pycom11g27290

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
29601803 .. 29604075
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g27290.4

Sequence Viewer

Length: 1359 bp
ATGAAGAGCCTATTGGCTCTGCTTTTGATTCTGGCATTTACTAGTGCTGCTCAGTATGATGGGAAGGACGGAGAATGCGAAAGGAAGAAGCTTTTCGATCCAAGACCTCACAGTGTGTCACTCTTGGAGTTTGGAGCAGTTGGAGACGGGAAAACATTGAACACGGTCGCGTTCCAAAATGCTATTTTCTATGTCAAGTCATTTGCTGACAAGGGCGGTGCTCAGCTCTATGTTCCGCCCGGAAAGTGGCTTACCGGAAGTTTTAACCTCACCAGCCACCTCACGCTCTTCCTGGAATCTGGCGCCATCATTCTTGGATCCCAGGATTACACTCACTGGGAAACTGTGGAACCCCTGCCTTCTTATGGTCGAGGGATTGACTTGCCGGGTTGGAGATATCGTAGCTTGATCAATGGAGACAATCTAACAGATGTGATAGTAACAGGTGATAATGGAACCATTGATGGACAGGGTTCCGTCTGGTGGGAACAATTCAGCTATCATGCCTTGAATTATAGCCGACCACATCTAGTGGAATTTACCGGATGCGAAAATGTTACTGTATCAAATTTAACCCTCTTGAACTCCCCTGCTTGGCACATTCATCCGACATACTGCAGCAATATGCAAGTTCTAAACATAACTCTTCATGCTTTTCATGCATCTCCATATACTAGCGGTATAGTCCCAGATTCTTCAGAAAATGTTTGCATTGAGAACTGCAACATTAGTATGGGGCATGACGCAATTGTTCTCAAGAGCGGTTGGGATGAGTATGGAATTGCCTTCGGAAAACCAACAAAAAATGTACACATCCGTGGCGTTAACCTTCAGTCTTCTTTAGGCTCCGGCCTGGCATTTGGCAGCGAGATGTCTGGAGGCATATCACATGTACGTGTAGAGCAACTTCGTCTACATGACTCATTCATCGGCATTGCACTCAAGACAGCTATGGGAAGAGGAGGTTATATGAAAGACATAGTTATATCCAATGTTGAAATGGAGAACATTCACTTGGCAATTGAGGCTACTGGTCAGATCGGTTCACATCCTGATGAAAAATATGATCCTGATGAACTGCCAGTAGTTAAAGGAATCACCTTTGAGAATATGGTCGGCACTAATGTTACATTAGCCGGAAGCTTTTCTGGACTCGAAAAATCGCCTTTCACATCCATCTGTCTCTCGAATATCTCATTCTCCCTCACTTGGAATTCGTCTACCTCATGGTTCTGTTCCAACGTGATCGGTTTTTCGCATGAAGTTTCTCCCAAACCATGTCCAAATCTCCAAGACTCGGCTTTTAACTCTTCCGCAGCTTGCTTCTTTCCCTTATATAATTATGCTTCAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

49.27

Weight (kDa)

