Rorug06G0245800

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005900
Physical Location & Seq
Forward (+)
39206632 .. 39207804
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0245800.1

Sequence Viewer

Length: 1173 bp
ATGCGAAGAGACATTCATGCTCCACCACAACTCCCATGGTTAGTTCACCCTCAAGTCCCAGCCTTCCCTAGCTACTTGAGCTTCTCAAGCCTCTCTGAGGGAAAAATTTTCAAGTTTAGGTTCCCTAGGACAAATTACGGTACGTTGTTTTGTGGCTCTTCCAAAGGTTGGCTGTTTATGTCTAAGATGTACGGATGGCTGAGTTCTGAACAACTGTTTTTACTGAATCCAATTTCAGGAGCACGGCACCAACTACCCTACTTAGTGCATTGTTCCACTGTTGAGGTACTCGCGTTATCCAGCAATGATATCTCAGAGTGTATAGTGGCAATAGTTCTTAATGATGACAAAGAATTGGGATTGTGTAGACCTGGAGACAAAAGCTGGAGTGTGTTCCAAGTATTAGATGAGACCAACTATGTGGGTGACATAACCAAGTTATTGTTTTCCTCTTCGGGTACGCTATTTGCCTTGGTTGAGTACTGTAGTGGTGCCAATGGTGTTGGTGCAGTTCAGACTTTGAAACTTGGAGGAGACATTGAAGTGAAATTGCAGTTGGTCTATTACGAACAAAATTGGTGGATCAATAATGGGCTGATCGATGTCTTTCCCGGAGTGGCATACCATGCATATTTGTTAGAATCAACCAACAACGAAGTTCTGTTGATCCATCATTTTTATGATCATGTTGATGGAGAAGATGTGAATGAGGATAACATGGAAGGCAACAACAACCACGAACAAGGAGATGAGGTCCTCATCGAGGAACTAGGTAATGAGGATATGGGAGGAGAAGGCAATAATGAGGAGAATGAGGATGATAATCCAGCTGGCTTTGTTTACCTTAGGACAAAATGTTTCGGAATATATAAGATTGATGCTGACAATGGCAACTTTCTAAAGGTTGAAACTTTGGGGGACCAAATATTATTTGTGGCAAACTATGGTTCTTCCTTGGCCCTTCCGGCTTCTGATTTCAAAGAGTTGCAGGGGAATTGCATATATTTTGCAACAATAGGAGGCTTTAGTCCACATCTAGAATCCTGTATATCACGTGAGATTGGCATCTTCTACCTAGATAGTGGAAGAGTCGAGCGACCCTTTCCAAGTATGATGATACCAACAGACGGCTGTGGACCGAGTTGGTTTACCCCAAGTTTACTGGATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

390

Amino Acids

43.53

Weight (kDa)

