Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004268.1

Orthogroup ID

OG0009655

Physical Location & Seq

Genomic Coordinates Forward (+)

10573 .. 11145

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004268.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgggtgtcatcaatttgagccaggagtttactagtccggtagatgcagcaagattgttcaaggccttgatcatcgactcccacaacctcatcccaagactcatgcctcaggccattaagagcatcgaaatcattcagggcgatggaggagcaggaagcatcaaacagatcaattttgctgagggtactcgtttcaagtacatgaagaacagaatagacaccctggatgtagaaaacttgatgtgcaagtacacgctgattgaaggcgatgtattggaggacaagattaagtctattgcttatgaggtgaggtttgtaccttctgcaaatggaggatgtgtttgtaagatgatgagtgagtaccaagctgttggtgactttgagatcaatgaagaagagatcaggggtggcaaggaaagagcaatgggaatgtacaaagtagttgaagcttacctcttcgaaagtcctggtgcttacgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

4.95

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26151 FvH4_4g18970
malus_domestica	MD03G1292500.v1.1 MD16G1160800.v1.1
prunus_persica	Prupe.1G128800_v2.0.a1 Prupe.8G265500_v2.0.a1
pyrus_communis	pycom03g23170
rosa_chinensis	RchiOBHm_Chr4g0423871 RchiOBHm_Chr6g0294541
rosa_laevigata	RLG00000007524 RLG00000011861
rosa_multiflora	Rmu_sc0003369.1_g000002 Rmu_sc0004268.1_g000002 Rmu_sc0004268.1_g000005 Rmu_ssc0000248.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173240
rosa_rugosa	Rorug04G0191500 Rorug06G0245900
rosa_samantha	Rh4CG264300 Rh6AG358200
rosa_wichuraiana	Rw4G021500 Rw6G031240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	6 cut(s)	187, 200, 251, 318, 362, 434
AgsI	TTSAA	4 cut(s)	61, 196, 263, 446
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	3 cut(s)	21, 222, 466
AluBI	AGCT	2 cut(s)	368, 449
AluI	AGCT	2 cut(s)	368, 449
AoxI	GGCC	2 cut(s)	63, 111
ApeKI	GCWGC	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	319, 386
AsuII	TTCGAA	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	3 cut(s)	23, 224, 468
BclI	TGATCA	1 cut(s)	69
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	23, 224, 468
BmrFI	CCNGG	3 cut(s)	23, 224, 468
BmsI	GCATC	3 cut(s)	34, 132, 168
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	23, 224, 468
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	90, 232, 341
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	122, 171
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	65, 113
BsiSI	CCGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	65, 113
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	69, 168, 384, 399
BspANI	GGCC	2 cut(s)	65, 113
BspCNI	CTCAG	2 cut(s)	121, 172
BspT104I	TTCGAA	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	69, 168, 384, 399
Bst2UI	CCWGG	3 cut(s)	23, 224, 468
Bst6I	CTCTTC	2 cut(s)	390, 461
BstAUI	TGTACA	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	108, 180
BstF5I	GGATG	3 cut(s)	90, 232, 341
BstKTI	GATC	4 cut(s)	72, 171, 387, 402
BstMBI	GATC	4 cut(s)	69, 168, 384, 399
BstNI	CCWGG	3 cut(s)	23, 224, 468
BstSCI	CCNGG	3 cut(s)	21, 222, 466
BstV1I	GCAGC	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	371
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	65, 113
BtgZI	GCGATG	2 cut(s)	156, 282
BtsCI	GGATG	3 cut(s)	90, 232, 341
Csp6I	GTAC	6 cut(s)	186, 199, 250, 317, 361, 433
CviAII	CATG	2 cut(s)	103, 202
CviJI	RGCY	5 cut(s)	21, 65, 113, 368, 449
CviKI_1	RGCY	5 cut(s)	21, 65, 113, 368, 449
CviQI	GTAC	6 cut(s)	186, 199, 250, 317, 361, 433
DdeI	CTNAG	2 cut(s)	108, 180
DpnI	GATC	4 cut(s)	71, 170, 386, 401
DpnII	GATC	4 cut(s)	69, 168, 384, 399
Eam1104I	CTCTTC	2 cut(s)	390, 461
EarI	CTCTTC	2 cut(s)	390, 461
Eco147I	AGGCCT	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	21, 222, 466
FaeI	CATG	2 cut(s)	106, 205
FaiI	YATR	3 cut(s)	104, 203, 303
FatI	CATG	2 cut(s)	102, 201
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	77, 239, 348
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	65, 113
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	106, 205
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	2 cut(s)	77, 99
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	319, 386
Hpy166II	GTNNAC	2 cut(s)	30, 252
Hpy8I	GTNNAC	2 cut(s)	30, 252
HpyAV	CCTTC	2 cut(s)	257, 330
HpyCH4V	TGCA	3 cut(s)	47, 246, 326
HpyF3I	CTNAG	2 cut(s)	108, 180
Hsp92II	CATG	2 cut(s)	106, 205
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	69, 168, 384, 399
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	3 cut(s)	34, 132, 168
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	4 cut(s)	71, 170, 386, 401
MboI	GATC	4 cut(s)	69, 168, 384, 399
MboII	GAAGA	4 cut(s)	217, 404, 407, 448
MluCI	AATT	2 cut(s)	13, 172
MlyI	GAGTC	2 cut(s)	71, 93
MnlI	CCTC	9 cut(s)	98, 117, 140, 175, 271, 298, 303, 326, 464
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	2 cut(s)	117, 288
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	23, 224, 468
MvaI	CCWGG	3 cut(s)	23, 224, 468
NdeII	GATC	4 cut(s)	69, 168, 384, 399
NlaIII	CATG	2 cut(s)	106, 205
NmuCI	GTSAC	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	71, 93
PpsI	GAGTC	2 cut(s)	71, 93
Psp6I	CCWGG	3 cut(s)	21, 222, 466
PspGI	CCWGG	3 cut(s)	21, 222, 466
RsaI	GTAC	6 cut(s)	187, 200, 251, 318, 362, 434
RsaNI	GTAC	6 cut(s)	186, 199, 250, 317, 361, 433
SaqAI	TTAA	2 cut(s)	117, 288
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	4 cut(s)	69, 168, 384, 399
SchI	GAGTC	2 cut(s)	71, 93
ScrFI	CCNGG	3 cut(s)	23, 224, 468
SetI	ASST	7 cut(s)	90, 309, 314, 322, 370, 451, 456
SfaNI	GCATC	3 cut(s)	34, 132, 168
SfuI	TTCGAA	1 cut(s)	459
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	2 cut(s)	13, 172
SseBI	AGGCCT	1 cut(s)	65
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	21, 222, 466
TaqI	TCGA	3 cut(s)	75, 126, 459
TasI	AATT	2 cut(s)	13, 172
TatI	WGTACW	3 cut(s)	198, 249, 432
Tru1I	TTAA	2 cut(s)	117, 288
Tru9I	TTAA	2 cut(s)	117, 288
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	218, 405
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.