Rorug06G0245700

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005900
Physical Location & Seq
Forward (+)
39188022 .. 39189365
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0245700.1

Sequence Viewer

Length: 1344 bp
ATGGGGAATTGGAACATGCTCTCAAACAGGATAGATCAGACTCTATTTTTAGTTTTGGATAAACTGGTAGACTACCTCTACAACCTTGTAGACTATGTGTCGTTAATCAGGTGTGTTTTCTTCAGGAAGCTTCAATACACGAAGCAAAAGTACAGTAGCTCCTGGCAGGAAGCACCTGAAGATGTCATAGAGATGATTCTTAAGCACACGAACCTTAGTGGTCGAGTACGATTCAGCAGTTTGTGCAAGTTTTGGAGGTGTGTTTCGATGCGAAGAGACATTCATGCTCCACCTCAACTCCCATGGTTAGTTCACCCTCAAGTCCCAGCCTTCCCTAGCTACTTGAGCTTCTCAAGCCTCTCTGAGGGAAAAATTTTCAAGTTTAGGTTCCCTAGGACAAATTACGGTACGTTGTTTTGTGGCTCTTCCAAAGGTTGGCTGTTTATGTCTAAGATGTACGGATGGCTGAGTTCTGAACAACTGTTTTTACTGAATCCAATTTCAGGAGCACGGCACCAACTACCCTACTTAGTGAATTGTTCCACTGTTGAGGTACTCGCGTTATCCAGCAATGATATCTCAGAGTGTATAGTGGCAATAGTTCTTAATGATGACAAAGAATTGGGATTGTGTAGACCTGGAGACAAAAGCTGGAGTGTGTTCCAAGTATTAGATGAGACCAACTATGTGGGTGACATAACCAGGTTATTGTTTTCCTCTTCGGGTACGCTATTTGCCTTGGTTGAGTACTGTAGTGGTGCCAATGGTGTTGGTGCAGTTCAGACTTTGAAACTTGGGGGAGACATTGAAGTGAAATTGCAGTTGGTCTATTTCGAACAAAATTGGTGGATCAATAATGGGCTGATCGATGTCTTTCCCGGAGTGGCATGCCATGCATATTTGTTAGAATCAACCAACAACGAAGTTCTGTTGATCCATCATTTTTATGAGGATATGGGAGGAGAAGGCAATAATGAGGAGAATGAGGATAATAAACCAGATGGCTTTGTTTACTTTAGGACAAAATGTTTCGGAATATATAAGATTGATGCTGACAATTGCAACTTTCTAAAGGTACAAACTTTGGGGGACCAAATATTATTTGTGGCAAACTATGGTTCTTCCTTGGCCCTTCCGGCTTCTGATTTCAAAGAGTTGCAGGGGAATTGCATATATTTTGCAACAATAGGAGGCTTTAGTCCACATCTAGAATCCTGTATATCACGTGAGATTGGCATCTTCTACCTAGATAGTGGAAGAGTCGAGCGACCCTTTCCAAGTATGATGATACCAAGAGACGGCTGTGGACCGAGTTGGTTTACTCCAAGTTTACTGGATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

447

Amino Acids

50.76

Weight (kDa)

