Rh6CG372000

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005900
Physical Location & Seq
Forward (+)
55835620 .. 55838798
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG372000.1

Sequence Viewer

Length: 1356 bp
ATGAAGAGGCTATTTGCGCTGGTTTTGGTTCTGGGATTTACTAGTGCATTACAGTACGATGGAGAATGTGAAAACAAGAAGGCATTGAATCCCAGGCCACACAGTGTGTCGCTTTTGGAGTTTGGGGCAGTCGGAGATGGGAAAACATTGAACACAGTAGCTTTCCAAAATGCCGTTTTCTATGTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTCTATGTTCCGCCTGGCCGGTGGCTCACTGGGAGCTTTAACCTCACCAGCCACCTCACGCTCTTCCTTGAGACTGGTGCAACTATTCTTGGATCCCAGGACTATACTCACTGGGAAATTGAGGAACCCCTTCCTTCTTATGGTCGCGGGATTGATTTTCCAGGTTGGAGATATCGTAGCTTGATCAACGGTGATGATCTACACGATGTGGTGATAACAGGTGGTAATGGAACCATAGATGGACAGGGTTCTGTGTGGTGGGAGCAATTCAGCTCTCATTCGTTGAATTACAGCAGACCACATCTTGTGGAATTCACCAGATGTGATAATATCGTTATATCGAATCTGACTTTCTTGAACTCCCCGGCTTGGAACATTCATCCTACATATTGCAGGTATGTGAAAGTCCAAAACTTAACTGTTCATGCTTCTCCTGCATCTCCATATACTAGCGGAATAGTCCCAGATTCTTCTGAGCATGTTTGCATTGAGAACTGCAACATTAGTATGGGTCATGATGCAATTGTTCTTAAGAGCGGTTGGGATGAGTATGGAATCGCCTATGGCAAACCGACCAAAAGTGTACACATCCGGGCCGTCAACCTTCAATCTTCTTTAGGCTCCGGCCTGGCATTTGGGAGTGAGATGTCTGGAGGCATTTTAAACGTACTAGTAGAGCGGCTTCATCTGTCTAACTCATTCGTTGGCATTGAACTAAAGACAACCAGAGGAAGAGGAGGATATATGAAAGACATTGTTATATCGAATGTAGAAATGCACAACATTCACACAGCAATTCAGGTCACTGGTCAGAGTGGCTCTCATCCTGATGATAAGTTTGACCCTGATCAAGTTCCATTTGTTAAAGGAATCACCTTTGACAACATGGTCGGCAGTAATATTACATTTGCTGGGAATTTTTCTGGAATCTACGAATCACCTTTCACATCTATTTGTCTCTCAAATGTGTCATTCTCCATGACTTGGGATTCTTCTAGCTCATGGTTCTGTTCCGATGTGAAGGGGTTTTCCCAGAAGGTTTCTCCAGAACCATGTTCAGACCTCAAGGAATCATCTTTTAATGCTTCCTCATCTTGCTTCTTTTCCTTATACCCTTACAATTATGCTACAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

451

Amino Acids

49.55

Weight (kDa)