4.55

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 28 - 357 4.1e-34 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 246, 491
AccB7I CCANNNNNTGG 1 cut(s) 168
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 293
AclWI GGATC 2 cut(s) 590, 661
AcsI RAATTY 1 cut(s) 105
AcvI CACGTG 1 cut(s) 1055
AfaI GTAC 5 cut(s) 142, 191, 288, 460, 482
AfiI CCNNNNNNNGG 5 cut(s) 97, 168, 236, 763, 1127
AgsI TTSAA 5 cut(s) 112, 523, 542, 908, 979
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 4 cut(s) 72, 81, 384, 830
AluI AGCT 4 cut(s) 72, 81, 384, 830
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 4 cut(s) 3, 369, 404, 528
AlwI GGATC 2 cut(s) 590, 661
AoxI GGCC 1 cut(s) 957
ApoI RAATTY 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 125
AspS9I GGNCC 4 cut(s) 754, 919, 958, 1136
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 38, 437
AvaII GGWCC 3 cut(s) 754, 919, 1136
AvrII CCTAGG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 845
BaeI ACNNNNGTAYC 2 cut(s) 278, 311
BanI GGYRCC 2 cut(s) 246, 491
BbrPI CACGTG 1 cut(s) 1055
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 3 cut(s) 189, 678, 686
BceAI ACGGC 2 cut(s) 260, 1144
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 4 cut(s) 3, 369, 404, 528
BfaI CTAG 5 cut(s) 69, 126, 770, 1037, 1076
BfmI CTRYAG 1 cut(s) 484
BglI GCCNNNNNGGC 1 cut(s) 965
BlnI CCTAGG 1 cut(s) 125
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 2 cut(s) 372, 612
Bme18I GGWCC 3 cut(s) 754, 919, 1136
BmgT120I GGNCC 4 cut(s) 754, 919, 958, 1136
BmiI GGNNCC 4 cut(s) 122, 248, 493, 920
BmrFI CCNGG 2 cut(s) 372, 612
BmsI GCATC 2 cut(s) 868, 1074
BpmI CTGGAG 2 cut(s) 393, 406
BpuEI CTTGAG 3 cut(s) 36, 70, 97
BpuMI CCSGG 1 cut(s) 612
Bsa29I ATCGAT 1 cut(s) 600
BsaAI YACGTR 1 cut(s) 1055
BsaBI GATNNNNATC 2 cut(s) 822, 1064
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 35, 125, 471, 954
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 687, 717, 738, 768
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 168, 236, 763, 1127
Bse1I ACTGG 1 cut(s) 1167
Bse21I CCTNAGG 1 cut(s) 845
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 2 cut(s) 822, 1064
BseBI CCWGG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 4 cut(s) 35, 125, 471, 954
BseGI GGATG 2 cut(s) 200, 823
BseJI GATNNNNATC 2 cut(s) 822, 1064
BseLI CCNNNNNNNGG 5 cut(s) 97, 168, 236, 763, 1127
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 87, 191, 327
BseNI ACTGG 1 cut(s) 1167
BseRI GAGGAG 3 cut(s) 546, 804, 821
BseYI CCCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 1 cut(s) 959
BshNI GGYRCC 2 cut(s) 246, 491
BshVI ATCGAT 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 612, 965
BslFI GGGAC 2 cut(s) 41, 932
BslI CCNNNNNNNGG 5 cut(s) 97, 168, 236, 763, 1127
BsmAI GTCTC 4 cut(s) 3, 369, 404, 528
BsmFI GGGAC 2 cut(s) 41, 932
BsnI GGCC 1 cut(s) 959
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 4 cut(s) 582, 597, 666, 682
Bsp19I CCATGG 1 cut(s) 35
BspANI GGCC 1 cut(s) 959
BspCNI CTCAG 3 cut(s) 88, 192, 326
BspDI ATCGAT 1 cut(s) 600
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 4 cut(s) 122, 248, 493, 920
BspPI GGATC 2 cut(s) 590, 661
BspQI GCTCTTC 1 cut(s) 163
BspT107I GGYRCC 2 cut(s) 246, 491
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 1167
BssECI CCNNGG 4 cut(s) 35, 125, 471, 954
BssMI GATC 4 cut(s) 582, 597, 666, 682
BssT1I CCWWGG 4 cut(s) 35, 125, 471, 954
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 4 cut(s) 140, 216, 280, 485
Bst6I CTCTTC 3 cut(s) 163, 457, 1081
BstAPI GCANNNNNTGC 1 cut(s) 626
BstBAI YACGTR 1 cut(s) 1055
BstC8I GCNNGC 1 cut(s) 832
BstDEI CTNAG 6 cut(s) 96, 183, 200, 262, 313, 845
BstDSI CCRYGG 1 cut(s) 35
BstENI CCTNNNNNAGG 2 cut(s) 95, 761
BstF5I GGATG 2 cut(s) 200, 823
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 4 cut(s) 585, 600, 669, 685
BstMAI GTCTC 4 cut(s) 3, 369, 404, 528
BstMBI GATC 4 cut(s) 582, 597, 666, 682
BstMWI GCNNNNNNNGC 4 cut(s) 78, 87, 626, 965
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 370, 610
BstSFI CTRYAG 1 cut(s) 484
BstUI CGCG 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 421
Bsu15I ATCGAT 1 cut(s) 600
Bsu36I CCTNAGG 1 cut(s) 845
BsuRI GGCC 1 cut(s) 959
BsuTUI ATCGAT 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 200, 823
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 832
Cfr13I GGNCC 4 cut(s) 754, 919, 958, 1136
ClaI ATCGAT 1 cut(s) 600
Csp6I GTAC 5 cut(s) 141, 190, 287, 459, 481
CspCI CAANNNNNGTGG 2 cut(s) 560, 595
CviAII CATG 5 cut(s) 17, 36, 626, 686, 718
CviQI GTAC 5 cut(s) 141, 190, 287, 459, 481
