RLG00000011862

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005900
Physical Location & Seq
Reverse (-)
13389871 .. 13392388
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011862

Sequence Viewer

Length: 1413 bp
ATGAAGAGGCTAGTAAGTAGGCATCCAACTGTGGTTCAACCTTTTCTTGTTGTTTTTTCTTATTTTCAGTTGGCGCTGGTTTTGGTTCTGGGATTTACTAGTGCATTACAGTACGATGGAGAATGTGAAAACAAGAAGGCATTGAATCCCAGGCCACACAGTGTGTCGCTTTTGGAGTTTGGGGCAGTCGGAGATGGGAAAACATTGAACACAGTAGCTTTCCAAAATGCCGTTTTCTACGTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTCTATGTTCCGCCTGGCCGGTGGCTCACTGGGAGCTTTAACCTCACCAGCCACCTCACGCTCTTCCTTGAGACCGGTGCAACTATTCTTGGATCCCAGGACTACACTCACTGGGAAATTGAGGAACCCCTGCCTTCTTATGGTCGCGGGATTGATTTTCCAGGTTGGAGATATCGTAGCTTGATCAACGGTGATGATCTACACGATGTGGTGATAACAGGTGGTAATGGAACCATTGATGGACAGGGTTCTGTGTGGTGGGAGCAATTCAGCTCTCATTCGTTGAATTACAGCAGACCACATCTTGTGGAATTCGCCAGATGTGATAATATCGTTATATCGAATCTGACTTTCTTGAACTCCCCTGCTTGGAACATTCATCCTACATATTGCAGGTATGTGAAAGTCCAAAACTTAACTGTTCATGCTTCTCCTGCATCTCCATATACTAGCGGAATAGTCCCAGATTCTTCTGAGCATGTTTGCATTGAGAACTGCAACATTAGTATGGGTCATGACGCAATTGTTCTTAAGAGCGGTTGGGATGAGTATGGAATCGCCTATGGCAAACCGACCAAAAGTGTACACATCCGGGCAGTCAACCTTCAATCTTCTTTAGGCTCCGGCCTGGCATTTGGGAGTGAGATGTCTGGAGGCATTTTAAACATACTAGTAGAGCGACTTCATCTGTCTGACTCATTCGTTGGCATTGCACTCAAGACAACTAGAGGAAGAGGAGGATATATGAAAGACATTGCTATATCCAATGTAGAAATGCACAACATTCACACAGCAATTCAGGTCACTGGTCAGAGTGGCTCTCATCCTGATGATAAGTATGACCCTGATCAAGTTCCATTTGTTAAAGGAATCACCTTTGCCAACATGGTTGGCAGTAATATTACATTTGCTGGGAATTTTTCCGGAATCTACGAATCACCTTTCACATCTATTTGTCTCTCAAATGTGTCATTCTCCATGACTTGGGATTCTTCTAGCTCATGGTTCTGTTCCAATGTGAAGGGGTTTTCCCAGAAGGTTTCTCCAGAACCATGCTCAGACCTCAAGGAATCGTCTTTTAATGCTTCCTCATCTTGCTTCTTTTCCTTATACCCTTACAATTATGCTCCAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

471

Amino Acids

51.62

Weight (kDa)