5.64

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 132 - 413 1.5e-32 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1103
Acc36I ACCTGC 1 cut(s) 600
AccB7I CCANNNNNTGG 1 cut(s) 1200
AccBSI CCGCTC 2 cut(s) 753, 895
AccII CGCG 1 cut(s) 363
AciI CCGC 5 cut(s) 227, 363, 669, 753, 895
AclWI GGATC 2 cut(s) 303, 316
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 2 cut(s) 527, 1132
AdeI CACNNNGTG 3 cut(s) 104, 106, 424
AfaI GTAC 3 cut(s) 56, 801, 885
AfiI CCNNNNNNNGG 3 cut(s) 356, 585, 1200
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 6 cut(s) 88, 151, 502, 574, 824, 929
AhlI ACTAGT 2 cut(s) 41, 886
AjnI CCWGG 5 cut(s) 92, 229, 312, 376, 843
AluBI AGCT 6 cut(s) 161, 217, 252, 396, 489, 1215
AluI AGCT 6 cut(s) 161, 217, 252, 396, 489, 1215
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 2 cut(s) 281, 1178
AlwI GGATC 2 cut(s) 303, 316
AoxI GGCC 4 cut(s) 95, 232, 810, 841
ApoI RAATTY 2 cut(s) 527, 1132
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 810
AsuC2I CCSGG 2 cut(s) 581, 809
AsuHPI GGTGA 6 cut(s) 253, 419, 439, 523, 1081, 1146
BamHI GGATCC 1 cut(s) 308
BarI GAAGNNNNNNTAC 2 cut(s) 882, 914
Bbv12I GWGCWC 1 cut(s) 214
BccI CCATC 3 cut(s) 53, 131, 449
BceAI ACGGC 2 cut(s) 158, 797
BciT130I CCWGG 5 cut(s) 94, 231, 314, 378, 845
BclI TGATCA 2 cut(s) 399, 1063
BcnI CCSGG 2 cut(s) 581, 809
BcoDI GTCTC 2 cut(s) 281, 1178
BcuI ACTAGT 2 cut(s) 41, 886
BfaI CTAG 4 cut(s) 42, 666, 887, 1212
BfmI CTRYAG 1 cut(s) 1344
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 600
BisI GCNGC 1 cut(s) 896
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 897
Bme1390I CCNGG 7 cut(s) 94, 231, 314, 378, 581, 809, 845
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 4 cut(s) 310, 342, 448, 838
BmrFI CCNGG 7 cut(s) 94, 231, 314, 378, 581, 809, 845
BmrI ACTGGG 2 cut(s) 255, 337
BmsI GCATC 2 cut(s) 662, 724
BmuI ACTGGG 2 cut(s) 255, 337
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 2 cut(s) 888, 1245
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 305, 1265
BpuMI CCSGG 2 cut(s) 581, 809
BsaJI CCNNGG 3 cut(s) 92, 312, 579
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 585, 1200
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 4 cut(s) 250, 295, 332, 1027
BseBI CCWGG 5 cut(s) 94, 231, 314, 378, 845
BseDI CCNNGG 3 cut(s) 92, 312, 579
BseGI GGATG 4 cut(s) 595, 766, 804, 1039
BseLI CCNNNNNNNGG 3 cut(s) 356, 585, 1200
BseMII CTCAG 2 cut(s) 227, 681
BseNI ACTGG 4 cut(s) 250, 295, 332, 1027
BseRI GAGGAG 1 cut(s) 966
BseYI CCCAGC 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 4 cut(s) 97, 234, 812, 843
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 4 cut(s) 235, 581, 808, 840
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 3 cut(s) 356, 585, 1200
BsmAI GTCTC 2 cut(s) 281, 1178
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 4 cut(s) 97, 234, 812, 843
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 799
Bsp143I GATC 4 cut(s) 308, 399, 412, 1063
Bsp1720I GCTNAGC 1 cut(s) 213
BspACI CCGC 5 cut(s) 227, 363, 669, 753, 895
BspANI GGCC 4 cut(s) 97, 234, 812, 843
BspCNI CTCAG 2 cut(s) 226, 682
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 4 cut(s) 310, 342, 448, 838
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 2 cut(s) 303, 316
