Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004268.1

Orthogroup ID

OG0005900

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3102

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1471 bp

agttttggagcctccttttgtcagagttgagctggtgtttgttgagaagggtggaaagactcatgaagaggctagtaggcatccaactgtggttcaaccttttcttgttgttttttcttattttcagttggcgctggttttggttctgggatttactagtgcattacaatacgatggagaatgtgaaaacaagaaggcattgaatcccaggccacacagtgtgtcgcttttggagtttggggcagtcggagatgggaaaacattgaacacagtagctttccaaaatgccgttttctatgtcaagtcatttgctgacaagggtggtgctcagctctatgttccgcctggccggtggctcactgggagctttaacctcaccagccacctcacgctcttccttgagaccggtgcaactattcttggatcccaggactatactcactgggaaattgaggaaccccttccttcttatggtcgcgggattgattttccaggttggagatatcgtagcttgatcaacggtgatgatctacacgatgtggtgataacaggtggtaatggaaccatagatggacagggtgctgtgtggtgggagcaattcagctctcattcgttgaattacagcagaccacatcttgtggaattcaccagatgtgataatatcgttatatcgaatctgactttcttgaactccccggcttggaacattcatcctacatattgcaggtatgtgaaagtccaaaacttaactgttcatgcttctcctgcatctccatatactagcggaatagtcccagattcttctgagcatgtttgcattgagaactgcaacattagtatgggtcatgatgcaattgttcttaagagcggttgggatgagtatggaatcgcctatggcaaaccgaccaaaagtgtacacatccgggccgtcaaccttcaatcttctttaggctgcggcctggcatttgggagtgagatgtctggaggcattttaaacgtactagtagagcggcttcatctgtctaactcattcgttggcattgaactcaagacaaccagaggaagaggaggatatatgaaagacattgttatatcgaatgtagaaatgcacaacattcacacagcaattcaggtcactggtcagagtggctctcatcctgatgataagtttgaccctgatcaagttccatttgttaaaggaatcacctttgacaacatggtcggcagtaatattacatttgctgggaatttttctggaatctacgaatcacctttcacatctatttgtctctcaaatgtgtcattctccatgactggggattcttctagctcatggttctgttccgatgtgaaggggttttcccagaaggtttctccagaaccatgttcagacctcaaggaatcatcttttaatgcttcctcatcttgcttcttttccttatacccttacaattatgctacagatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

489

Amino Acids

53.68

Weight (kDa)