5.47

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 117 - 414 3.1e-35 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 513, 758
AccB7I CCANNNNNTGG 1 cut(s) 435
AccI GTMKAC 3 cut(s) 69, 90, 634
AccII CGCG 1 cut(s) 560
AclWI GGATC 2 cut(s) 857, 928
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 2 cut(s) 106, 198
AcvI CACGTG 1 cut(s) 1226
AfaI GTAC 8 cut(s) 152, 228, 409, 458, 555, 727, 749, 1077
AfiI CCNNNNNNNGG 4 cut(s) 364, 435, 503, 1298
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 5 cut(s) 134, 379, 790, 809, 1150
AhdI GACNNNNNGTC 1 cut(s) 97
AjnI CCWGG 3 cut(s) 161, 637, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
AluBI AGCT 5 cut(s) 130, 159, 339, 348, 651
AluI AGCT 5 cut(s) 130, 159, 339, 348, 651
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 5 cut(s) 270, 636, 671, 795, 1290
AlwI GGATC 2 cut(s) 857, 928
AoxI GGCC 1 cut(s) 1128
ApoI RAATTY 1 cut(s) 372
AspA2I CCTAGG 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 1090, 1129, 1307
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 2 cut(s) 305, 704
AsuII TTCGAA 1 cut(s) 834
AvaII GGWCC 2 cut(s) 1090, 1307
AvrII CCTAGG 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 545, 578
BanI GGYRCC 2 cut(s) 513, 758
BarI GAAGNNNNNNTAC 4 cut(s) 119, 134, 151, 166
BbrPI CACGTG 1 cut(s) 1226
Bbv12I GWGCWC 1 cut(s) 511
BccI CCATC 3 cut(s) 456, 945, 995
BceAI ACGGC 2 cut(s) 527, 1315
BciT130I CCWGG 3 cut(s) 163, 639, 703
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 5 cut(s) 270, 636, 671, 795, 1290
BfaI CTAG 4 cut(s) 336, 393, 1208, 1247
BfmI CTRYAG 1 cut(s) 751
BfrI CTTAAG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 1136
BlnI CCTAGG 1 cut(s) 392
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 4 cut(s) 163, 639, 703, 879
Bme18I GGWCC 2 cut(s) 1090, 1307
BmeRI GACNNNNNGTC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 1090, 1129, 1307
BmiI GGNNCC 4 cut(s) 389, 515, 760, 1091
BmrFI CCNGG 4 cut(s) 163, 639, 703, 879
BmsI GCATC 3 cut(s) 258, 1039, 1245
BpmI CTGGAG 2 cut(s) 660, 673
Bpu14I TTCGAA 1 cut(s) 834
BpuEI CTTGAG 3 cut(s) 303, 337, 364
BpuMI CCSGG 1 cut(s) 879
Bsa29I ATCGAT 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 1226
BsaBI GATNNNNATC 1 cut(s) 1235
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 4 cut(s) 302, 392, 738, 1125
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 282, 312
Bsc4I CCNNNNNNNGG 4 cut(s) 364, 435, 503, 1298
Bse1I ACTGG 2 cut(s) 69, 1338
Bse3DI GCAATG 1 cut(s) 577
Bse8I GATNNNNATC 1 cut(s) 1235
BseBI CCWGG 3 cut(s) 163, 639, 703
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 4 cut(s) 302, 392, 738, 1125
BseGI GGATG 1 cut(s) 467
BseJI GATNNNNATC 1 cut(s) 1235
BseLI CCNNNNNNNGG 4 cut(s) 364, 435, 503, 1298
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 3 cut(s) 354, 458, 594
BseNI ACTGG 2 cut(s) 69, 1338
BseRI GAGGAG 2 cut(s) 975, 992
BseYI CCCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 1 cut(s) 1130
BshNI GGYRCC 2 cut(s) 513, 758
BshVI ATCGAT 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 511
BsiSI CCGG 2 cut(s) 879, 1136
BslFI GGGAC 2 cut(s) 308, 1103
BslI CCNNNNNNNGG 4 cut(s) 364, 435, 503, 1298
BsmAI GTCTC 5 cut(s) 270, 636, 671, 795, 1290
BsmBI CGTCTC 1 cut(s) 1290
BsmFI GGGAC 2 cut(s) 308, 1103
BsnI GGCC 1 cut(s) 1130
Bso31I GGTCTC 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 4 cut(s) 34, 849, 864, 933
Bsp19I CCATGG 1 cut(s) 302
BspANI GGCC 1 cut(s) 1130
BspCNI CTCAG 3 cut(s) 355, 459, 593