5.46

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 762
AccI GTMKAC 2 cut(s) 913, 1220
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 216, 236, 678, 762, 1314
AclWI GGATC 4 cut(s) 92, 312, 325, 1061
AcsI RAATTY 3 cut(s) 536, 568, 1213
AcuI CTGAAG 3 cut(s) 681, 815, 1332
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 2 cut(s) 810, 894
AfiI CCNNNNNNNGG 6 cut(s) 246, 365, 483, 594, 1209, 1297
AflIII ACRYGT 2 cut(s) 889, 895
AgsI TTSAA 4 cut(s) 160, 511, 583, 998
AhlI ACTAGT 1 cut(s) 41
AjnI CCWGG 3 cut(s) 291, 321, 852
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 998, 1030
AleI CACNNNNGTG 1 cut(s) 816
AluBI AGCT 7 cut(s) 91, 226, 405, 498, 950, 1143, 1319
AluI AGCT 7 cut(s) 91, 226, 405, 498, 950, 1143, 1319
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 3 cut(s) 138, 411, 1187
AlwI GGATC 4 cut(s) 92, 312, 325, 1061
AoxI GGCC 1 cut(s) 850
ApeKI GCWGC 4 cut(s) 47, 618, 864, 1316
ApoI RAATTY 3 cut(s) 536, 568, 1213
Asp700I GAANNNNTTC 2 cut(s) 92, 1144
AspLEI GCGC 1 cut(s) 305
AsuC2I CCSGG 2 cut(s) 240, 387
AsuHPI GGTGA 3 cut(s) 262, 458, 1090
BamHI GGATCC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 302
BarI GAAGNNNNNNTAC 2 cut(s) 891, 923
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 4 cut(s) 34, 630, 876, 1328
BccI CCATC 4 cut(s) 53, 314, 458, 1184
BciT130I CCWGG 3 cut(s) 293, 323, 854
BclI TGATCA 1 cut(s) 408
BcnI CCSGG 2 cut(s) 240, 387
BcoDI GTCTC 3 cut(s) 138, 411, 1187
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 3 cut(s) 42, 530, 675
BfmI CTRYAG 1 cut(s) 616
BfoI RGCGCY 1 cut(s) 306
BisI GCNGC 4 cut(s) 48, 619, 865, 1317
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 4 cut(s) 49, 620, 866, 1318
Bme1390I CCNGG 5 cut(s) 240, 293, 323, 387, 854
BmiI GGNNCC 6 cut(s) 304, 319, 351, 457, 475, 847
BmrFI CCNGG 5 cut(s) 240, 293, 323, 387, 854
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 2 cut(s) 536, 671
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 897
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 740, 926
BpuMI CCSGG 2 cut(s) 240, 387
BsaAI YACGTR 1 cut(s) 896
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 321, 817
BsaWI WCCGGW 2 cut(s) 254, 542
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 6 cut(s) 246, 365, 483, 594, 1209, 1297
Bse1I ACTGG 3 cut(s) 341, 1036, 1082
Bse3DI GCAATG 1 cut(s) 933
BseBI CCWGG 3 cut(s) 293, 323, 854
BseDI CCNNGG 2 cut(s) 321, 817
BseGI GGATG 6 cut(s) 551, 604, 775, 813, 1048, 1172
BseLI CCNNNNNNNGG 6 cut(s) 246, 365, 483, 594, 1209, 1297
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 2 cut(s) 65, 236
BseNI ACTGG 3 cut(s) 341, 1036, 1082
BseRI GAGGAG 1 cut(s) 975
BseXI GCAGC 4 cut(s) 34, 630, 876, 1328
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 852
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 6 cut(s) 240, 255, 386, 543, 849, 1137
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 6 cut(s) 246, 365, 483, 594, 1209, 1297
BsmAI GTCTC 3 cut(s) 138, 411, 1187
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 852
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 808
Bsp143I GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 5 cut(s) 216, 236, 678, 762, 1314
BspANI GGCC 1 cut(s) 852
BspCNI CTCAG 2 cut(s) 64, 235
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 6 cut(s) 304, 319, 351, 457, 475, 847
BspMAI CTGCAG 1 cut(s) 620
BspPI GGATC 4 cut(s) 92, 312, 325, 1061
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 762
BsrDI GCAATG 1 cut(s) 933
BsrGI TGTACA 1 cut(s) 808
BsrI ACTGG 3 cut(s) 341, 1036, 1082
BssECI CCNNGG 2 cut(s) 321, 817
