CATG	5 cut(s)	613, 796, 895, 958, 1043
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	2 cut(s)	767, 992
HinfI	GANTC	7 cut(s)	248, 401, 479, 583, 735, 963, 1303
HphI	GGTGA	3 cut(s)	118, 179, 706
Hpy166II	GTNNAC	4 cut(s)	361, 676, 910, 1146
Hpy188I	TCNGA	8 cut(s)	253, 406, 484, 852, 859, 985, 1159, 1206
Hpy188III	TCNNGA	5 cut(s)	311, 760, 955, 1172, 1300
Hpy8I	GTNNAC	4 cut(s)	361, 676, 910, 1146
HpyAV	CCTTC	5 cut(s)	79, 251, 514, 1018, 1201
HpyCH4III	ACNGT	5 cut(s)	305, 340, 365, 389, 1250
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	6 cut(s)	41, 221, 563, 807, 1079, 1237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1045, 1079, 1134, 1277, 1286
HpyF3I	CTNAG	9 cut(s)	116, 252, 530, 579, 739, 978, 1095, 1156, 1290
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	5 cut(s)	613, 796, 895, 958, 1043
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	307, 369, 487, 523
LmnI	GCTCC	2 cut(s)	1036, 1125
Lsp1109I	GCAGC	7 cut(s)	205, 500, 961, 1060, 1063, 1091, 1258
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	7 cut(s)	288, 348, 446, 800, 873, 1031, 1070
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	6 cut(s)	265, 605, 784, 795, 915, 1192
MalI	GATC	4 cut(s)	309, 371, 489, 525
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	4 cut(s)	307, 369, 487, 523
MboII	GAAGA	7 cut(s)	410, 488, 497, 649, 775, 1003, 1172
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	8 cut(s)	43, 130, 176, 315, 920, 1083, 1150, 1259
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	3 cut(s)	513, 775, 1289
Mva1269I	GAATGC	1 cut(s)	1181
MwoI	GCNNNNNNNGC	5 cut(s)	1045, 1079, 1134, 1277, 1286
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	4 cut(s)	307, 369, 487, 523
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	5 cut(s)	613, 796, 895, 958, 1043
NlaIV	GGNNCC	3 cut(s)	7, 73, 279
NmuCI	GTSAC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	954
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	1181
PfeI	GAWTC	7 cut(s)	248, 401, 479, 583, 735, 963, 1303
PflMI	CCANNNNNTGG	1 cut(s)	1140
PkrI	GCNGC	8 cut(s)	112, 220, 515, 976, 1075, 1078, 1081, 1273
PspFI	CCCAGC	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	7, 73, 279
PspPI	GGNCC	4 cut(s)	53, 229, 613, 673
PstI	CTGCAG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	3 cut(s)	513, 775, 1289
RsaI	GTAC	3 cut(s)	545, 1247, 1252
RsaNI	GTAC	3 cut(s)	544, 1246, 1251
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	8 cut(s)	111, 219, 514, 975, 1074, 1077, 1080, 1272
Sau3AI	GATC	4 cut(s)	307, 369, 487, 523
Sau96I	GGNCC	4 cut(s)	53, 229, 613, 673
ScaI	AGTACT	1 cut(s)	1252
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	2 cut(s)	568, 1077
SinI	GGWCC	3 cut(s)	53, 229, 673
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	2 cut(s)	995, 1180
SmoI	CTYRAG	2 cut(s)	995, 1180
Sse9I	AATT	8 cut(s)	43, 130, 176, 315, 920, 1083, 1150, 1259
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	7 cut(s)	288, 348, 446, 800, 873, 1031, 1070
StuI	AGGCCT	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	9, 49
TaaI	ACNGT	5 cut(s)	305, 340, 365, 389, 1250
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	2 cut(s)	106, 504
TasI	AATT	8 cut(s)	43, 130, 176, 315, 920, 1083, 1150, 1259
TatI	WGTACW	3 cut(s)	543, 1245, 1250
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	7 cut(s)	248, 401, 479, 583, 735, 963, 1303
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	5 cut(s)	394, 538, 1096, 1103, 1127
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	7 cut(s)	218, 513, 974, 1073, 1076, 1079, 1271
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	411, 489, 943, 1056, 1179
TspRI	CASTG	5 cut(s)	394, 538, 1096, 1103, 1127
Van91I	CCANNNNNTGG	1 cut(s)	1140
VpaK11BI	GGWCC	3 cut(s)	53, 229, 673
XapI	RAATTY	2 cut(s)	43, 1259
XmiI	GTMKAC	1 cut(s)	1145
XspI	CTAG	7 cut(s)	288, 348, 446, 800, 873, 1031, 1070
ZrmI	AGTACT	1 cut(s)	1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.