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 4 cut(s) 389, 515, 760, 1091
BspPI GGATC 2 cut(s) 857, 928
BspQI GCTCTTC 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 834
BspT107I GGYRCC 2 cut(s) 513, 758
BspTI CTTAAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 577
BsrI ACTGG 2 cut(s) 69, 1338
BssECI CCNNGG 4 cut(s) 302, 392, 738, 1125
BssMI GATC 4 cut(s) 34, 849, 864, 933
BssT1I CCWWGG 4 cut(s) 302, 392, 738, 1125
Bst2UI CCWGG 3 cut(s) 163, 639, 703
Bst4CI ACNGT 5 cut(s) 155, 407, 483, 547, 752
Bst6I CTCTTC 4 cut(s) 268, 430, 724, 1252
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 243, 893
BstBAI YACGTR 1 cut(s) 1226
BstBI TTCGAA 1 cut(s) 834
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 6 cut(s) 215, 363, 450, 467, 529, 580
BstDSI CCRYGG 1 cut(s) 302
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 560
BstKTI GATC 4 cut(s) 37, 852, 867, 936
BstMAI GTCTC 5 cut(s) 270, 636, 671, 795, 1290
BstMBI GATC 4 cut(s) 34, 849, 864, 933
BstMWI GCNNNNNNNGC 5 cut(s) 243, 345, 354, 893, 1136
BstNI CCWGG 3 cut(s) 163, 639, 703
BstNSI RCATGY 2 cut(s) 19, 891
BstSCI CCNGG 4 cut(s) 161, 637, 701, 877
BstSFI CTRYAG 1 cut(s) 751
BstUI CGCG 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 688
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 1 cut(s) 1130
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 889
Cfr13I GGNCC 3 cut(s) 1090, 1129, 1307
ClaI ATCGAT 1 cut(s) 867
CsiI ACCWGGT 1 cut(s) 701
Csp6I GTAC 8 cut(s) 151, 227, 408, 457, 554, 726, 748, 1076
CspCI CAANNNNNGTGG 2 cut(s) 827, 862
CviAII CATG 5 cut(s) 16, 284, 303, 888, 893
CviQI GTAC 8 cut(s) 151, 227, 408, 457, 554, 726, 748, 1076
DdeI CTNAG 6 cut(s) 215, 363, 450, 467, 529, 580
DpnI GATC 4 cut(s) 36, 851, 866, 935
DpnII GATC 4 cut(s) 34, 849, 864, 933
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 4 cut(s) 268, 430, 724, 1252
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 4 cut(s) 268, 430, 724, 1252
Eco130I CCWWGG 4 cut(s) 302, 392, 738, 1125
Eco31I GGTCTC 1 cut(s) 671
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 1090, 1307
Eco57I CTGAAG 2 cut(s) 106, 198
Eco72I CACGTG 1 cut(s) 1226
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 161, 637, 701
EcoRV GATATC 1 cut(s) 577
EcoT14I CCWWGG 4 cut(s) 302, 392, 738, 1125
EcoT22I ATGCAT 1 cut(s) 898
ErhI CCWWGG 4 cut(s) 302, 392, 738, 1125
Esp3I CGTCTC 1 cut(s) 1290
FaeI CATG 5 cut(s) 19, 287, 306, 891, 896
FaqI GGGAC 2 cut(s) 308, 1103
FatI CATG 5 cut(s) 15, 283, 302, 887, 892
FblI GTMKAC 3 cut(s) 69, 90, 634
FokI GGATG 1 cut(s) 474
FspBI CTAG 4 cut(s) 336, 393, 1208, 1247
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 2 cut(s) 660, 673
HaeIII GGCC 1 cut(s) 1130
HapII CCGG 2 cut(s) 879, 1136
Hin1II CATG 5 cut(s) 19, 287, 306, 891, 896
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 7 cut(s) 40, 196, 231, 493, 908, 1211, 1260
HpaII CCGG 2 cut(s) 879, 1136
HphI GGTGA 2 cut(s) 305, 704
Hpy166II GTNNAC 9 cut(s) 70, 91, 313, 635, 1012, 1202, 1307, 1320, 1331
Hpy188I TCNGA 7 cut(s) 39, 364, 475, 583, 783, 1034, 1144
Hpy188III TCNNGA 3 cut(s) 124, 504, 1208
Hpy8I GTNNAC 9 cut(s) 70, 91, 313, 635, 1012, 1202, 1307, 1320, 1331
HpyAV CCTTC 3 cut(s) 340, 959, 1142
HpyCH4III ACNGT 5 cut(s) 155, 407, 483, 547, 752
HpyCH4IV ACGT 2 cut(s) 410, 1225
HpyCH4V TGCA 8 cut(s) 246, 776, 820, 896, 1062, 1159, 1170, 1181
HpyF10VI GCNNNNNNNGC 5 cut(s) 243, 345, 354, 893, 1136
HpyF3I CTNAG 6 cut(s) 215, 363, 450, 467, 529, 580
