Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009655

Physical Location & Seq

Genomic Coordinates Forward (+)

33418030 .. 33419025

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGAGCTTTCCAGGCGATGTCAATTATGGCTTTGAACAATTAGGCTTGGACAACATGGGGGAAGCCACCAGAGGAGGCATTAGTGAAACAACAGATGTGCAGAATGTTCTCCTAAGCCAAGAACAACAAAGTAATGTATACAATGAGAATGCTTCAAATGGTAATGATGATGTTAACAACGAAGATCAAAACAACAATGGGAGAGGAAAAAATATAATAAAATGGGGTAGGCGCGGAAAGAGGGAAAATGTTTTGTGGGTTGACAGTGGTGCGCCAATATGGCCAACGGAGAAGTGTGGAGAATTTTTTTGTTATCTTGGGTATTTGGCCGCTGATGCTGGACTCTACCCTATTGATGTCAAATCCTTTGCTGAATTCAAAATGTGGGACAACCATAATAGGATGTGGGAAAGAGTTAATGGAACTATAGATTGGTCTGTTCCAGAGACTTTGTCTAAACAACACAAGATTAGGAATGAACATGGTGTGGACGACGGTCAATGGATTAAGTTTGTGGACAACTTAGACAGAGTCGAGATGCAGGAAAAGGCTGCAATAAATGTCAATAACAGGAAACAAAAGAAGATTAGACACACAACTAGAACTTTGACTTATGCAGCTAAAATCTATCAATGGGTGAGTTTAAGCTATGATCTTATATCTGATCGTATACAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

227

Amino Acids

26.21

Weight (kDa)

