Prupe.1G143500_v2.0.a1

Regulator of Ty1 transposition protein 107 BRCT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007475
Physical Location & Seq
Forward (+)
11306589 .. 11313846
7258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G143500.4

Sequence Viewer

Length: 3735 bp
ATGGGTTCTCTTTGGGACGAAAACGATGAAATCAAGCCAATGGAAACAAACCCAGTTGTCGATTGTGCCCATACCCAGCCCATTGATAGTCAGATTTCAAGTCCTCCATCTCCTGATGAAAAGGCCAAATTTGAGGATGCTCATGAGATAGTGCAAGATACTGTGCCTTTTGATGATACTGTTCTAGTTGAAGATGCATTCGAAACTCAAGTGCTTAATCTTGCTGGCGAAACCCAAGTAATGGATTTTGGTGCTGAAACCCAAGTAATGGATTTCGGTGGCGAAACCCAAGTAATGGATTTCGGTGGCGAAACCCAGGTCATGGATTTTGGTGGTGAGACCCAAGTATTAGATGATATAAACTGTGTAGAGAACATGGAAACTCAGTTATTAGAGTTTGAAGATGAAGTTGTCAGTGACACTGACAGTGAAGAGTCGGATACAACTGAAGTTTTTGATGATAACAAGCATCTAACTCATGATGAATCAGTAAGAAGAGGTTCTGGTCAAGTAGTGAATGAGGAGAAGATTTGCTGCACTCCTTTTGAAAATAATGTAAAGGGGTTAATGGAGCAAGCCAATAATTCGATCCATGAGAAACAAAATGCAGGGCTCCATGTTTCTACAGAAACACCTGTGGATAAAAGCTCCCCGGAACTGAAACCCGGATCTGTGCATATGCATTTCACCTCAGTCCGTGCCGCATCCTTGCGGGCCTCTGGTCTAGCAGCTCGCTTGAAGGGCACAAATAGTGAGTCTCCTTCTGTTCCAAGTAATAGTCAGTGTTTGGAGCCACTTTCTGGGAAGGATAATGCAGTATCTCTTTTATGGGGTTCCACCATAGGTGGGGAGAAAGTCAACCAGGAACATGATATGGGGAGATGTAATGAGAAAATAAGGAGGTCAACGAATGAGAACAATTGCAGGATTGGTAACTCAACAGCGAGAAAACTTTTTAATGAGGATTCAGATGATGAAGAAAAGGGATTTCCTCATAACAGCAGTAGTGGTGAAGAAGGAGAAGGCTTGCTTCAGTTTCCTTGTAATTTGGCAGGGTTGAGCTATATTGACTCTCAAGAACCTGGTGAATTATCACAGGCTAATGCCCTTGATTTTGTGGATAAGTTCCTCCAAGTTAATGTTGAGGAGTTTGATAAAGAAGTTGACCGTGGAACGTGTGCTGGGGAAAATTCAAAATTTGTCTCAAGTGCAAAAGGGCCACAAAGATTGGCCAAGAAAGCCATTGATAAAAGCATAGTTCAAAATGTAGGCATTTTTGATTGGGATGACAGCCGGGAGAATGAAGAGGGAGGTGATTTTTTCTGCCGGAGAAAGACAGACTTCTTTGGTGGTGGAAGCCATGGCTGGAGATCTCTTCCCCAAGCCCAGAAGTCCAAAGGGAACAGACAGGAGGGCCAGAAGGATCACAAAAAACAAGTACAGGGAAAGAAGAAGAAAATGGGTGTAATTCATTCAGATTCAAAACTATTGTTGCATAATTCAAAATTCGACAAGAAGACAGAACATGAAGATGAAATCAAACATAAAAAGAATCTCGCTAGTGAGTTTGACAAGCAGTTTGACATCAACTCCCCTAGAGGACAGTTGGATGCTAATGTCAAAAAGAACAATGATCCTGAAATGCTAGATGTAGGTATTGATACTCAAATGGCAGCTGAAGCTATAGAAGCATTATTTAATGGTGAAGGAATTTCCAATTGTGATGCTATTAGTGCACTTCCAGATGTTCAAGGAAATCCAAAAAGTTCTCCTGAAGGTTCCATGGGTGAAAAAACAAAGAATACACTTTCTTCAAAGAAACCCTCTTCTCGGAAAAGAGTACTTCTGTCTGATGCAGGGGTTGCTTCTCGAGAATCTCGACAAGCCAAGAAAACTAGGATTGGTGCCAAATCTGGGAAACATTTTTCAATTTCATCTCCAGAATATTCTAAGACTGCCAGGAAGAAGTGTGAAACAGAGTTGGTGATAACAAAATCAAAGAAGGCCAAGTCAAATGCTAAAAAGCACCTTAACATCAATGGGAACAAAAGCTTGGAGAAAATACCTTCTGTCGCTATTGACCTGAGAACAGAAGGATCTATAAAAAGGCATTTACCAGATGTTGGTAATTTTGTACCCGTTGGACGTCAGACTAGACAGTCTATGGTGGTAAATCAGTTACAGAAAGCTGACAAAGTATCAAGTGATTGTGGAGAAGAGTCGAGCTATCAGACACAGAATGTTGCAATTAGGGAAAAAATAATTAGTTTTACAGGTGTTCAGAAGTCTAAAGTGCTAAATGCAAAATCTTCAAAACTAGGTTCCAATAAAACTGGAAAAGTTGGAAATACCAAACCAAGCCAACAGGAGGAGTCAGATTTCAAGTTCGAAGCAGTTAGTAATGGTATTAAATTGGATGTGTTAAACTTTCCCAAAAGAAGAAGATCTCGGCGAAATATGTCCATTCAGGTTTATGGACCCAATAACTCAGATGGTCCATCTGAGCCATCTGTTCAGGCAGACAAAATTGGACAACGTGTCAATAGCCACAAAAGGTTGCAGAGTGGTGCGAAAAACATTTGCAATGATATAAAGTTGACAAGGAGGACGCGATCATCTACATGTGGAGACCAGAATTTGGATGGAAAGTTTGCTCGAGAAATTTTAAAAGGAGGTCCTGGGGAAGCTCCCCTTCATTGTAATTCTTCTCATAAGGATGGGAGAATGATATCAGAGATTATAACTGGCAAGAGGGTAGTTGGGATCTCTGACAGGAAGAGTGATGCAAATTGCTCTTCTGCTACTAAAATGTCGGACGAATTCCCAAGAGAAAACTGTAAACCATCTGATTCATCATGTACTACTCCAGTTAACAATAAGGTGCCTGTCAATGCTGCATCTCCCGTTTGTATGGGCAATGAATATTTCAAACAGACATGCAAGAGGAGGCTGTTAGGGTCAAGTCTTTTGAAAGAAATCCGTGGCCTAAGTGCAACTGTGTGTGAACCAACTTCAACACCAGAGTTAAGAAAGAGGAGAGATATGACTGATGTTCGAGTATTGTATAGTCACCACTTGGATGAGGATATAATTAAGAAGCAGAAAAAGATTTTGGCCCGACTAGGAGTTTCTGTAGCATTGTCTATGACAGATGCCACACACTTCATAGCAGATCAATTCGTGCGTACGAGAAATATGTTAGAAGCTATTGCTTTTGGGAAACCAGTGGTGACACATTTATGGCTCGAGAGCTGTGGACAAGCTGGCTGTTTCGTTGATGAGAAAAGTCATATACTAAGGGATAATAAAAAGGAGAAGGAGTTTGGATTTAGCATGCCGGCATCATTAGCACGTGCATGCCAGCATCCACTTTTACAGGACCGTAAAGTCTTCATCACCCCAAATACAAAGCCTGGTAAAGAAATAATTTCAAATTTGGTCAAAGCAGTCAAGGGCCAGGCTGTGGAGAGAATTGGTAGATCAACTCTGAACGCTGATAAAATTCCAGATGATCTATTGGTTCTATCTTGTGAGGAAGATTATGAAATATGCGTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACAGTTCAGAGCTACTATTGAATGGGATTGTTACTCAGAAGCTGGAGTTTGAAAGGCATCTCCTCTTTTCCGATCAAGTTAAGAAAACCCGTTCTACCATATGGTTGAAGAAAGATGGCAATAAGTTCCTGCCTGTAACAAAAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

1245

Amino Acids

137.36

Weight (kDa)

6.78

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2741
AasI GACNNNNNNGTC 2 cut(s) 2158, 3386
AatII GACGTC 1 cut(s) 2149
AccB1I GGYRCC 2 cut(s) 1904, 2881
AccB7I CCANNNNNTGG 8 cut(s) 241, 268, 295, 322, 800, 2123, 2638, 3463
AccII CGCG 1 cut(s) 2611
AciI CCGC 2 cut(s) 702, 712