5.54

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005900)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26150 FvH4_2g26150 FvH4_2g26150
malus_domestica	MD00G1140300.v1.1 MD03G1292400.v1.1
prunus_persica	Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1
pyrus_communis	pycom03g23160 pycom11g27290
rosa_chinensis	RchiOBHm_Chr6g0294531
rosa_laevigata	RLG00000011862
rosa_multiflora	Rmu_sc0004268.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173250
rosa_rugosa	Rorug06G0245500 Rorug06G0245600 Rorug06G0245600 Rorug06G0245600 Rorug06G0245700 Rorug06G0245800 Rorug06G0245900
rosa_samantha	Rh6AG358100 Rh6BG364900 Rh6CG372000 Rh6DG358800
rosa_wichuraiana	Rw6G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1218
Acc36I	ACCTGC	1 cut(s)	715
AccBSI	CCGCTC	2 cut(s)	868, 1010
AccII	CGCG	1 cut(s)	478
AciI	CCGC	6 cut(s)	342, 478, 784, 868, 955, 1010
AclWI	GGATC	2 cut(s)	418, 431
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	642, 1247
AdeI	CACNNNGTG	3 cut(s)	219, 221, 539
AfaI	GTAC	2 cut(s)	916, 1000
AfiI	CCNNNNNNNGG	3 cut(s)	471, 700, 1315
AflII	CTTAAG	1 cut(s)	861
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	7 cut(s)	96, 203, 266, 617, 689, 939, 1044
AhlI	ACTAGT	2 cut(s)	156, 1001
AjnI	CCWGG	5 cut(s)	207, 344, 427, 491, 958
AluBI	AGCT	7 cut(s)	32, 276, 332, 367, 511, 604, 1330
AluI	AGCT	7 cut(s)	32, 276, 332, 367, 511, 604, 1330
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	396, 1293
AlwI	GGATC	2 cut(s)	418, 431
AoxI	GGCC	4 cut(s)	210, 347, 925, 956
ApeKI	GCWGC	1 cut(s)	952
ApoI	RAATTY	2 cut(s)	642, 1247
AsiGI	ACCGGT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	925
AsuC2I	CCSGG	2 cut(s)	696, 924
AsuHPI	GGTGA	6 cut(s)	368, 534, 554, 638, 1196, 1261
BamHI	GGATCC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	997, 1029
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	939
BccI	CCATC	3 cut(s)	168, 246, 564
BceAI	ACGGC	2 cut(s)	273, 912
BciT130I	CCWGG	5 cut(s)	209, 346, 429, 493, 960
BclI	TGATCA	2 cut(s)	514, 1178
BcnI	CCSGG	2 cut(s)	696, 924
BcoDI	GTCTC	2 cut(s)	396, 1293
BcuI	ACTAGT	2 cut(s)	156, 1001
BfaI	CTAG	5 cut(s)	73, 157, 781, 1002, 1327
BfmI	CTRYAG	1 cut(s)	1459
BfoI	RGCGCY	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	861
BfuAI	ACCTGC	1 cut(s)	715
BisI	GCNGC	3 cut(s)	953, 956, 1011
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	3 cut(s)	954, 957, 1012
Bme1390I	CCNGG	7 cut(s)	209, 346, 429, 493, 696, 924, 960
BmgT120I	GGNCC	1 cut(s)	925
BmiI	GGNNCC	4 cut(s)	10, 425, 457, 563
BmrFI	CCNGG	7 cut(s)	209, 346, 429, 493, 696, 924, 960
BmrI	ACTGGG	3 cut(s)	370, 452, 1324
BmsI	GCATC	3 cut(s)	89, 777, 839
BmuI	ACTGGG	3 cut(s)	370, 452, 1324
BplI	GAGNNNNNCTC	2 cut(s)	1136, 1168
BpmI	CTGGAG	2 cut(s)	1003, 1360
Bpu1102I	GCTNAGC	1 cut(s)	328
BpuEI	CTTGAG	3 cut(s)	420, 1032, 1380
BpuMI	CCSGG	2 cut(s)	696, 924
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	207, 427, 694
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 700, 1315
Bse118I	RCCGGY	2 cut(s)	349, 405
Bse1I	ACTGG	4 cut(s)	365, 447, 1142, 1319
BseBI	CCWGG	5 cut(s)	209, 346, 429, 493, 960
BseDI	CCNNGG	3 cut(s)	207, 427, 694
BseGI	GGATG	5 cut(s)	80, 710, 881, 919, 1154
BseLI	CCNNNNNNNGG	3 cut(s)	471, 700, 1315
BseMII	CTCAG	2 cut(s)	342, 796
BseNI	ACTGG	4 cut(s)	365, 447, 1142, 1319
BseRI	GAGGAG	1 cut(s)	1081
BseXI	GCAGC	1 cut(s)	939
BseYI	CCCAGC	1 cut(s)	1242
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	4 cut(s)	212, 349, 927, 958
BshTI	ACCGGT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	4 cut(s)	350, 406, 696, 923
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	3 cut(s)	471, 700, 1315
BsmAI	GTCTC	2 cut(s)	396, 1293
BsmFI	GGGAC	1 cut(s)	777
BsnI	GGCC	4 cut(s)	212, 349, 927, 958