BssMI GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 3 cut(s) 293, 323, 854
Bst4CI ACNGT 4 cut(s) 113, 166, 346, 562
Bst6I CTCTTC 4 cut(s) 293, 651, 952, 1315
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 808
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 1321
BstDEI CTNAG 2 cut(s) 51, 222
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 6 cut(s) 551, 604, 775, 813, 1048, 1172
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 6 cut(s) 100, 320, 411, 1041, 1069, 1248
BstMAI GTCTC 3 cut(s) 138, 411, 1187
BstMBI GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 659, 1025
BstNI CCWGG 3 cut(s) 293, 323, 854
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 5 cut(s) 238, 291, 321, 385, 852
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 34, 630, 876, 1328
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 1 cut(s) 852
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 6 cut(s) 551, 604, 775, 813, 1048, 1172
BtsIMutI CAGTG 2 cut(s) 118, 334
Cac8I GCNNGC 1 cut(s) 1321
CfoI GCGC 1 cut(s) 305
CseI GACGC 1 cut(s) 752
Csp6I GTAC 2 cut(s) 809, 893
CviAII CATG 9 cut(s) 503, 650, 659, 740, 890, 917, 1227, 1259, 1278
CviQI GTAC 2 cut(s) 809, 893
DdeI CTNAG 2 cut(s) 51, 222
DinI GGCGCC 1 cut(s) 304
DpnI GATC 6 cut(s) 99, 319, 410, 1040, 1068, 1247
DpnII GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
DraIII CACNNNGTG 1 cut(s) 115
Eam1104I CTCTTC 4 cut(s) 293, 651, 952, 1315
EarI CTCTTC 4 cut(s) 293, 651, 952, 1315
EciI GGCGGA 1 cut(s) 225
Eco32I GATATC 1 cut(s) 398
Eco57I CTGAAG 3 cut(s) 681, 815, 1332
EcoRI GAATTC 1 cut(s) 1213
EcoRII CCWGG 3 cut(s) 291, 321, 852
EcoRV GATATC 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 664
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 9 cut(s) 506, 653, 662, 743, 893, 920, 1230, 1262, 1281
FaqI GGGAC 1 cut(s) 671
FatI CATG 9 cut(s) 502, 649, 658, 739, 889, 916, 1226, 1258, 1277
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 2 cut(s) 913, 1220
Fnu4HI GCNGC 4 cut(s) 48, 619, 865, 1317
FokI GGATG 6 cut(s) 558, 591, 782, 800, 1035, 1159
Fsp4HI GCNGC 4 cut(s) 48, 619, 865, 1317
FspBI CTAG 3 cut(s) 42, 530, 675
GlaI GCGC 1 cut(s) 304
GluI GCNGC 4 cut(s) 48, 619, 865, 1317
GsuI CTGGAG 1 cut(s) 897
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 1 cut(s) 852
HapII CCGG 6 cut(s) 240, 255, 386, 543, 849, 1137
HgaI GACGC 1 cut(s) 752
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 9 cut(s) 506, 653, 662, 743, 893, 920, 1230, 1262, 1281
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 2 cut(s) 89, 1141
HinfI GANTC 7 cut(s) 28, 296, 692, 920, 1095, 1152, 1295
HpaI GTTAAC 1 cut(s) 826
HpaII CCGG 6 cut(s) 240, 255, 386, 543, 849, 1137
HphI GGTGA 3 cut(s) 262, 458, 1090
Hpy166II GTNNAC 5 cut(s) 811, 826, 914, 1046, 1221
Hpy188I TCNGA 4 cut(s) 609, 700, 791, 1038
Hpy188III TCNNGA 8 cut(s) 580, 757, 876, 943, 1052, 1070, 1149, 1186
Hpy8I GTNNAC 5 cut(s) 811, 826, 914, 1046, 1221
HpyAV CCTTC 4 cut(s) 58, 369, 796, 839
HpyCH4III ACNGT 4 cut(s) 113, 166, 346, 562
HpyCH4IV ACGT 2 cut(s) 895, 1242
HpyCH4V TGCA 6 cut(s) 618, 628, 662, 711, 723, 938
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 1025
HpyF3I CTNAG 2 cut(s) 51, 222
HpySE526I ACGT 2 cut(s) 895, 1242
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 9 cut(s) 506, 653, 662, 743, 893, 920, 1230, 1262, 1281
HspAI GCGC 1 cut(s) 303
KasI GGCGCC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 826
Kzo9I GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 2 cut(s) 134, 851
Lsp1109I GCAGC 4 cut(s) 34, 630, 876, 1328
LweI GCATC 2 cut(s) 536, 671
MaeI CTAG 3 cut(s) 42, 530, 675
