Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005900

Physical Location & Seq

Genomic Coordinates Forward (+)

22225237 .. 22229358

Gene Structure 4122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAAGAGGCTATTGGCTCTGGTTCTGTTTCTGGCATTTAGTAGTGCTGTTCAGTATGATGGAGAAGGAAAGAATGGACAATGTGAAAACATGAAGTCTTTGGATCCCAGACCTCACAGCGTGTCACTCTTGGAGTTTGGGGCAGTTGGAGATGGGAAAACATTGAACACGGTAGCCTTTCAAAATGCTATTTTCTATGTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTCTATGTTCCGCCTGGCAGCTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACACTCTTCCTGGAAGCAGGTGCCATCATTCTTGGATCCCAGGATTACGCTCACTGGGATATTGTGAAACCTCTACCTTCTTATGGTCGAGGGATTGACTTGCCTGGTTGGAGATATCGTAGCTTGATCAACGGACACAATTTAAGTGATGTGGTGATAACAGGTGATAATGGAACCATTGATGGACAAGGTTCTGTCTGGTGGGAGCAATTTAGCTCTCATGCCTTGAATTACAGCCGACCACATCTAGTGGAATTCACCGGGTGTGATAATGTAACTATATCAAATTTAACCCTCTTGAACTCCCCCGCTTGGAACATTCATCCGGCGTACTGCAGGTATGTGCAAGTTCTGAACATAACTGTCCATGCTTCTCCTGCATCTCCATATACTAGTGGTATAGTCCCAGATTCTTCGGAGAATGTTTGCATTGAGAACTGCAACATTAGTATGAGTCATGATGCAATTGTTCTTAAGAGCGGTTGGGATGAGTATGGAATTGCCTACGGCAAACCCACTAAAAATGTGCATATCCGGGGTGTTAACCTTCAATCCTCTTTAGGCGCTGGCCTGGCATTTGGCAGTGAGATGTCTGGAGGCATATCGAACATACTTGTAGAGCAGCTTCATCTACGTAACTCATTCATTGGCATTGCACTCAAGACAACTAGGGGAAGAGGAGGTTATATGAAGGACATAATTATATCCAACGTTGAAATGGAAAATATTCACTTGGCAATGGAGGCTACAGGTCAGAGTGGCTCACACCCTGATGAAAATTTTGATCCTGATGAACTGCCATTTGTTAAAGGAGTCACCTTTGAGAATATGGTCGGCACTAATATCACTTTTGCTGGGAATTTTTCTGGACTTGACAAATCGCCTTTCACATCTATCTGTCTCTCAAATATCTCATTCTCCATCACTTGGAATTCTTCTACCTCATGGTTCTGTTCCAATGTGATGGGTTTTTCAAAGGAGGTGTCTCCTAAACCATGTTCAAACCTCCAGGACTCAACTTTTAACTCTTCCGCGGCTTGCTTCTTTTCCTTATACCCAGTCAACTATGCTACAGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

457

Amino Acids

49.55

Weight (kDa)