5.95

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 151 - 432 7.5e-33 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 1257
AccBSI CCGCTC 1 cut(s) 810
AccII CGCG 1 cut(s) 420
AccIII TCCGGA 1 cut(s) 1196
AciI CCGC 4 cut(s) 284, 420, 726, 810
AclWI GGATC 2 cut(s) 360, 373
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 584, 1189
AdeI CACNNNGTG 3 cut(s) 161, 163, 481
AfaI GTAC 2 cut(s) 113, 858
AfiI CCNNNNNNNGG 3 cut(s) 413, 642, 1257
AflII CTTAAG 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 6 cut(s) 38, 145, 208, 559, 631, 881
AhlI ACTAGT 2 cut(s) 98, 943
AjnI CCWGG 5 cut(s) 149, 286, 369, 433, 900
AluBI AGCT 6 cut(s) 218, 274, 309, 453, 546, 1272
AluI AGCT 6 cut(s) 218, 274, 309, 453, 546, 1272
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 338, 1235
AlwI GGATC 2 cut(s) 360, 373
Aor13HI TCCGGA 1 cut(s) 1196
AoxI GGCC 3 cut(s) 152, 289, 898
ApoI RAATTY 2 cut(s) 584, 1189
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 5 cut(s) 310, 476, 496, 1138, 1203
BamHI GGATCC 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 3 cut(s) 110, 188, 506
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 5 cut(s) 151, 288, 371, 435, 902
BclI TGATCA 2 cut(s) 456, 1120
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 338, 1235
BcuI ACTAGT 2 cut(s) 98, 943
BfaI CTAG 6 cut(s) 11, 99, 723, 944, 999, 1269
BfoI RGCGCY 1 cut(s) 77
BfrI CTTAAG 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 657
BlpI GCTNAGC 1 cut(s) 270
Bme1390I CCNGG 6 cut(s) 151, 288, 371, 435, 866, 902
BmiI GGNNCC 4 cut(s) 367, 399, 505, 895
BmrFI CCNGG 6 cut(s) 151, 288, 371, 435, 866, 902
BmrI ACTGGG 2 cut(s) 312, 394
BmsI GCATC 2 cut(s) 31, 719
BmuI ACTGGG 2 cut(s) 312, 394
BplI GAGNNNNNCTC 2 cut(s) 1078, 1110
BpmI CTGGAG 3 cut(s) 945, 1302, 1386
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 3 cut(s) 362, 974, 1322
BpuMI CCSGG 1 cut(s) 866
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 149, 369
BsaWI WCCGGW 2 cut(s) 347, 1196
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 642, 1257
Bse118I RCCGGY 2 cut(s) 291, 347
Bse1I ACTGG 3 cut(s) 307, 389, 1084
Bse3DI GCAATG 2 cut(s) 981, 1026
BseAI TCCGGA 1 cut(s) 1196
BseBI CCWGG 5 cut(s) 151, 288, 371, 435, 902
BseDI CCNNGG 2 cut(s) 149, 369
BseGI GGATG 5 cut(s) 22, 652, 823, 861, 1096
BseLI CCNNNNNNNGG 3 cut(s) 413, 642, 1257
BseMI GCAATG 2 cut(s) 981, 1026
BseMII CTCAG 3 cut(s) 284, 738, 1344
BseNI ACTGG 3 cut(s) 307, 389, 1084
BseRI GAGGAG 1 cut(s) 1023
BseYI CCCAGC 1 cut(s) 1184
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 3 cut(s) 154, 291, 900
BshTI ACCGGT 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 5 cut(s) 292, 348, 865, 897, 1197
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 413, 642, 1257
BsmAI GTCTC 2 cut(s) 338, 1235
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 3 cut(s) 154, 291, 900
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 1196
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 4 cut(s) 365, 456, 469, 1120
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 4 cut(s) 284, 420, 726, 810
BspANI GGCC 3 cut(s) 154, 291, 900
BspCNI CTCAG 3 cut(s) 283, 739, 1343
BspEI TCCGGA 1 cut(s) 1196
BspFNI CGCG 1 cut(s) 420
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 4 cut(s) 367, 399, 505, 895