AclWI GGATC 6 cut(s) 583, 676, 1431, 1628, 2104, 2771
AcoI YGGCCR 1 cut(s) 1230
AcuI CTGAAG 4 cut(s) 468, 1016, 1698, 1794
AcvI CACGTG 1 cut(s) 3353
AcyI GRCGYC 1 cut(s) 2146
AfaI GTAC 5 cut(s) 1440, 1842, 2136, 2860, 3187
AflIII ACRYGT 3 cut(s) 1175, 2536, 2621
AhdI GACNNNNNGTC 1 cut(s) 2537
AjnI CCWGG 7 cut(s) 315, 861, 1081, 1958, 2677, 3412, 3456
AjuI GAANNNNNNNTTGG 4 cut(s) 2036, 2068, 3095, 3127
Alw21I GWGCWC 1 cut(s) 1738
Alw26I GTCTC 4 cut(s) 332, 762, 1207, 2622
Alw44I GTGCAC 1 cut(s) 1734
AlwI GGATC 6 cut(s) 583, 676, 1431, 1628, 2104, 2771
AlwNI CAGNNNCTG 1 cut(s) 3625
Ama87I CYCGRG 3 cut(s) 1869, 2655, 3245
AoxI GGCC 9 cut(s) 123, 714, 1217, 1230, 1414, 2004, 2983, 3114, 3454
ApaLI GTGCAC 1 cut(s) 1734
ApeKI GCWGC 5 cut(s) 534, 728, 1673, 2894, 3575
ArsI GACNNNNNNTTYG 6 cut(s) 303, 335, 740, 772, 1562, 1594
Asp700I GAANNNNTTC 1 cut(s) 499
AspS9I GGNCC 9 cut(s) 714, 1217, 1414, 2477, 2495, 2675, 3115, 3379, 3454
AsuC2I CCSGG 3 cut(s) 653, 666, 1295
AsuII TTCGAA 2 cut(s) 201, 2388
AvaI CYCGRG 3 cut(s) 1869, 2655, 3245
AvaII GGWCC 4 cut(s) 2477, 2495, 2675, 3379
BaeGI GKGCMC 3 cut(s) 70, 746, 1738
BalI TGGCCA 1 cut(s) 1232
BanI GGYRCC 2 cut(s) 1904, 2881
BanII GRGCYC 1 cut(s) 615
BbrPI CACGTG 1 cut(s) 3353
BbsI GAAGAC 2 cut(s) 1523, 3382
Bbv12I GWGCWC 1 cut(s) 1738
BbvI GCAGC 5 cut(s) 521, 740, 1685, 2881, 3562
BccI CCATC 8 cut(s) 115, 2486, 2506, 2515, 2636, 2711, 2851, 3692
BciT130I CCWGG 7 cut(s) 317, 863, 1083, 1960, 2679, 3414, 3458
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 3 cut(s) 653, 666, 1295
BcoDI GTCTC 4 cut(s) 332, 762, 1207, 2622
BfaI CTAG 9 cut(s) 185, 725, 1560, 1596, 1646, 1896, 2154, 2318, 3122
BfmI CTRYAG 4 cut(s) 624, 1683, 3132, 3576
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 2 cut(s) 1370, 2444
BisI GCNGC 6 cut(s) 535, 702, 729, 1674, 2895, 3576
BlsI GCNGC 6 cut(s) 536, 703, 730, 1675, 2896, 3577
BmcAI AGTACT 1 cut(s) 1842
Bme18I GGWCC 4 cut(s) 2477, 2495, 2675, 3379
BmeRI GACNNNNNGTC 1 cut(s) 2537
BmeT110I CYCGRG 3 cut(s) 1869, 2655, 3245
BmgT120I GGNCC 9 cut(s) 714, 1217, 1414, 2477, 2495, 2675, 3115, 3379, 3454
BmiI GGNNCC 8 cut(s) 614, 792, 835, 1780, 1906, 2323, 2479, 2883
BmrI ACTGGG 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 1523, 3382