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	914
Bsp143I	GATC	4 cut(s)	423, 514, 527, 1178
Bsp1720I	GCTNAGC	1 cut(s)	328
BspACI	CCGC	6 cut(s)	342, 478, 784, 868, 955, 1010
BspANI	GGCC	4 cut(s)	212, 349, 927, 958
BspCNI	CTCAG	2 cut(s)	341, 797
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	2 cut(s)	62, 845
BspLI	GGNNCC	4 cut(s)	10, 425, 457, 563
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	2 cut(s)	418, 431
BspQI	GCTCTTC	1 cut(s)	399
BspTI	CTTAAG	1 cut(s)	861
BspTNI	GGTCTC	1 cut(s)	396
BsrBI	CCGCTC	2 cut(s)	868, 1010
BsrFI	RCCGGY	2 cut(s)	349, 405
BsrGI	TGTACA	1 cut(s)	914
BsrI	ACTGG	4 cut(s)	365, 447, 1142, 1319
BssAI	RCCGGY	2 cut(s)	349, 405
BssECI	CCNNGG	3 cut(s)	207, 427, 694
BssMI	GATC	4 cut(s)	423, 514, 527, 1178
Bst2UI	CCWGG	5 cut(s)	209, 346, 429, 493, 960
Bst4CI	ACNGT	5 cut(s)	89, 219, 272, 522, 752
Bst6I	CTCTTC	3 cut(s)	61, 399, 1058
BstAFI	CTTAAG	1 cut(s)	861
BstAUI	TGTACA	1 cut(s)	914
BstDEI	CTNAG	2 cut(s)	328, 805
BstF5I	GGATG	5 cut(s)	80, 710, 881, 919, 1154
BstFNI	CGCG	1 cut(s)	478
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	426, 517, 530, 1181
BstMAI	GTCTC	2 cut(s)	396, 1293
BstMBI	GATC	4 cut(s)	423, 514, 527, 1178
BstMWI	GCNNNNNNNGC	1 cut(s)	765
BstNI	CCWGG	5 cut(s)	209, 346, 429, 493, 960
BstNSI	RCATGY	1 cut(s)	813
BstSCI	CCNGG	7 cut(s)	207, 344, 427, 491, 694, 922, 958
BstSFI	CTRYAG	1 cut(s)	1459
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	939
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	4 cut(s)	212, 349, 927, 958
BtsCI	GGATG	5 cut(s)	80, 710, 881, 919, 1154
BtsIMutI	CAGTG	4 cut(s)	224, 358, 440, 1135
BveI	ACCTGC	1 cut(s)	715
CciI	TCATGA	2 cut(s)	62, 845
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	2 cut(s)	349, 405
Cfr13I	GGNCC	1 cut(s)	925
Csp6I	GTAC	2 cut(s)	915, 999
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	8 cut(s)	63, 756, 810, 846, 1217, 1310, 1333, 1384
CviQI	GTAC	2 cut(s)	915, 999
DdeI	CTNAG	2 cut(s)	328, 805
DpnI	GATC	4 cut(s)	425, 516, 529, 1180
DpnII	GATC	4 cut(s)	423, 514, 527, 1178
DraI	TTTAAA	1 cut(s)	994
DraIII	CACNNNGTG	3 cut(s)	219, 221, 539
DrdI	GACNNNNNNGTC	1 cut(s)	1218
DseDI	GACNNNNNNGTC	1 cut(s)	1218
EaeI	YGGCCR	1 cut(s)	347
Eam1104I	CTCTTC	3 cut(s)	61, 399, 1058
EarI	CTCTTC	3 cut(s)	61, 399, 1058
EciI	GGCGGA	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	504
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	5 cut(s)	207, 344, 427, 491, 958
EcoRV	GATATC	1 cut(s)	504
FaeI	CATG	8 cut(s)	66, 759, 813, 849, 1220, 1313, 1336, 1387
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	8 cut(s)	62, 755, 809, 845, 1216, 1309, 1332, 1383
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	2 cut(s)	514, 1178
Fnu4HI	GCNGC	3 cut(s)	953, 956, 1011
FokI	GGATG	5 cut(s)	67, 697, 888, 906, 1141
Fsp4HI	GCNGC	3 cut(s)	953, 956, 1011
FspBI	CTAG	5 cut(s)	73, 157, 781, 1002, 1327
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	3 cut(s)	953, 956, 1011
GsaI	CCCAGC	1 cut(s)	1246
GsuI	CTGGAG	2 cut(s)	1003, 1360
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	212, 349, 927, 958
HapII	CCGG	4 cut(s)	350, 406, 696, 923
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	8 cut(s)	66, 759, 813, 849, 1220, 1313, 1336, 1387
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	932
HindII	GTYRAC	1 cut(s)	932
HpaII	CCGG	4 cut(s)	350, 406, 696, 923
HphI	GGTGA	6 cut(s)	368, 534, 554, 638, 1196, 1261
Hpy166II	GTNNAC	3 cut(s)	915, 917, 932
Hpy188I	TCNGA	7 cut(s)	24, 249, 679, 806, 1144, 1346, 1391
Hpy188III	TCNNGA	8 cut(s)	63, 686, 846, 982, 1049, 1158, 1255, 1377
Hpy8I	GTNNAC	3 cut(s)	915, 917, 932
HpyAV	CCTTC	7 cut(s)	41, 188, 471, 475, 945, 1346, 1361
HpyCH4III	ACNGT	5 cut(s)	89, 219, 272, 522, 752