5.59

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005900)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26150 FvH4_2g26150 FvH4_2g26150
malus_domestica	MD00G1140300.v1.1 MD03G1292400.v1.1
prunus_persica	Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1 Prupe.8G265400_v2.0.a1
pyrus_communis	pycom03g23160 pycom11g27290
rosa_chinensis	RchiOBHm_Chr6g0294531
rosa_laevigata	RLG00000011862
rosa_multiflora	Rmu_sc0004268.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173250
rosa_rugosa	Rorug06G0245500 Rorug06G0245600 Rorug06G0245600 Rorug06G0245600 Rorug06G0245700 Rorug06G0245800 Rorug06G0245900
rosa_samantha	Rh6AG358100 Rh6BG364900 Rh6CG372000 Rh6DG358800
rosa_wichuraiana	Rw6G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	2 cut(s)	296, 615
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	1215
AccBSI	CCGCTC	1 cut(s)	768
AccII	CGCG	1 cut(s)	1322
AciI	CCGC	5 cut(s)	242, 597, 768, 1320, 1322
AclI	AACGTT	1 cut(s)	999
AclWI	GGATC	5 cut(s)	98, 111, 318, 331, 1067
AcsI	RAATTY	5 cut(s)	542, 574, 1066, 1147, 1219
AdeI	CACNNNGTG	2 cut(s)	121, 552
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	3 cut(s)	371, 600, 1215
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	8 cut(s)	166, 182, 517, 589, 839, 1004, 1263, 1290
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	6 cut(s)	244, 297, 327, 391, 858, 1296
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	232, 252, 411, 504, 913
AluI	AGCT	5 cut(s)	232, 252, 411, 504, 913
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	1193, 1278
AlwI	GGATC	5 cut(s)	98, 111, 318, 331, 1067
AoxI	GGCC	1 cut(s)	856
ApeKI	GCWGC	2 cut(s)	249, 910
ApoI	RAATTY	5 cut(s)	542, 574, 1066, 1147, 1219
ArsI	GACNNNNNNTTYG	2 cut(s)	1256, 1288
Asp700I	GAANNNNTTC	1 cut(s)	1014
AspLEI	GCGC	1 cut(s)	854
AsuC2I	CCSGG	2 cut(s)	550, 824
AsuHPI	GGTGA	4 cut(s)	454, 464, 538, 1096
BamHI	GGATCC	2 cut(s)	103, 323
BanI	GGYRCC	1 cut(s)	308
BarI	GAAGNNNNNNTAC	2 cut(s)	897, 929
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	261, 922
BccI	CCATC	6 cut(s)	53, 146, 320, 464, 1217, 1246
BceAI	ACGGC	1 cut(s)	811
BciT130I	CCWGG	6 cut(s)	246, 299, 329, 393, 860, 1298
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	2 cut(s)	550, 824
BcoDI	GTCTC	2 cut(s)	1193, 1278
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	3 cut(s)	536, 681, 957
BfmI	CTRYAG	3 cut(s)	622, 1035, 1359
BfoI	RGCGCY	1 cut(s)	855
BfrI	CTTAAG	1 cut(s)	761
BfuAI	ACCTGC	2 cut(s)	296, 615
BisI	GCNGC	3 cut(s)	250, 911, 1323
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	3 cut(s)	251, 912, 1324
Bme1390I	CCNGG	8 cut(s)	246, 299, 329, 393, 550, 824, 860, 1298
BmiI	GGNNCC	4 cut(s)	105, 310, 325, 463
BmrFI	CCNGG	8 cut(s)	246, 299, 329, 393, 550, 824, 860, 1298
BmrI	ACTGGG	2 cut(s)	352, 1340
BmsI	GCATC	2 cut(s)	677, 739
BmuI	ACTGGG	2 cut(s)	352, 1340
BpmI	CTGGAG	2 cut(s)	903, 1280
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	2 cut(s)	550, 824
BsaAI	YACGTR	1 cut(s)	923
BsaJI	CCNNGG	3 cut(s)	327, 823, 1320
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 600, 1215
Bse1I	ACTGG	3 cut(s)	265, 347, 1346
Bse3DI	GCAATG	2 cut(s)	939, 1032
BseBI	CCWGG	6 cut(s)	246, 299, 329, 393, 860, 1298
BseDI	CCNNGG	3 cut(s)	327, 823, 1320
BseGI	GGATG	2 cut(s)	610, 781
BseLI	CCNNNNNNNGG	3 cut(s)	371, 600, 1215
BseMI	GCAATG	2 cut(s)	939, 1032
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	3 cut(s)	265, 347, 1346
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	2 cut(s)	261, 922
BseYI	CCCAGC	1 cut(s)	1142
Bsh1236I	CGCG	1 cut(s)	1322
BshFI	GGCC	1 cut(s)	858
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	549, 614, 823
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	3 cut(s)	371, 600, 1215
BsmAI	GTCTC	2 cut(s)	1193, 1278