BpmI CTGGAG 4 cut(s) 1387, 1923, 2850, 3647
Bpu14I TTCGAA 2 cut(s) 201, 2388
BpuEI CTTGAG 3 cut(s) 192, 1059, 1189
BpuMI CCSGG 3 cut(s) 653, 666, 1295
BsaAI YACGTR 1 cut(s) 3353
BsaHI GRCGYC 1 cut(s) 2146
BsaI GGTCTC 2 cut(s) 332, 2622
BsaJI CCNNGG 7 cut(s) 315, 651, 1168, 1360, 1782, 2678, 2980
BsaXI ACNNNNNCTCC 8 cut(s) 1574, 1604, 3117, 3147, 3305, 3335, 3564, 3594
Bse118I RCCGGY 1 cut(s) 3337
Bse1I ACTGG 5 cut(s) 53, 2338, 2749, 2867, 3224
Bse3DI GCAATG 2 cut(s) 2590, 2923
BseBI CCWGG 7 cut(s) 317, 863, 1083, 1960, 2679, 3414, 3458
BseDI CCNNGG 7 cut(s) 315, 651, 1168, 1360, 1782, 2678, 2980
BseGI GGATG 9 cut(s) 142, 704, 1291, 1615, 2422, 2647, 2722, 3085, 3364
BseMI GCAATG 2 cut(s) 2590, 2923
BseMII CTCAG 6 cut(s) 398, 705, 2075, 2493, 2502, 3632
BseNI ACTGG 5 cut(s) 53, 2338, 2749, 2867, 3224
BseRI GAGGAG 6 cut(s) 536, 1160, 2384, 2959, 3049, 3635
BseSI GKGCMC 3 cut(s) 70, 746, 1738
BseXI GCAGC 5 cut(s) 521, 740, 1685, 2881, 3562
BseYI CCCAGC 2 cut(s) 75, 1181
BsgI GTGCAG 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 2611
BshFI GGCC 9 cut(s) 125, 716, 1219, 1232, 1416, 2006, 2985, 3116, 3456
BshNI GGYRCC 2 cut(s) 1904, 2881
BsiHKAI GWGCWC 1 cut(s) 1738
BsiHKCI CYCGRG 3 cut(s) 1869, 2655, 3245
BsiSI CCGG 5 cut(s) 653, 666, 1294, 1327, 3338
BsiWI CGTACG 1 cut(s) 3185
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 4 cut(s) 332, 762, 1207, 2622
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 9 cut(s) 125, 716, 1219, 1232, 1416, 2006, 2985, 3116, 3456
Bso31I GGTCTC 2 cut(s) 332, 2622
BsoBI CYCGRG 3 cut(s) 1869, 2655, 3245
Bsp119I TTCGAA 2 cut(s) 201, 2388
Bsp1286I GDGCHC 4 cut(s) 70, 615, 746, 1738
Bsp19I CCATGG 2 cut(s) 1360, 1782
BspACI CCGC 2 cut(s) 702, 712
BspANI GGCC 9 cut(s) 125, 716, 1219, 1232, 1416, 2006, 2985, 3116, 3456
BspCNI CTCAG 6 cut(s) 397, 704, 2076, 2494, 2501, 3631
BspFNI CGCG 1 cut(s) 2611
BspHI TCATGA 2 cut(s) 142, 478
BspLI GGNNCC 8 cut(s) 614, 792, 835, 1780, 1906, 2323, 2479, 2883
BspMAI CTGCAG 1 cut(s) 3580
BspPI GGATC 6 cut(s) 583, 676, 1431, 1628, 2104, 2771
BspQI GCTCTTC 1 cut(s) 2800
BspT104I TTCGAA 2 cut(s) 201, 2388
BspT107I GGYRCC 2 cut(s) 1904, 2881
BspTNI GGTCTC 2 cut(s) 332, 2622