BspQI GCTCTTC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 2 cut(s) 753, 895
BsrFI RCCGGY 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 799
BsrI ACTGG 4 cut(s) 250, 295, 332, 1027
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 3 cut(s) 92, 312, 579
BssMI GATC 4 cut(s) 308, 399, 412, 1063
Bst2UI CCWGG 5 cut(s) 94, 231, 314, 378, 845
Bst4CI ACNGT 5 cut(s) 54, 104, 157, 407, 637
Bst6I CTCTTC 2 cut(s) 284, 943
BstAFI CTTAAG 1 cut(s) 746
BstAUI TGTACA 1 cut(s) 799
BstDEI CTNAG 2 cut(s) 213, 690
BstF5I GGATG 4 cut(s) 595, 766, 804, 1039
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 311, 402, 415, 1066
BstMAI GTCTC 2 cut(s) 281, 1178
BstMBI GATC 4 cut(s) 308, 399, 412, 1063
BstMWI GCNNNNNNNGC 2 cut(s) 16, 650
BstNI CCWGG 5 cut(s) 94, 231, 314, 378, 845
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 7 cut(s) 92, 229, 312, 376, 579, 807, 843
BstSFI CTRYAG 1 cut(s) 1344
BstUI CGCG 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 4 cut(s) 97, 234, 812, 843
BtsCI GGATG 4 cut(s) 595, 766, 804, 1039
BtsIMutI CAGTG 4 cut(s) 109, 243, 325, 1020
BveI ACCTGC 1 cut(s) 600
CciI TCATGA 1 cut(s) 730
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 810
Csp6I GTAC 3 cut(s) 55, 800, 884
CviAII CATG 7 cut(s) 641, 695, 731, 1102, 1195, 1218, 1269
CviQI GTAC 3 cut(s) 55, 800, 884
DdeI CTNAG 2 cut(s) 213, 690
DpnI GATC 4 cut(s) 310, 401, 414, 1065
DpnII GATC 4 cut(s) 308, 399, 412, 1063
DraI TTTAAA 1 cut(s) 879
DraIII CACNNNGTG 3 cut(s) 104, 106, 424
DrdI GACNNNNNNGTC 1 cut(s) 1103
DseDI GACNNNNNNGTC 1 cut(s) 1103
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 284, 943
EarI CTCTTC 2 cut(s) 284, 943
EciI GGCGGA 1 cut(s) 216
Eco32I GATATC 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 5 cut(s) 92, 229, 312, 376, 843
EcoRV GATATC 1 cut(s) 389
FaeI CATG 7 cut(s) 644, 698, 734, 1105, 1198, 1221, 1272
FaqI GGGAC 1 cut(s) 662
FatI CATG 7 cut(s) 640, 694, 730, 1101, 1194, 1217, 1268
FauI CCCGC 1 cut(s) 356
FbaI TGATCA 2 cut(s) 399, 1063
Fnu4HI GCNGC 1 cut(s) 896
FokI GGATG 4 cut(s) 582, 773, 791, 1026
Fsp4HI GCNGC 1 cut(s) 896
FspBI CTAG 4 cut(s) 42, 666, 887, 1212
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 896
GsaI CCCAGC 1 cut(s) 1131
GsuI CTGGAG 2 cut(s) 888, 1245
HaeIII GGCC 4 cut(s) 97, 234, 812, 843
HapII CCGG 4 cut(s) 235, 581, 808, 840
HhaI GCGC 1 cut(s) 19
Hin1II CATG 7 cut(s) 644, 698, 734, 1105, 1198, 1221, 1272
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 9 cut(s) 88, 559, 683, 771, 1086, 1143, 1151, 1205, 1286
HpaII CCGG 4 cut(s) 235, 581, 808, 840
HphI GGTGA 6 cut(s) 253, 419, 439, 523, 1081, 1146
Hpy166II GTNNAC 3 cut(s) 800, 802, 817
Hpy188I TCNGA 6 cut(s) 134, 564, 691, 1029, 1231, 1276
Hpy188III TCNNGA 6 cut(s) 571, 731, 867, 1043, 1140, 1262
Hpy8I GTNNAC 3 cut(s) 800, 802, 817
HpyAV CCTTC 6 cut(s) 73, 356, 360, 830, 1231, 1246
HpyCH4III ACNGT 5 cut(s) 54, 104, 157, 407, 637
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 8 cut(s) 47, 296, 609, 653, 702, 714, 737, 994
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 650
HpyF3I CTNAG 2 cut(s) 213, 690
HpySE526I ACGT 1 cut(s) 882
Hsp92II CATG 7 cut(s) 644, 698, 734, 1105, 1198, 1221, 1272
HspAI GCGC 1 cut(s) 17
Ksp22I TGATCA 2 cut(s) 399, 1063