MaeII ACGT 2 cut(s) 895, 1242
MaeIII GTNAC 4 cut(s) 117, 439, 556, 1126
MalI GATC 6 cut(s) 99, 319, 410, 1040, 1068, 1247
MbiI CCGCTC 1 cut(s) 762
MboI GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
MboII GAAGA 8 cut(s) 16, 97, 280, 638, 687, 828, 969, 1302
MfeI CAATTG 2 cut(s) 747, 1020
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 9 cut(s) 491, 511, 536, 568, 747, 780, 1020, 1213, 1339
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 3 cut(s) 914, 1146, 1289
MmeI TCCRAC 4 cut(s) 121, 371, 632, 1263
Mph1103I ATGCAT 1 cut(s) 664
MroXI GAANNNNTTC 2 cut(s) 92, 1144
MseI TTAA 5 cut(s) 264, 572, 825, 1089, 1305
MslI CAYNNNNRTG 4 cut(s) 731, 816, 894, 1053
MspI CCGG 6 cut(s) 240, 255, 386, 543, 849, 1137
MspR9I CCNGG 5 cut(s) 240, 293, 323, 387, 854
MunI CAATTG 2 cut(s) 747, 1020
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 3 cut(s) 293, 323, 854
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 659, 1025
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 2 cut(s) 240, 387
NdeII GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
NlaIII CATG 9 cut(s) 506, 653, 662, 743, 893, 920, 1230, 1262, 1281
NlaIV GGNNCC 6 cut(s) 304, 319, 351, 457, 475, 847
NmeAIII GCCGAG 1 cut(s) 1277
NmuCI GTSAC 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 893
OliI CACNNNNGTG 1 cut(s) 816
PciI ACATGT 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 92, 1144
PfeI GAWTC 4 cut(s) 28, 296, 692, 1095
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 4 cut(s) 49, 620, 866, 1318
PleI GAGTC 3 cut(s) 914, 1146, 1289
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 3 cut(s) 914, 1146, 1289
Ppu21I YACGTR 1 cut(s) 896
PscI ACATGT 1 cut(s) 889
Psp6I CCWGG 3 cut(s) 291, 321, 852
PspGI CCWGG 3 cut(s) 291, 321, 852
PspN4I GGNNCC 6 cut(s) 304, 319, 351, 457, 475, 847
PstI CTGCAG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 317
RsaI GTAC 2 cut(s) 810, 894
RsaNI GTAC 2 cut(s) 809, 893
RseI CAYNNNNRTG 4 cut(s) 731, 816, 894, 1053
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 5 cut(s) 264, 572, 825, 1089, 1305
SatI GCNGC 4 cut(s) 48, 619, 865, 1317
Sau3AI GATC 6 cut(s) 97, 317, 408, 1038, 1066, 1245
SchI GAGTC 3 cut(s) 914, 1146, 1289
ScrFI CCNGG 5 cut(s) 240, 293, 323, 387, 854
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 2 cut(s) 536, 671
SfcI CTRYAG 1 cut(s) 616
SfoI GGCGCC 1 cut(s) 304
SmiMI CAYNNNNRTG 4 cut(s) 731, 816, 894, 1053
SmlI CTYRAG 2 cut(s) 755, 941
SmoI CTYRAG 2 cut(s) 755, 941
SpeI ACTAGT 1 cut(s) 41
Sse9I AATT 9 cut(s) 491, 511, 536, 568, 747, 780, 1020, 1213, 1339
SsiI CCGC 5 cut(s) 216, 236, 678, 762, 1314
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 3 cut(s) 42, 530, 675
StyD4I CCNGG 5 cut(s) 238, 291, 321, 385, 852
TaaI ACNGT 4 cut(s) 113, 166, 346, 562
TaiI ACGT 2 cut(s) 898, 1245
TaqI TCGA 4 cut(s) 96, 370, 1155, 1187
TasI AATT 9 cut(s) 491, 511, 536, 568, 747, 780, 1020, 1213, 1339
TatI WGTACW 1 cut(s) 808
TfiI GAWTC 4 cut(s) 28, 296, 692, 1095
Tru1I TTAA 5 cut(s) 264, 572, 825, 1089, 1305
Tru9I TTAA 5 cut(s) 264, 572, 825, 1089, 1305
TscAI CASTG 2 cut(s) 118, 341
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 4 cut(s) 47, 618, 864, 1316
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 9 cut(s) 17, 593, 638, 647, 916, 986, 1071, 1089, 1275
TspGWI ACGGA 3 cut(s) 84, 466, 806
TspRI CASTG 2 cut(s) 118, 341
XapI RAATTY 3 cut(s) 536, 568, 1213
XceI RCATGY 1 cut(s) 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XmiI GTMKAC 2 cut(s) 913, 1220
XmnI GAANNNNTTC 2 cut(s) 92, 1144
XspI CTAG 3 cut(s) 42, 530, 675
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.