BsrDI GCAATG 2 cut(s) 2590, 2923
BsrFI RCCGGY 1 cut(s) 3337
BsrI ACTGG 5 cut(s) 53, 2338, 2749, 2867, 3224
BssAI RCCGGY 1 cut(s) 3337
BssECI CCNNGG 7 cut(s) 315, 651, 1168, 1360, 1782, 2678, 2980
BssNI GRCGYC 1 cut(s) 2146
BssT1I CCWWGG 2 cut(s) 1360, 1782
Bst2UI CCWGG 7 cut(s) 317, 863, 1083, 1960, 2679, 3414, 3458
Bst6I CTCTTC 8 cut(s) 426, 490, 1299, 1380, 1831, 2211, 2771, 2800
BstACI GRCGYC 1 cut(s) 2146
BstAPI GCANNNNNTGC 1 cut(s) 1862
BstBAI YACGTR 1 cut(s) 3353
BstBI TTCGAA 2 cut(s) 201, 2388
BstDEI CTNAG 9 cut(s) 384, 691, 1950, 2084, 2488, 2502, 2987, 3296, 3618
BstDSI CCRYGG 4 cut(s) 1168, 1360, 1782, 2980
BstF5I GGATG 9 cut(s) 142, 704, 1291, 1615, 2422, 2647, 2722, 3085, 3364
BstFNI CGCG 1 cut(s) 2611
BstMAI GTCTC 4 cut(s) 332, 762, 1207, 2622
BstMWI GCNNNNNNNGC 7 cut(s) 741, 1238, 1679, 1688, 1733, 1862, 3347
BstNI CCWGG 7 cut(s) 317, 863, 1083, 1960, 2679, 3414, 3458
BstNSI RCATGY 4 cut(s) 2625, 2940, 3337, 3360
BstSFI CTRYAG 4 cut(s) 624, 1683, 3132, 3576
BstSLI GKGCMC 3 cut(s) 70, 746, 1738
BstUI CGCG 1 cut(s) 2611
BstV1I GCAGC 5 cut(s) 521, 740, 1685, 2881, 3562
BstV2I GAAGAC 2 cut(s) 1523, 3382
BstX2I RGATCY 5 cut(s) 668, 1370, 2096, 2444, 2763
BstYI RGATCY 5 cut(s) 668, 1370, 2096, 2444, 2763
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 9 cut(s) 125, 716, 1219, 1232, 1416, 2006, 2985, 3116, 3456
BtgI CCRYGG 4 cut(s) 1168, 1360, 1782, 2980
BtsCI GGATG 9 cut(s) 142, 704, 1291, 1615, 2422, 2647, 2722, 3085, 3364
BtsIMutI CAGTG 5 cut(s) 420, 421, 433, 788, 3231
CaiI CAGNNNCTG 1 cut(s) 3625
CciI TCATGA 2 cut(s) 142, 478
Cfr10I RCCGGY 1 cut(s) 3337
Cfr13I GGNCC 9 cut(s) 714, 1217, 1414, 2477, 2495, 2675, 3115, 3379, 3454
CseI GACGC 1 cut(s) 2617
CsiI ACCWGGT 1 cut(s) 1081
Csp6I GTAC 5 cut(s) 1439, 1841, 2135, 2859, 3186
CspCI CAANNNNNGTGG 2 cut(s) 1209, 1244
CviQI GTAC 5 cut(s) 1439, 1841, 2135, 2859, 3186
DdeI CTNAG 9 cut(s) 384, 691, 1950, 2084, 2488, 2502, 2987, 3296, 3618
DraI TTTAAA 1 cut(s) 2667
DrdI GACNNNNNNGTC 2 cut(s) 2158, 3386
DriI GACNNNNNGTC 1 cut(s) 2537
DseDI GACNNNNNNGTC 2 cut(s) 2158, 3386
EaeI YGGCCR 1 cut(s) 1230
Eam1104I CTCTTC 8 cut(s) 426, 490, 1299, 1380, 1831, 2211, 2771, 2800
Eam1105I GACNNNNNGTC 1 cut(s) 2537