DdeI CTNAG 6 cut(s) 96, 183, 200, 262, 313, 845
DpnI GATC 4 cut(s) 584, 599, 668, 684
DpnII GATC 4 cut(s) 582, 597, 666, 682
Eam1104I CTCTTC 3 cut(s) 163, 457, 1081
EarI CTCTTC 3 cut(s) 163, 457, 1081
Eco130I CCWWGG 4 cut(s) 35, 125, 471, 954
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 3 cut(s) 754, 919, 1136
Eco72I CACGTG 1 cut(s) 1055
Eco81I CCTNAGG 1 cut(s) 845
EcoNI CCTNNNNNAGG 2 cut(s) 95, 761
EcoO109I RGGNCCY 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 4 cut(s) 35, 125, 471, 954
EcoT22I ATGCAT 1 cut(s) 631
ErhI CCWWGG 4 cut(s) 35, 125, 471, 954
FaeI CATG 5 cut(s) 20, 39, 629, 689, 721
FaqI GGGAC 2 cut(s) 41, 932
FatI CATG 5 cut(s) 16, 35, 625, 685, 717
FbaI TGATCA 1 cut(s) 682
FblI GTMKAC 1 cut(s) 367
FokI GGATG 2 cut(s) 207, 830
FspBI CTAG 5 cut(s) 69, 126, 770, 1037, 1076
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 2 cut(s) 393, 406
HaeIII GGCC 1 cut(s) 959
HapII CCGG 2 cut(s) 612, 965
Hin1II CATG 5 cut(s) 20, 39, 629, 689, 721
HinfI GANTC 4 cut(s) 226, 641, 1040, 1089
HpaII CCGG 2 cut(s) 612, 965
HphI GGTGA 2 cut(s) 38, 437
Hpy166II GTNNAC 7 cut(s) 46, 368, 841, 1031, 1136, 1149, 1160
Hpy188I TCNGA 6 cut(s) 97, 208, 316, 516, 863, 973
Hpy188III TCNNGA 2 cut(s) 237, 1037
Hpy8I GTNNAC 7 cut(s) 46, 368, 841, 1031, 1136, 1149, 1160
HpyAV CCTTC 4 cut(s) 73, 716, 788, 971
HpyCH4III ACNGT 4 cut(s) 140, 216, 280, 485
HpyCH4IV ACGT 2 cut(s) 143, 1054
HpyCH4V TGCA 7 cut(s) 268, 509, 553, 629, 988, 999, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 87, 626, 965
HpyF3I CTNAG 6 cut(s) 96, 183, 200, 262, 313, 845
HpySE526I ACGT 2 cut(s) 143, 1054
Hsp92II CATG 5 cut(s) 20, 39, 629, 689, 721
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 4 cut(s) 582, 597, 666, 682
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 25, 239
LweI GCATC 2 cut(s) 868, 1074
MaeI CTAG 5 cut(s) 69, 126, 770, 1037, 1076
MaeII ACGT 2 cut(s) 143, 1054
MaeIII GTNAC 1 cut(s) 425
MalI GATC 4 cut(s) 584, 599, 668, 684
MboI GATC 4 cut(s) 582, 597, 666, 682
MboII GAAGA 7 cut(s) 18, 150, 444, 710, 942, 1060, 1098
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 7 cut(s) 105, 133, 231, 353, 548, 574, 994
MlyI GAGTC 1 cut(s) 1098
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 3 cut(s) 542, 678, 690
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 2 cut(s) 612, 965
MspR9I CCNGG 2 cut(s) 372, 612
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 78, 87, 626, 965
NciI CCSGG 1 cut(s) 612
NcoI CCATGG 1 cut(s) 35
NdeII GATC 4 cut(s) 582, 597, 666, 682
NlaIII CATG 5 cut(s) 20, 39, 629, 689, 721
NlaIV GGNNCC 4 cut(s) 122, 248, 493, 920
NmuCI GTSAC 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 226, 641, 1040
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 610
PleI GAGTC 1 cut(s) 1097
PmaCI CACGTG 1 cut(s) 1055
PmlI CACGTG 1 cut(s) 1055
PpsI GAGTC 1 cut(s) 1097
Ppu21I YACGTR 1 cut(s) 1055
PpuMI RGGWCCY 1 cut(s) 754
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 370
PspCI CACGTG 1 cut(s) 1055
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 4 cut(s) 122, 248, 493, 920
PspPI GGNCC 4 cut(s) 754, 919, 958, 1136
PspPPI RGGWCCY 1 cut(s) 754
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 5 cut(s) 142, 191, 288, 460, 482
RsaNI GTAC 5 cut(s) 141, 190, 287, 459, 481
RseI CAYNNNNRTG 3 cut(s) 542, 678, 690
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 4 cut(s) 582, 597, 666, 682
Sau96I GGNCC 4 cut(s) 754, 919, 958, 1136
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 1 cut(s) 1098
ScrFI CCNGG 2 cut(s) 372, 612
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 2 cut(s) 868, 1074
SfcI CTRYAG 1 cut(s) 484
SinI GGWCC 3 cut(s) 754, 919, 1136
SmiMI CAYNNNNRTG 3 cut(s) 542, 678, 690
SmlI CTYRAG 3 cut(s) 51, 76, 85
SmoI CTYRAG 3 cut(s) 51, 76, 85
Sse9I AATT 7 cut(s) 105, 133, 231, 353, 548, 574, 994
SspI AATATT 1 cut(s) 927
SspMI CTAG 5 cut(s) 69, 126, 770, 1037, 1076
StyD4I CCNGG 2 cut(s) 370, 610
StyI CCWWGG 4 cut(s) 35, 125, 471, 954
TaaI ACNGT 4 cut(s) 140, 216, 280, 485
TaiI ACGT 2 cut(s) 146, 1057
TaqI TCGA 3 cut(s) 600, 762, 1092
TaqII GACCGA 1 cut(s) 1153
TasI AATT 7 cut(s) 105, 133, 231, 353, 548, 574, 994
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 3 cut(s) 226, 641, 1040
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 3 cut(s) 754, 919, 1136
XagI CCTNNNNNAGG 2 cut(s) 95, 761
XapI RAATTY 1 cut(s) 105
XbaI TCTAGA 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmaJI CCTAGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 5 cut(s) 69, 126, 770, 1037, 1076
ZrmI AGTACT 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.