Kzo9I GATC 4 cut(s) 308, 399, 412, 1063
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 3 cut(s) 249, 478, 842
LweI GCATC 2 cut(s) 662, 724
MaeI CTAG 4 cut(s) 42, 666, 887, 1212
MaeII ACGT 1 cut(s) 882
MaeIII GTNAC 1 cut(s) 1018
MalI GATC 4 cut(s) 310, 401, 414, 1065
MbiI CCGCTC 2 cut(s) 753, 895
MboI GATC 4 cut(s) 308, 399, 412, 1063
MboII GAAGA 6 cut(s) 16, 271, 678, 819, 960, 1200
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 8 cut(s) 333, 482, 502, 527, 738, 1011, 1132, 1336
MmeI TCCRAC 2 cut(s) 112, 362
MnlI CCTC 9 cut(s) 269, 281, 331, 863, 938, 944, 947, 1289, 1315
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 6 cut(s) 255, 632, 747, 878, 1080, 1296
MslI CAYNNNNRTG 2 cut(s) 722, 1044
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 4 cut(s) 235, 581, 808, 840
MspR9I CCNGG 7 cut(s) 94, 231, 314, 378, 581, 809, 845
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 5 cut(s) 94, 231, 314, 378, 845
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 16, 650
NciI CCSGG 2 cut(s) 581, 809
NdeII GATC 4 cut(s) 308, 399, 412, 1063
NlaIII CATG 7 cut(s) 644, 698, 734, 1105, 1198, 1221, 1272
NlaIV GGNNCC 4 cut(s) 310, 342, 448, 838
NmuCI GTSAC 1 cut(s) 1018
NspI RCATGY 1 cut(s) 698
PagI TCATGA 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 9 cut(s) 88, 559, 683, 771, 1086, 1143, 1151, 1205, 1286
PflMI CCANNNNNTGG 1 cut(s) 1200
PkrI GCNGC 1 cut(s) 897
Psp6I CCWGG 5 cut(s) 92, 229, 312, 376, 843
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 5 cut(s) 92, 229, 312, 376, 843
PspN4I GGNNCC 4 cut(s) 310, 342, 448, 838
PspPI GGNCC 1 cut(s) 810
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 3 cut(s) 56, 801, 885
RsaNI GTAC 3 cut(s) 55, 800, 884
RseI CAYNNNNRTG 2 cut(s) 722, 1044
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 6 cut(s) 255, 632, 747, 878, 1080, 1296
SatI GCNGC 1 cut(s) 896
Sau3AI GATC 4 cut(s) 308, 399, 412, 1063
Sau96I GGNCC 1 cut(s) 810
ScrFI CCNGG 7 cut(s) 94, 231, 314, 378, 581, 809, 845
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 2 cut(s) 662, 724
SfcI CTRYAG 1 cut(s) 1344
SmiMI CAYNNNNRTG 2 cut(s) 722, 1044
SmlI CTYRAG 3 cut(s) 284, 746, 1280
SmoI CTYRAG 3 cut(s) 284, 746, 1280
SpeI ACTAGT 2 cut(s) 41, 886
Sse9I AATT 8 cut(s) 333, 482, 502, 527, 738, 1011, 1132, 1336
SsiI CCGC 5 cut(s) 227, 363, 669, 753, 895
SspI AATATT 1 cut(s) 1117
SspMI CTAG 4 cut(s) 42, 666, 887, 1212
StyD4I CCNGG 7 cut(s) 92, 229, 312, 376, 579, 807, 843
TaaI ACNGT 5 cut(s) 54, 104, 157, 407, 637
TaiI ACGT 1 cut(s) 885
TaqI TCGA 2 cut(s) 557, 980
TasI AATT 8 cut(s) 333, 482, 502, 527, 738, 1011, 1132, 1336
TatI WGTACW 1 cut(s) 799
TauI GCSGC 1 cut(s) 898
TfiI GAWTC 9 cut(s) 88, 559, 683, 771, 1086, 1143, 1151, 1205, 1286
Tru1I TTAA 6 cut(s) 255, 632, 747, 878, 1080, 1296
Tru9I TTAA 6 cut(s) 255, 632, 747, 878, 1080, 1296
TscAI CASTG 4 cut(s) 109, 250, 332, 1027
TseFI GTSAC 1 cut(s) 1018
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 5 cut(s) 17, 584, 629, 890, 977
TspRI CASTG 4 cut(s) 109, 250, 332, 1027
Van91I CCANNNNNTGG 1 cut(s) 1200
Vha464I CTTAAG 1 cut(s) 746
XapI RAATTY 2 cut(s) 527, 1132
XceI RCATGY 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 4 cut(s) 42, 666, 887, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.