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	8 cut(s)	162, 411, 724, 768, 817, 829, 852, 1109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	765
HpyF3I	CTNAG	2 cut(s)	328, 805
HpySE526I	ACGT	1 cut(s)	997
Hsp92II	CATG	8 cut(s)	66, 759, 813, 849, 1220, 1313, 1336, 1387
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	2 cut(s)	514, 1178
Kzo9I	GATC	4 cut(s)	423, 514, 527, 1178
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	8, 364, 593
Lsp1109I	GCAGC	1 cut(s)	939
LweI	GCATC	3 cut(s)	89, 777, 839
MaeI	CTAG	5 cut(s)	73, 157, 781, 1002, 1327
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	1 cut(s)	1133
MalI	GATC	4 cut(s)	425, 516, 529, 1180
MbiI	CCGCTC	2 cut(s)	868, 1010
MboI	GATC	4 cut(s)	423, 514, 527, 1178
MboII	GAAGA	6 cut(s)	78, 386, 793, 934, 1075, 1315
MfeI	CAATTG	1 cut(s)	853
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	8 cut(s)	448, 597, 617, 642, 853, 1126, 1247, 1451
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	108, 227, 477
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	6 cut(s)	370, 747, 862, 993, 1195, 1411
MslI	CAYNNNNRTG	2 cut(s)	837, 1159
MspCI	CTTAAG	1 cut(s)	861
MspI	CCGG	4 cut(s)	350, 406, 696, 923
MspR9I	CCNGG	7 cut(s)	209, 346, 429, 493, 696, 924, 960
MunI	CAATTG	1 cut(s)	853
MvaI	CCWGG	5 cut(s)	209, 346, 429, 493, 960
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	765
NciI	CCSGG	2 cut(s)	696, 924
NdeII	GATC	4 cut(s)	423, 514, 527, 1178
NlaIII	CATG	8 cut(s)	66, 759, 813, 849, 1220, 1313, 1336, 1387
NlaIV	GGNNCC	4 cut(s)	10, 425, 457, 563
NmuCI	GTSAC	1 cut(s)	1133
NspI	RCATGY	1 cut(s)	813
PagI	TCATGA	2 cut(s)	62, 845
PciSI	GCTCTTC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	9 cut(s)	203, 674, 798, 886, 1201, 1258, 1266, 1320, 1401
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	3 cut(s)	954, 957, 1012
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	5 cut(s)	207, 344, 427, 491, 958
PspFI	CCCAGC	1 cut(s)	1242
PspGI	CCWGG	5 cut(s)	207, 344, 427, 491, 958
PspN4I	GGNNCC	4 cut(s)	10, 425, 457, 563
PspPI	GGNCC	1 cut(s)	925
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	2 cut(s)	916, 1000
RsaNI	GTAC	2 cut(s)	915, 999
RseI	CAYNNNNRTG	2 cut(s)	837, 1159
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	6 cut(s)	370, 747, 862, 993, 1195, 1411
SatI	GCNGC	3 cut(s)	953, 956, 1011
Sau3AI	GATC	4 cut(s)	423, 514, 527, 1178
Sau96I	GGNCC	1 cut(s)	925
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	7 cut(s)	209, 346, 429, 493, 696, 924, 960
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	3 cut(s)	89, 777, 839
SfcI	CTRYAG	1 cut(s)	1459
SmiMI	CAYNNNNRTG	2 cut(s)	837, 1159
SmlI	CTYRAG	4 cut(s)	399, 861, 1047, 1395
SmoI	CTYRAG	4 cut(s)	399, 861, 1047, 1395
SpeI	ACTAGT	2 cut(s)	156, 1001
Sse9I	AATT	8 cut(s)	448, 597, 617, 642, 853, 1126, 1247, 1451
SsiI	CCGC	6 cut(s)	342, 478, 784, 868, 955, 1010
SspI	AATATT	1 cut(s)	1232
SspMI	CTAG	5 cut(s)	73, 157, 781, 1002, 1327
StyD4I	CCNGG	7 cut(s)	207, 344, 427, 491, 694, 922, 958
TaaI	ACNGT	5 cut(s)	89, 219, 272, 522, 752
TaiI	ACGT	1 cut(s)	1000
TaqI	TCGA	2 cut(s)	672, 1095
TasI	AATT	8 cut(s)	448, 597, 617, 642, 853, 1126, 1247, 1451
TatI	WGTACW	1 cut(s)	914
TauI	GCSGC	2 cut(s)	958, 1013
TfiI	GAWTC	9 cut(s)	203, 674, 798, 886, 1201, 1258, 1266, 1320, 1401
Tru1I	TTAA	6 cut(s)	370, 747, 862, 993, 1195, 1411
Tru9I	TTAA	6 cut(s)	370, 747, 862, 993, 1195, 1411
TscAI	CASTG	4 cut(s)	224, 365, 447, 1142
TseFI	GTSAC	1 cut(s)	1133
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	1 cut(s)	1133
TspDTI	ATGAA	5 cut(s)	79, 699, 744, 1005, 1092
TspRI	CASTG	4 cut(s)	224, 365, 447, 1142
Vha464I	CTTAAG	1 cut(s)	861
XapI	RAATTY	2 cut(s)	642, 1247
XceI	RCATGY	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	5 cut(s)	73, 157, 781, 1002, 1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.