HpySE526I ACGT 2 cut(s) 410, 1225
Hsp92II CATG 5 cut(s) 19, 287, 306, 891, 896
Kzo9I GATC 4 cut(s) 34, 849, 864, 933
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 3 cut(s) 164, 292, 506
LweI GCATC 3 cut(s) 258, 1039, 1245
MabI ACCWGGT 1 cut(s) 701
MaeI CTAG 4 cut(s) 336, 393, 1208, 1247
MaeII ACGT 2 cut(s) 410, 1225
MaeIII GTNAC 1 cut(s) 692
MalI GATC 4 cut(s) 36, 851, 866, 935
MboI GATC 4 cut(s) 34, 849, 864, 933
MboII GAAGA 8 cut(s) 112, 191, 285, 417, 711, 1113, 1231, 1269
MfeI CAATTG 1 cut(s) 1057
MhlI GDGCHC 1 cut(s) 511
MlyI GAGTC 2 cut(s) 34, 1269
Mph1103I ATGCAT 1 cut(s) 898
MseI TTAA 3 cut(s) 104, 201, 606
MslI CAYNNNNRTG 3 cut(s) 191, 809, 945
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 2 cut(s) 879, 1136
MspR9I CCNGG 4 cut(s) 163, 639, 703, 879
MunI CAATTG 1 cut(s) 1057
MvaI CCWGG 3 cut(s) 163, 639, 703
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 5 cut(s) 243, 345, 354, 893, 1136
NciI CCSGG 1 cut(s) 879
NcoI CCATGG 1 cut(s) 302
NdeII GATC 4 cut(s) 34, 849, 864, 933
NlaIII CATG 5 cut(s) 19, 287, 306, 891, 896
NlaIV GGNNCC 4 cut(s) 389, 515, 760, 1091
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 898
NspI RCATGY 2 cut(s) 19, 891
NspV TTCGAA 1 cut(s) 834
PaeI GCATGC 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 430
PfeI GAWTC 5 cut(s) 196, 231, 493, 908, 1211
PflMI CCANNNNNTGG 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 877
PleI GAGTC 2 cut(s) 34, 1268
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
PpsI GAGTC 2 cut(s) 34, 1268
Ppu21I YACGTR 1 cut(s) 1226
Psp6I CCWGG 3 cut(s) 161, 637, 701
PspCI CACGTG 1 cut(s) 1226
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 3 cut(s) 161, 637, 701
PspN4I GGNNCC 4 cut(s) 389, 515, 760, 1091
PspPI GGNCC 3 cut(s) 1090, 1129, 1307
RsaI GTAC 8 cut(s) 152, 228, 409, 458, 555, 727, 749, 1077
RsaNI GTAC 8 cut(s) 151, 227, 408, 457, 554, 726, 748, 1076
RseI CAYNNNNRTG 3 cut(s) 191, 809, 945
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 3 cut(s) 104, 201, 606
Sau3AI GATC 4 cut(s) 34, 849, 864, 933
Sau96I GGNCC 3 cut(s) 1090, 1129, 1307
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 2 cut(s) 34, 1269
ScrFI CCNGG 4 cut(s) 163, 639, 703, 879
SduI GDGCHC 1 cut(s) 511
SexAI ACCWGGT 1 cut(s) 701
SfaNI GCATC 3 cut(s) 258, 1039, 1245
SfcI CTRYAG 1 cut(s) 751
SfuI TTCGAA 1 cut(s) 834
SinI GGWCC 2 cut(s) 1090, 1307
SmiMI CAYNNNNRTG 3 cut(s) 191, 809, 945
SmlI CTYRAG 4 cut(s) 200, 318, 343, 352
SmoI CTYRAG 4 cut(s) 200, 318, 343, 352
SphI GCATGC 1 cut(s) 891
SspI AATATT 1 cut(s) 1098
SspMI CTAG 4 cut(s) 336, 393, 1208, 1247
StyD4I CCNGG 4 cut(s) 161, 637, 701, 877
StyI CCWWGG 4 cut(s) 302, 392, 738, 1125
TaaI ACNGT 5 cut(s) 155, 407, 483, 547, 752
TaiI ACGT 2 cut(s) 413, 1228
TaqI TCGA 5 cut(s) 223, 266, 834, 867, 1263
TaqII GACCGA 1 cut(s) 1324
TatI WGTACW 2 cut(s) 150, 747
TfiI GAWTC 5 cut(s) 196, 231, 493, 908, 1211
Tru1I TTAA 3 cut(s) 104, 201, 606
Tru9I TTAA 3 cut(s) 104, 201, 606
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 1 cut(s) 692
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 435
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 1090, 1307
XagI CCTNNNNNAGG 1 cut(s) 362
XapI RAATTY 1 cut(s) 372
XbaI TCTAGA 1 cut(s) 1207
XceI RCATGY 2 cut(s) 19, 891
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 3 cut(s) 69, 90, 634
XspI CTAG 4 cut(s) 336, 393, 1208, 1247
ZrmI AGTACT 1 cut(s) 749
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.