5.33

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26151 FvH4_4g18970
malus_domestica	MD03G1292500.v1.1 MD16G1160800.v1.1
prunus_persica	Prupe.1G128800_v2.0.a1 Prupe.8G265500_v2.0.a1
pyrus_communis	pycom03g23170
rosa_chinensis	RchiOBHm_Chr4g0423871 RchiOBHm_Chr6g0294541
rosa_laevigata	RLG00000007524 RLG00000011861
rosa_multiflora	Rmu_sc0003369.1_g000002 Rmu_sc0004268.1_g000002 Rmu_sc0004268.1_g000005 Rmu_ssc0000248.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173240
rosa_rugosa	Rorug04G0191500 Rorug06G0245900
rosa_samantha	Rh4CG264300 Rh6AG358200
rosa_wichuraiana	Rw4G021500 Rw6G031240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	141, 673
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	237, 333
AcoI	YGGCCR	2 cut(s)	284, 330
AcsI	RAATTY	2 cut(s)	305, 377
AgsI	TTSAA	3 cut(s)	38, 159, 382
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	3 cut(s)	9, 623, 651
AluI	AGCT	3 cut(s)	9, 623, 651
Alw26I	GTCTC	1 cut(s)	443
AoxI	GGCC	2 cut(s)	284, 330
ApeKI	GCWGC	2 cut(s)	554, 620
ApoI	RAATTY	2 cut(s)	305, 377
AspLEI	GCGC	2 cut(s)	237, 277
AsuHPI	GGTGA	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	541, 632
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	3 cut(s)	333, 555, 621
BlsI	GCNGC	3 cut(s)	334, 556, 622
Bme1390I	CCNGG	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	328, 531
BoxI	GACNNNNGTC	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	541, 632
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	286, 332
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	286, 332
Bsp143I	GATC	3 cut(s)	187, 655, 667
BspACI	CCGC	2 cut(s)	237, 333
BspANI	GGCC	2 cut(s)	286, 332
BspFNI	CGCG	1 cut(s)	237
BssMI	GATC	3 cut(s)	187, 655, 667
BssNAI	GTATAC	2 cut(s)	142, 674
Bst1107I	GTATAC	2 cut(s)	142, 674
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	269, 500
BstDEI	CTNAG	2 cut(s)	116, 526
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	237, 277
BstKTI	GATC	3 cut(s)	190, 658, 670
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	187, 655, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 283, 338
BstNI	CCWGG	1 cut(s)	15
BstPAI	GACNNNNGTC	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	541, 632
BstZ17I	GTATAC	2 cut(s)	142, 674
BsuRI	GGCC	2 cut(s)	286, 332
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	274
CfoI	GCGC	2 cut(s)	237, 277
CviAII	CATG	2 cut(s)	58, 485
DdeI	CTNAG	2 cut(s)	116, 526
DpnI	GATC	3 cut(s)	189, 657, 669
DpnII	GATC	3 cut(s)	187, 655, 667
EaeI	YGGCCR	2 cut(s)	284, 330
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	61, 488
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	57, 484
FblI	GTMKAC	2 cut(s)	141, 673
Fnu4HI	GCNGC	3 cut(s)	333, 555, 621
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	333, 555, 621
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	2 cut(s)	236, 276
GluI	GCNGC	3 cut(s)	333, 555, 621
HaeIII	GGCC	2 cut(s)	286, 332
HhaI	GCGC	2 cut(s)	237, 277
Hin1II	CATG	2 cut(s)	61, 488
Hin6I	GCGC	2 cut(s)	235, 275
HinP1I	GCGC	2 cut(s)	235, 275
HincII	GTYRAC	2 cut(s)	178, 265
HindII	GTYRAC	2 cut(s)	178, 265
HinfI	GANTC	2 cut(s)	345, 534
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	6 cut(s)	142, 178, 265, 493, 520, 674
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	2 cut(s)	446, 538
Hpy8I	GTNNAC	6 cut(s)	142, 178, 265, 493, 520, 674
Hpy99I	CGWCG	1 cut(s)	500
HpyCH4III	ACNGT	2 cut(s)	269, 500
HpyCH4V	TGCA	4 cut(s)	103, 544, 557, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 283, 338
HpyF3I	CTNAG	2 cut(s)	116, 526
Hsp92II	CATG	2 cut(s)	61, 488
HspAI	GCGC	2 cut(s)	235, 275
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	187, 655, 667
LpnPI	CCDG	6 cut(s)	27, 85, 327, 459, 530, 559
Lsp1109I	GCAGC	2 cut(s)	541, 632
LweI	GCATC	2 cut(s)	328, 531
MaeI	CTAG	1 cut(s)	603
MalI	GATC	3 cut(s)	189, 657, 669
MboI	GATC	3 cut(s)	187, 655, 667
MboII	GAAGA	2 cut(s)	197, 598
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	4 cut(s)	25, 41, 305, 377
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	339, 543
MnlI	CCTC	4 cut(s)	68, 71, 200, 237
Mox20I	TGGCCA	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	4 cut(s)	177, 420, 510, 647
Msp20I	TGGCCA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	15, 283, 338
NdeII	GATC	3 cut(s)	187, 655, 667
NlaIII	CATG	2 cut(s)	61, 488
PctI	GAATGC	1 cut(s)	157
PflFI	GACNNNGTC	2 cut(s)	454, 533
PkrI	GCNGC	3 cut(s)	334, 556, 622
PleI	GAGTC	2 cut(s)	339, 542
PpsI	GAGTC	2 cut(s)	339, 542
PshAI	GACNNNNGTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PsyI	GACNNNGTC	2 cut(s)	454, 533
SaqAI	TTAA	4 cut(s)	177, 420, 510, 647
SatI	GCNGC	3 cut(s)	333, 555, 621
Sau3AI	GATC	3 cut(s)	187, 655, 667
SchI	GAGTC	2 cut(s)	339, 543
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	3 cut(s)	11, 625, 653
SfaNI	GCATC	2 cut(s)	328, 531
SfcI	CTRYAG	1 cut(s)	429
Sse9I	AATT	4 cut(s)	25, 41, 305, 377
SsiI	CCGC	2 cut(s)	237, 333
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	269, 500
TaqI	TCGA	1 cut(s)	537
TasI	AATT	4 cut(s)	25, 41, 305, 377
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	4 cut(s)	177, 420, 510, 647
Tru9I	TTAA	4 cut(s)	177, 420, 510, 647
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	2 cut(s)	554, 620
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	2 cut(s)	454, 533
XapI	RAATTY	2 cut(s)	305, 377
XmiI	GTMKAC	2 cut(s)	141, 673
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.