EarI CTCTTC 8 cut(s) 426, 490, 1299, 1380, 1831, 2211, 2771, 2800
Eco130I CCWWGG 2 cut(s) 1360, 1782
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 2 cut(s) 332, 2622
Eco32I GATATC 1 cut(s) 2730
Eco47I GGWCC 4 cut(s) 2477, 2495, 2675, 3379
Eco57I CTGAAG 4 cut(s) 468, 1016, 1698, 1794
Eco72I CACGTG 1 cut(s) 3353
Eco88I CYCGRG 3 cut(s) 1869, 2655, 3245
EcoO109I RGGNCCY 1 cut(s) 2675
EcoRI GAATTC 1 cut(s) 2819
EcoRII CCWGG 7 cut(s) 315, 861, 1081, 1958, 2677, 3412, 3456
EcoRV GATATC 1 cut(s) 2730
EcoT14I CCWWGG 2 cut(s) 1360, 1782
EcoT22I ATGCAT 2 cut(s) 199, 684
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 2 cut(s) 1360, 1782
FalI AAGNNNNNCTT 6 cut(s) 1014, 1046, 1325, 1357, 2676, 2708
FaqI GGGAC 1 cut(s) 29
FauI CCCGC 1 cut(s) 705
FauNDI CATATG 2 cut(s) 678, 3683
Fnu4HI GCNGC 6 cut(s) 535, 702, 729, 1674, 2895, 3576
FokI GGATG 9 cut(s) 149, 691, 1298, 1622, 2429, 2654, 2729, 3092, 3351
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 6 cut(s) 535, 702, 729, 1674, 2895, 3576
FspBI CTAG 9 cut(s) 185, 725, 1560, 1596, 1646, 1896, 2154, 2318, 3122
GluI GCNGC 6 cut(s) 535, 702, 729, 1674, 2895, 3576
GsaI CCCAGC 2 cut(s) 79, 1185
GsuI CTGGAG 4 cut(s) 1387, 1923, 2850, 3647
HaeIII GGCC 9 cut(s) 125, 716, 1219, 1232, 1416, 2006, 2985, 3116, 3456
HapII CCGG 5 cut(s) 653, 666, 1294, 1327, 3338
HgaI GACGC 1 cut(s) 2617
Hin1I GRCGYC 1 cut(s) 2146
HincII GTYRAC 5 cut(s) 859, 906, 1165, 2598, 2872
HindII GTYRAC 5 cut(s) 859, 906, 1165, 2598, 2872
HindIII AAGCTT 1 cut(s) 2050
HpaI GTTAAC 1 cut(s) 2872
HpaII CCGG 5 cut(s) 653, 666, 1294, 1327, 3338
HpyCH4IV ACGT 4 cut(s) 1175, 2146, 2536, 3352
HpyF10VI GCNNNNNNNGC 7 cut(s) 741, 1238, 1679, 1688, 1733, 1862, 3347
HpyF3I CTNAG 9 cut(s) 384, 691, 1950, 2084, 2488, 2502, 2987, 3296, 3618
HpySE526I ACGT 4 cut(s) 1175, 2146, 2536, 3352
Hsp92I GRCGYC 1 cut(s) 2146
KroI GCCGGC 1 cut(s) 3337
KroNI GCCGGC 1 cut(s) 3339
KspAI GTTAAC 1 cut(s) 2872
LguI GCTCTTC 1 cut(s) 2800
LmnI GCTCC 6 cut(s) 571, 618, 653, 790, 2692, 3572
Lsp1109I GCAGC 5 cut(s) 521, 740, 1685, 2881, 3562
MabI ACCWGGT 1 cut(s) 1081
MaeI CTAG 9 cut(s) 185, 725, 1560, 1596, 1646, 1896, 2154, 2318, 3122
MaeII ACGT 4 cut(s) 1175, 2146, 2536, 3352
MaeIII GTNAC 7 cut(s) 416, 932, 2178, 3068, 3229, 3613, 3718
