RLG00000007524

Major allergen Pru ar 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009655
Physical Location & Seq
Forward (+)
17840456 .. 17841192
737 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007524

Sequence Viewer

Length: 486 bp
ATGGGGTTGACCACCTATACAGATGAGTACACTTCCCCAATCCCTCCATGCAGGTTGTTCAAGGCATTGGTCCTTGAGGCTGACATCCTCATTCCAAAGCTCATGCCGGAGGCTCTTAAGAGCATCGACACCATCCAAGGTGACGGAAGAGCAGGAAGCATCAAGCAGATTAACTTCGCCGAAGGTAGCCAAATCATTTCTGTGCGAAATCGGGTTGATGAGGTGGATGACGAGAACTATGTGTATAATTACACTTTGATTGATGGAGATATTTCAGTAATGGAGAAACTTGAGTTTATTTCTTATGAAGTTAAGTTTGAGGCTACACCAGAAGGTGGCAGTAAGAACAAGATGGTGAGCAAGTACCACACCAAAGGTGACATTGTGCTCAATGAGGAAGACATAAAGGCTGGCAGAGAAAAGGCCTTGGGGATGTACAAGGTTGTGGAAGCCTACCTCCTCCAAAACCCAGATGTCTATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

162

Amino Acids

18.1

Weight (kDa)

4.67

Isoelectric Point (pI)

20.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 156 3.6e-20 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 335
AfaI GTAC 3 cut(s) 29, 365, 437
AfiI CCNNNNNNNGG 1 cut(s) 335
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 390
AoxI GGCC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 152, 367, 389
AvaII GGWCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 390
BccI CCATC 3 cut(s) 140, 257, 346
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 132, 168
BpiI GAAGAC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 95, 311
BsaJI CCNNGG 2 cut(s) 136, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 136, 426
BseGI GGATG 4 cut(s) 84, 132, 232, 438
BseLI CCNNNNNNNGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 449
BshFI GGCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 335
BsnI GGCC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 435
BspANI GGCC 1 cut(s) 425
BspMI ACCTGC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 136, 426
BssT1I CCWWGG 2 cut(s) 136, 426
Bst6I CTCTTC 1 cut(s) 142
BstAFI CTTAAG 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 412
BstF5I GGATG 4 cut(s) 84, 132, 232, 438
BstV2I GAAGAC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 425
BtsCI GGATG 4 cut(s) 84, 132, 232, 438
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 28, 364, 436
CviAII CATG 2 cut(s) 48, 103
CviJI RGCY 8 cut(s) 80, 100, 113, 189, 323, 410, 425, 452
CviKI_1 RGCY 8 cut(s) 80, 100, 113, 189, 323, 410, 425, 452
CviQI GTAC 3 cut(s) 28, 364, 436
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 136, 426
Eco147I AGGCCT 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 136, 426
ErhI CCWWGG 2 cut(s) 136, 426
FaeI CATG 2 cut(s) 51, 106
FaiI YATR 8 cut(s) 18, 49, 104, 240, 246, 306, 404, 480
FatI CATG 2 cut(s) 47, 102
FokI GGATG 4 cut(s) 71, 119, 239, 445
HaeIII GGCC 1 cut(s) 425
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 51, 106
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HpaII CCGG 1 cut(s) 107
HphI GGTGA 3 cut(s) 152, 367, 389
Hpy166II GTNNAC 2 cut(s) 9, 30
Hpy8I GTNNAC 2 cut(s) 9, 30
HpyAV CCTTC 2 cut(s) 176, 326
HpyCH4V TGCA 1 cut(s) 51
Hsp92II CATG 2 cut(s) 51, 106
LguI GCTCTTC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 37, 120, 138, 342, 396
LweI GCATC 2 cut(s) 132, 168
MaeIII GTNAC 2 cut(s) 140, 377
MboII GAAGA 2 cut(s) 159, 410
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 1 cut(s) 247
MnlI CCTC 9 cut(s) 54, 70, 98, 103, 214, 313, 388, 467, 470
MseI TTAA 3 cut(s) 117, 171, 312
MslI CAYNNNNRTG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 1 cut(s) 107
NlaIII CATG 2 cut(s) 51, 106
NmuCI GTSAC 2 cut(s) 140, 377
PceI AGGCCT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 335
PspPI GGNCC 1 cut(s) 70
RsaI GTAC 3 cut(s) 29, 365, 437
RsaNI GTAC 3 cut(s) 28, 364, 436
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 3 cut(s) 117, 171, 312
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 2 cut(s) 132, 168
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 3 cut(s) 74, 116, 290
SmoI CTYRAG 3 cut(s) 74, 116, 290
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 425
StuI AGGCCT 1 cut(s) 425
StyI CCWWGG 2 cut(s) 136, 426
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 247
TatI WGTACW 2 cut(s) 27, 435
Tru1I TTAA 3 cut(s) 117, 171, 312
Tru9I TTAA 3 cut(s) 117, 171, 312
TseFI GTSAC 2 cut(s) 140, 377
Tsp45I GTSAC 2 cut(s) 140, 377
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.