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	858
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	103, 323, 414, 1072
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	5 cut(s)	242, 597, 768, 1320, 1322
BspANI	GGCC	1 cut(s)	858
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	1322
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	4 cut(s)	105, 310, 325, 463
BspMAI	CTGCAG	1 cut(s)	626
BspMI	ACCTGC	2 cut(s)	296, 615
BspPI	GGATC	5 cut(s)	98, 111, 318, 331, 1067
BspT107I	GGYRCC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	761
BsrBI	CCGCTC	1 cut(s)	768
BsrDI	GCAATG	2 cut(s)	939, 1032
BsrI	ACTGG	3 cut(s)	265, 347, 1346
BssECI	CCNNGG	3 cut(s)	327, 823, 1320
BssMI	GATC	4 cut(s)	103, 323, 414, 1072
Bst2UI	CCWGG	6 cut(s)	246, 299, 329, 393, 860, 1298
Bst4CI	ACNGT	3 cut(s)	172, 652, 1363
Bst6I	CTCTTC	3 cut(s)	299, 958, 1321
BstAFI	CTTAAG	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	254, 856, 1327
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	1320
BstF5I	GGATG	2 cut(s)	610, 781
BstFNI	CGCG	1 cut(s)	1322
BstH2I	RGCGCY	1 cut(s)	855
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	4 cut(s)	106, 326, 417, 1075
BstMAI	GTCTC	2 cut(s)	1193, 1278
BstMBI	GATC	4 cut(s)	103, 323, 414, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	665, 860, 1031
BstNI	CCWGG	6 cut(s)	246, 299, 329, 393, 860, 1298
BstSCI	CCNGG	8 cut(s)	244, 297, 327, 391, 548, 822, 858, 1296
BstSFI	CTRYAG	3 cut(s)	622, 1035, 1359
BstSNI	TACGTA	1 cut(s)	923
BstUI	CGCG	1 cut(s)	1322
BstV1I	GCAGC	2 cut(s)	261, 922
BstX2I	RGATCY	2 cut(s)	103, 323
BstXI	CCANNNNNNTGG	1 cut(s)	1252
BstYI	RGATCY	2 cut(s)	103, 323
BsuRI	GGCC	1 cut(s)	858
BtgI	CCRYGG	1 cut(s)	1320
BtsCI	GGATG	2 cut(s)	610, 781
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	2 cut(s)	340, 877
BveI	ACCTGC	2 cut(s)	296, 615
Cac8I	GCNNGC	3 cut(s)	254, 856, 1327
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	1 cut(s)	854
Cfr42I	CCGCGG	1 cut(s)	1323
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	6 cut(s)	91, 509, 656, 746, 1233, 1284
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	105, 325, 416, 1074
DpnII	GATC	4 cut(s)	103, 323, 414, 1072
DraIII	CACNNNGTG	2 cut(s)	121, 552
Eam1104I	CTCTTC	3 cut(s)	299, 958, 1321
EarI	CTCTTC	3 cut(s)	299, 958, 1321
EciI	GGCGGA	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	923
Eco32I	GATATC	1 cut(s)	404
EcoRI	GAATTC	2 cut(s)	542, 1219
EcoRII	CCWGG	6 cut(s)	244, 297, 327, 391, 858, 1296
EcoRV	GATATC	1 cut(s)	404
FaeI	CATG	6 cut(s)	94, 512, 659, 749, 1236, 1287
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	6 cut(s)	90, 508, 655, 745, 1232, 1283
FauI	CCCGC	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	250, 911, 1323
FokI	GGATG	2 cut(s)	597, 788
Fsp4HI	GCNGC	3 cut(s)	250, 911, 1323
FspBI	CTAG	3 cut(s)	536, 681, 957
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	3 cut(s)	250, 911, 1323
GsaI	CCCAGC	1 cut(s)	1146
GsuI	CTGGAG	2 cut(s)	903, 1280
HaeII	RGCGCY	1 cut(s)	855
HaeIII	GGCC	1 cut(s)	858
HapII	CCGG	3 cut(s)	549, 614, 823
HhaI	GCGC	1 cut(s)	854
Hin1II	CATG	6 cut(s)	94, 512, 659, 749, 1236, 1287
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HincII	GTYRAC	2 cut(s)	832, 1351
HindII	GTYRAC	2 cut(s)	832, 1351
HinfI	GANTC	4 cut(s)	698, 742, 1101, 1301
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	3 cut(s)	549, 614, 823
HphI	GGTGA	4 cut(s)	454, 464, 538, 1096
Hpy166II	GTNNAC	2 cut(s)	832, 1351
Hpy188I	TCNGA	3 cut(s)	642, 706, 1044
Hpy188III	TCNNGA	6 cut(s)	586, 746, 882, 949, 1076, 1155
Hpy8I	GTNNAC	2 cut(s)	832, 1351
HpyAV	CCTTC	4 cut(s)	59, 375, 845, 973
HpyCH4III	ACNGT	3 cut(s)	172, 652, 1363
HpyCH4IV	ACGT	2 cut(s)	922, 999