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 2 cut(s) 360, 373
BspQI GCTCTTC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 810
BsrDI GCAATG 2 cut(s) 981, 1026
BsrFI RCCGGY 2 cut(s) 291, 347
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 3 cut(s) 307, 389, 1084
BssAI RCCGGY 2 cut(s) 291, 347
BssECI CCNNGG 2 cut(s) 149, 369
BssMI GATC 4 cut(s) 365, 456, 469, 1120
Bst2UI CCWGG 5 cut(s) 151, 288, 371, 435, 902
Bst4CI ACNGT 6 cut(s) 31, 111, 161, 214, 464, 694
Bst6I CTCTTC 2 cut(s) 341, 1000
BstAFI CTTAAG 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 856
BstDEI CTNAG 3 cut(s) 270, 747, 1330
BstF5I GGATG 5 cut(s) 22, 652, 823, 861, 1096
BstFNI CGCG 1 cut(s) 420
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 4 cut(s) 368, 459, 472, 1123
BstMAI GTCTC 2 cut(s) 338, 1235
BstMBI GATC 4 cut(s) 365, 456, 469, 1120
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstNI CCWGG 5 cut(s) 151, 288, 371, 435, 902
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 6 cut(s) 149, 286, 369, 433, 864, 900
BstUI CGCG 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 3 cut(s) 154, 291, 900
BtsCI GGATG 5 cut(s) 22, 652, 823, 861, 1096
BtsIMutI CAGTG 4 cut(s) 166, 300, 382, 1077
BveI ACCTGC 1 cut(s) 657
CciI TCATGA 1 cut(s) 787
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 2 cut(s) 291, 347
CseI GACGC 1 cut(s) 800
Csp6I GTAC 2 cut(s) 112, 857
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 7 cut(s) 698, 752, 788, 1159, 1252, 1275, 1326
CviQI GTAC 2 cut(s) 112, 857
DdeI CTNAG 3 cut(s) 270, 747, 1330
DpnI GATC 4 cut(s) 367, 458, 471, 1122
DpnII GATC 4 cut(s) 365, 456, 469, 1120
DraI TTTAAA 1 cut(s) 936
DraIII CACNNNGTG 3 cut(s) 161, 163, 481
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 341, 1000
EarI CTCTTC 2 cut(s) 341, 1000
EciI GGCGGA 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 5 cut(s) 149, 286, 369, 433, 900
EcoRV GATATC 1 cut(s) 446
FaeI CATG 7 cut(s) 701, 755, 791, 1162, 1255, 1278, 1329
FaqI GGGAC 1 cut(s) 719
FatI CATG 7 cut(s) 697, 751, 787, 1158, 1251, 1274, 1325
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 2 cut(s) 456, 1120
FokI GGATG 5 cut(s) 9, 639, 830, 848, 1083
FspBI CTAG 6 cut(s) 11, 99, 723, 944, 999, 1269
GlaI GCGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 1188
GsuI CTGGAG 3 cut(s) 945, 1302, 1386
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 3 cut(s) 154, 291, 900
HapII CCGG 5 cut(s) 292, 348, 865, 897, 1197
HgaI GACGC 1 cut(s) 800
HhaI GCGC 1 cut(s) 76
Hin1II CATG 7 cut(s) 701, 755, 791, 1162, 1255, 1278, 1329
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HpaII CCGG 5 cut(s) 292, 348, 865, 897, 1197
HphI GGTGA 5 cut(s) 310, 476, 496, 1138, 1203
Hpy166II GTNNAC 3 cut(s) 857, 859, 874
Hpy188I TCNGA 6 cut(s) 191, 621, 748, 967, 1086, 1333
Hpy188III TCNNGA 8 cut(s) 628, 788, 924, 991, 1100, 1197, 1319, 1403
Hpy8I GTNNAC 3 cut(s) 857, 859, 874
HpyAV CCTTC 5 cut(s) 130, 417, 887, 1288, 1303
HpyCH4III ACNGT 6 cut(s) 31, 111, 161, 214, 464, 694
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 8 cut(s) 104, 353, 666, 710, 759, 771, 986, 1051
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 3 cut(s) 270, 747, 1330
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 7 cut(s) 701, 755, 791, 1162, 1255, 1278, 1329
HspAI GCGC 1 cut(s) 74