MfeI CAATTG 2 cut(s) 919, 1717
MflI RGATCY 5 cut(s) 668, 1370, 2096, 2444, 2763
MhlI GDGCHC 4 cut(s) 70, 615, 746, 1738
MlsI TGGCCA 1 cut(s) 1232
MluNI TGGCCA 1 cut(s) 1232
MlyI GAGTC 5 cut(s) 443, 764, 1064, 2228, 2381
MmeI TCCRAC 5 cut(s) 417, 1587, 2122, 2323, 2793
Mox20I TGGCCA 1 cut(s) 1232
Mph1103I ATGCAT 2 cut(s) 199, 684
MroNI GCCGGC 1 cut(s) 3337
MroXI GAANNNNTTC 1 cut(s) 499
MscI TGGCCA 1 cut(s) 1232
MslI CAYNNNNRTG 6 cut(s) 1530, 2620, 2715, 3078, 3238, 3355
Msp20I TGGCCA 1 cut(s) 1232
MspA1I CMGCKG 1 cut(s) 1676
MspI CCGG 5 cut(s) 653, 666, 1294, 1327, 3338
MunI CAATTG 2 cut(s) 919, 1717
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 7 cut(s) 317, 863, 1083, 1960, 2679, 3414, 3458
MvnI CGCG 1 cut(s) 2611
MwoI GCNNNNNNNGC 7 cut(s) 741, 1238, 1679, 1688, 1733, 1862, 3347
NaeI GCCGGC 1 cut(s) 3339
NciI CCSGG 3 cut(s) 653, 666, 1295
NcoI CCATGG 2 cut(s) 1360, 1782
NdeI CATATG 2 cut(s) 678, 3683
NgoMIV GCCGGC 1 cut(s) 3337
NlaIV GGNNCC 8 cut(s) 614, 792, 835, 1780, 1906, 2323, 2479, 2883
NmeAIII GCCGAG 1 cut(s) 2428
NmuCI GTSAC 3 cut(s) 416, 3068, 3229
NsiI ATGCAT 2 cut(s) 199, 684
NspI RCATGY 4 cut(s) 2625, 2940, 3337, 3360
NspV TTCGAA 2 cut(s) 201, 2388
PaeI GCATGC 2 cut(s) 3337, 3360
PaeR7I CTCGAG 3 cut(s) 1869, 2655, 3245
PagI TCATGA 2 cut(s) 142, 478
PciI ACATGT 1 cut(s) 2621
PciSI GCTCTTC 1 cut(s) 2800
PcsI WCGNNNNNNNCGW 1 cut(s) 1876
PctI GAATGC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 3339
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 6 cut(s) 485, 965, 1478, 1552, 1874, 2849
Pfl23II CGTACG 1 cut(s) 3185
PflMI CCANNNNNTGG 8 cut(s) 241, 268, 295, 322, 800, 2123, 2638, 3463
PkrI GCNGC 6 cut(s) 536, 703, 730, 1675, 2896, 3577
PleI GAGTC 5 cut(s) 442, 763, 1064, 2227, 2380
PmaCI CACGTG 1 cut(s) 3353
PmlI CACGTG 1 cut(s) 3353
PpsI GAGTC 5 cut(s) 442, 763, 1064, 2227, 2380
Ppu21I YACGTR 1 cut(s) 3353
PpuMI RGGWCCY 1 cut(s) 2675
PscI ACATGT 1 cut(s) 2621
PsiI TTATAA 1 cut(s) 2741
Psp5II RGGWCCY 1 cut(s) 2675
Psp6I CCWGG 7 cut(s) 315, 861, 1081, 1958, 2677, 3412, 3456
PspCI CACGTG 1 cut(s) 3353
PspFI CCCAGC 2 cut(s) 75, 1181
PspGI CCWGG 7 cut(s) 315, 861, 1081, 1958, 2677, 3412, 3456
PspLI CGTACG 1 cut(s) 3185