HpyCH4V	TGCA	8 cut(s)	624, 634, 668, 717, 729, 752, 817, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	665, 860, 1031
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	922, 999
Hsp92II	CATG	6 cut(s)	94, 512, 659, 749, 1236, 1287
HspAI	GCGC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	832
KspI	CCGCGG	1 cut(s)	1323
Kzo9I	GATC	4 cut(s)	103, 323, 414, 1072
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	261, 922
LweI	GCATC	2 cut(s)	677, 739
MaeI	CTAG	3 cut(s)	536, 681, 957
MaeII	ACGT	2 cut(s)	922, 999
MaeIII	GTNAC	4 cut(s)	123, 562, 923, 1102
MalI	GATC	4 cut(s)	105, 325, 416, 1074
MbiI	CCGCTC	1 cut(s)	768
MboI	GATC	4 cut(s)	103, 323, 414, 1072
MboII	GAAGA	6 cut(s)	16, 286, 693, 975, 1215, 1308
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	2 cut(s)	103, 323
MhlI	GDGCHC	1 cut(s)	229
MlyI	GAGTC	3 cut(s)	751, 1110, 1295
MmeI	TCCRAC	3 cut(s)	127, 377, 1020
MroXI	GAANNNNTTC	1 cut(s)	1014
MseI	TTAA	7 cut(s)	270, 431, 578, 762, 831, 1095, 1311
MslI	CAYNNNNRTG	2 cut(s)	737, 1059
MspA1I	CMGCKG	2 cut(s)	252, 1322
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	3 cut(s)	549, 614, 823
MspR9I	CCNGG	8 cut(s)	246, 299, 329, 393, 550, 824, 860, 1298
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	6 cut(s)	246, 299, 329, 393, 860, 1298
MvnI	CGCG	1 cut(s)	1322
MwoI	GCNNNNNNNGC	3 cut(s)	665, 860, 1031
NciI	CCSGG	2 cut(s)	550, 824
NdeII	GATC	4 cut(s)	103, 323, 414, 1072
NlaIII	CATG	6 cut(s)	94, 512, 659, 749, 1236, 1287
NlaIV	GGNNCC	4 cut(s)	105, 310, 325, 463
NmuCI	GTSAC	2 cut(s)	123, 1102
PagI	TCATGA	1 cut(s)	745
PaqCI	CACCTGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	1014
PfeI	GAWTC	1 cut(s)	698
PflMI	CCANNNNNTGG	1 cut(s)	1215
PfoI	TCCNGGA	2 cut(s)	297, 1296
PkrI	GCNGC	3 cut(s)	251, 912, 1324
PleI	GAGTC	3 cut(s)	750, 1109, 1295
PpsI	GAGTC	3 cut(s)	750, 1109, 1295
Ppu21I	YACGTR	1 cut(s)	923
Psp1406I	AACGTT	1 cut(s)	999
Psp6I	CCWGG	6 cut(s)	244, 297, 327, 391, 858, 1296
PspFI	CCCAGC	1 cut(s)	1142
PspGI	CCWGG	6 cut(s)	244, 297, 327, 391, 858, 1296
PspN4I	GGNNCC	4 cut(s)	105, 310, 325, 463
PstI	CTGCAG	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	103, 323
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	2 cut(s)	737, 1059
SacII	CCGCGG	1 cut(s)	1323
SaqAI	TTAA	7 cut(s)	270, 431, 578, 762, 831, 1095, 1311
SatI	GCNGC	3 cut(s)	250, 911, 1323
Sau3AI	GATC	4 cut(s)	103, 323, 414, 1072
SchI	GAGTC	3 cut(s)	751, 1110, 1295
ScrFI	CCNGG	8 cut(s)	246, 299, 329, 393, 550, 824, 860, 1298
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	677, 739
SfcI	CTRYAG	3 cut(s)	622, 1035, 1359
Sfr303I	CCGCGG	1 cut(s)	1323
SgrBI	CCGCGG	1 cut(s)	1323
SmiMI	CAYNNNNRTG	2 cut(s)	737, 1059
SmlI	CTYRAG	2 cut(s)	761, 947
SmoI	CTYRAG	2 cut(s)	761, 947
SnaBI	TACGTA	1 cut(s)	923
SpeI	ACTAGT	1 cut(s)	680
SsiI	CCGC	5 cut(s)	242, 597, 768, 1320, 1322
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	3 cut(s)	536, 681, 957
StyD4I	CCNGG	8 cut(s)	244, 297, 327, 391, 548, 822, 858, 1296
TaaI	ACNGT	3 cut(s)	172, 652, 1363
TaiI	ACGT	2 cut(s)	925, 1002
TaqI	TCGA	2 cut(s)	376, 893
TauI	GCSGC	1 cut(s)	1325
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	7 cut(s)	270, 431, 578, 762, 831, 1095, 1311
Tru9I	TTAA	7 cut(s)	270, 431, 578, 762, 831, 1095, 1311
TscAI	CASTG	2 cut(s)	347, 877
TseFI	GTSAC	2 cut(s)	123, 1102
TseI	GCWGC	2 cut(s)	249, 910
Tsp45I	GTSAC	2 cut(s)	123, 1102
TspDTI	ATGAA	8 cut(s)	17, 107, 599, 905, 922, 992, 1077, 1095
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	347, 877
Van91I	CCANNNNNTGG	1 cut(s)	1215
Vha464I	CTTAAG	1 cut(s)	761
XapI	RAATTY	5 cut(s)	542, 574, 1066, 1147, 1219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1003
XmnI	GAANNNNTTC	1 cut(s)	1014
XspI	CTAG	3 cut(s)	536, 681, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.