Kpn2I TCCGGA 1 cut(s) 1196
Ksp22I TGATCA 2 cut(s) 456, 1120
Kzo9I GATC 4 cut(s) 365, 456, 469, 1120
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 4 cut(s) 306, 535, 899, 1405
LweI GCATC 2 cut(s) 31, 719
MaeI CTAG 6 cut(s) 11, 99, 723, 944, 999, 1269
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 1075
MalI GATC 4 cut(s) 367, 458, 471, 1122
MbiI CCGCTC 1 cut(s) 810
MboI GATC 4 cut(s) 365, 456, 469, 1120
MboII GAAGA 6 cut(s) 16, 328, 735, 876, 1017, 1257
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 8 cut(s) 390, 539, 559, 584, 795, 1068, 1189, 1393
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 3 cut(s) 50, 169, 419
MnlI CCTC 9 cut(s) 326, 338, 388, 920, 995, 1001, 1004, 1346, 1372
MroI TCCGGA 1 cut(s) 1196
MseI TTAA 6 cut(s) 312, 689, 804, 935, 1137, 1353
MslI CAYNNNNRTG 2 cut(s) 779, 1101
MspCI CTTAAG 1 cut(s) 803
MspI CCGG 5 cut(s) 292, 348, 865, 897, 1197
MspR9I CCNGG 6 cut(s) 151, 288, 371, 435, 866, 902
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 5 cut(s) 151, 288, 371, 435, 902
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 707
NciI CCSGG 1 cut(s) 866
NdeII GATC 4 cut(s) 365, 456, 469, 1120
NlaIII CATG 7 cut(s) 701, 755, 791, 1162, 1255, 1278, 1329
NlaIV GGNNCC 4 cut(s) 367, 399, 505, 895
NmuCI GTSAC 1 cut(s) 1075
NspI RCATGY 1 cut(s) 755
PagI TCATGA 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 341
PfeI GAWTC 9 cut(s) 145, 616, 740, 828, 1143, 1200, 1208, 1262, 1343
PflMI CCANNNNNTGG 1 cut(s) 1257
PinAI ACCGGT 1 cut(s) 347
PleI GAGTC 1 cut(s) 962
PpsI GAGTC 1 cut(s) 962
Psp6I CCWGG 5 cut(s) 149, 286, 369, 433, 900
PspFI CCCAGC 1 cut(s) 1184
PspGI CCWGG 5 cut(s) 149, 286, 369, 433, 900
PspN4I GGNNCC 4 cut(s) 367, 399, 505, 895
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 2 cut(s) 113, 858
RsaNI GTAC 2 cut(s) 112, 857
RseI CAYNNNNRTG 2 cut(s) 779, 1101
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 6 cut(s) 312, 689, 804, 935, 1137, 1353
Sau3AI GATC 4 cut(s) 365, 456, 469, 1120
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 6 cut(s) 151, 288, 371, 435, 866, 902
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 2 cut(s) 31, 719
SmiMI CAYNNNNRTG 2 cut(s) 779, 1101
SmlI CTYRAG 4 cut(s) 341, 803, 989, 1337
SmoI CTYRAG 4 cut(s) 341, 803, 989, 1337
SpeI ACTAGT 2 cut(s) 98, 943
Sse9I AATT 8 cut(s) 390, 539, 559, 584, 795, 1068, 1189, 1393
SsiI CCGC 4 cut(s) 284, 420, 726, 810
SspI AATATT 1 cut(s) 1174
SspMI CTAG 6 cut(s) 11, 99, 723, 944, 999, 1269
StyD4I CCNGG 6 cut(s) 149, 286, 369, 433, 864, 900
TaaI ACNGT 6 cut(s) 31, 111, 161, 214, 464, 694
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 614
TasI AATT 8 cut(s) 390, 539, 559, 584, 795, 1068, 1189, 1393
TatI WGTACW 1 cut(s) 856
TfiI GAWTC 9 cut(s) 145, 616, 740, 828, 1143, 1200, 1208, 1262, 1343
Tru1I TTAA 6 cut(s) 312, 689, 804, 935, 1137, 1353
Tru9I TTAA 6 cut(s) 312, 689, 804, 935, 1137, 1353
TscAI CASTG 4 cut(s) 166, 307, 389, 1084
TseFI GTSAC 1 cut(s) 1075
Tsp45I GTSAC 1 cut(s) 1075
TspDTI ATGAA 5 cut(s) 17, 641, 686, 947, 1034
TspRI CASTG 4 cut(s) 166, 307, 389, 1084
Van91I CCANNNNNTGG 1 cut(s) 1257
Vha464I CTTAAG 1 cut(s) 803
XapI RAATTY 2 cut(s) 584, 1189
XceI RCATGY 1 cut(s) 755
XspI CTAG 6 cut(s) 11, 99, 723, 944, 999, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.