PspN4I GGNNCC 8 cut(s) 614, 792, 835, 1780, 1906, 2323, 2479, 2883
PspPI GGNCC 9 cut(s) 714, 1217, 1414, 2477, 2495, 2675, 3115, 3379, 3454
PspPPI RGGWCCY 1 cut(s) 2675
PstI CTGCAG 1 cut(s) 3580
PstNI CAGNNNCTG 1 cut(s) 3625
PsuI RGATCY 5 cut(s) 668, 1370, 2096, 2444, 2763
PvuII CAGCTG 1 cut(s) 1676
RsaI GTAC 5 cut(s) 1440, 1842, 2136, 2860, 3187
RsaNI GTAC 5 cut(s) 1439, 1841, 2135, 2859, 3186
RseI CAYNNNNRTG 6 cut(s) 1530, 2620, 2715, 3078, 3238, 3355
SapI GCTCTTC 1 cut(s) 2800
SatI GCNGC 6 cut(s) 535, 702, 729, 1674, 2895, 3576
Sau96I GGNCC 9 cut(s) 714, 1217, 1414, 2477, 2495, 2675, 3115, 3379, 3454
ScaI AGTACT 1 cut(s) 1842
SchI GAGTC 5 cut(s) 443, 764, 1064, 2228, 2381
SduI GDGCHC 4 cut(s) 70, 615, 746, 1738
SexAI ACCWGGT 1 cut(s) 1081
SfcI CTRYAG 4 cut(s) 624, 1683, 3132, 3576
Sfr274I CTCGAG 3 cut(s) 1869, 2655, 3245
SfuI TTCGAA 2 cut(s) 201, 2388
SinI GGWCC 4 cut(s) 2477, 2495, 2675, 3379
SlaI CTCGAG 3 cut(s) 1869, 2655, 3245
SmiMI CAYNNNNRTG 6 cut(s) 1530, 2620, 2715, 3078, 3238, 3355
SmlI CTYRAG 6 cut(s) 207, 1074, 1204, 1869, 2655, 3245
SmoI CTYRAG 6 cut(s) 207, 1074, 1204, 1869, 2655, 3245
SphI GCATGC 2 cut(s) 3337, 3360
SsiI CCGC 2 cut(s) 702, 712
SspI AATATT 2 cut(s) 1946, 2924
SspMI CTAG 9 cut(s) 185, 725, 1560, 1596, 1646, 1896, 2154, 2318, 3122
StyI CCWWGG 2 cut(s) 1360, 1782
TaiI ACGT 4 cut(s) 1178, 2149, 2539, 3355
TatI WGTACW 3 cut(s) 1438, 1840, 2858
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 6 cut(s) 485, 965, 1478, 1552, 1874, 2849
TscAI CASTG 5 cut(s) 421, 427, 433, 788, 3231
TseFI GTSAC 3 cut(s) 416, 3068, 3229
TseI GCWGC 5 cut(s) 534, 728, 1673, 2894, 3575
Tsp45I GTSAC 3 cut(s) 416, 3068, 3229
TspGWI ACGGA 2 cut(s) 686, 2969
TspRI CASTG 5 cut(s) 421, 427, 433, 788, 3231
Van91I CCANNNNNTGG 8 cut(s) 241, 268, 295, 322, 800, 2123, 2638, 3463
VneI GTGCAC 1 cut(s) 1734
VpaK11BI GGWCC 4 cut(s) 2477, 2495, 2675, 3379
XceI RCATGY 4 cut(s) 2625, 2940, 3337, 3360
XcmI CCANNNNNNNNNTGG 1 cut(s) 2639
XhoI CTCGAG 3 cut(s) 1869, 2655, 3245
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 9 cut(s) 185, 725, 1560, 1596, 1646, 1896, 2154, 2318, 3122
ZraI GACGTC 1 cut(s) 2147
ZrmI AGTACT 1 cut(s) 1842
Zsp2I ATGCAT 2 cut(s) 199, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.