Rroxscaffold_5G00363220

Regulator of Ty1 transposition protein 107 BRCT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007475
Physical Location & Seq
Reverse (-)
44317970 .. 44323688
5719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363220.1

Sequence Viewer

Length: 3444 bp
ATGGGTTCTCTTTGGGACGCCGATTATGAAATTGGGCCGATGAAGACCGATCCTCGCCACACCCAGCCCCTTGATACTCAGATTTCAACCCCTCCCCTTTCTGATGAAGAGGCCAAAGGAGGGGATGCTGATGAGTGTATGCAAGACACTCAGCCTATCGATGATACCGTTCCGGTTGAAGATGCATTTGATACCCAAGTGGTGTGTCTTGCCGGCGAAACCCAGCTACTTGATGATTTCAACTGCATTGGGGACATGGAGACGCAGTTACTGGATTTGGATGATCGGGTTGTCAGTGACAGTGAAGAGGAAGACTCGGATGCAACTCAAGTTTTAGATGTTGATGAGGATGTCTCGGAGGAGGTGTCAGTAACAAGAGGTGACGGTCAGTTAGTGGACGAGGAGAAAACTCACTGCGCTGGTATTTGCCAAGATAGCGAGAAGAGGCTGATGCAGCAAGCTAGTCATTTGGTCAATGAACAACGTAATGCAGGATATGTGCGTATGCATTTCACTTCAGTTCGTGCAGCATCCTTGCGGGCCTCTGGTCTAGCAGCTCGGAACAACAGTGGGTCTCGTTCTGTTCCATGCGGTAATCATTCTTTGGAGCAACTTGCAACCATAGGTGGAACGGAAGTCGATCAGGAAAATGATATGGGGAGAAATGATGATACAATTAAGAGTTCAAGGGTTGGTAGTTCAACAGTGAGAAAACTTTTTACTGACGATCCAGATGGTGAAAATGAGGGATTTCCTCATGACAGTAATAGTTTTGAAGAAGGAGAAGACTTGCTTCAGTTGCCTTCTTGTGATTTGGCAGGGTTAAGCTATGCTGATTCTCAAGAACCTGGAGAGTTATCACAGGCTAATGCTCTGAATTTTGTGGATAAGTTTCTCCAAGATAATGCTGAGGAGTTTGATAAAGAAGGTGATTGCAGAAAGAGTTCTAAGAAAAATTCAAAAGTTGTCTCAAGTGCAAAAGGGCCACAAACATTGGCGAAGAAAGTCAATGATATAAGCTTAGTTACAGATGCAGGCATTTATGAGTGGGATGATAATCGTGAGGATGAAGGAGGTGGTGAATTGTTTCGCCGAAAAAGGACAGACTTCTTTAGCGGTGGAAGTCATGGGTCAAAATCTGTTCCCCAACCTCGGAAAGCGAAAAGGAACAGAACGGATGAGCTGAATGATAACAAACGGAAATTGCAGGGAAAGAACAAGAAAATTGGTGTAGTTCATTCTGATTCCAAATTGTTGGTGCTGGATTCAAAAGCCCATGAGAAGATGGAAAGTGAAGATGAAATGAGACACAAACGGAACCTTACTAGTGAGTTTGACGAACAGTTTAATATCTGCTCCACTAGAGGACAGTTGGATGTTCATGATAAGACCCAGGTGCCTGAAATGCTAAATGTAGGTTTTGATACTCAAATAGCTGCTGAAGCTATGGAAGCCTTATTCAACGGTGAAGGAATTTCCAATTGTGAGGCCAATGATGCTATTCACAGAAACTCACCTGAAGGTCCAATGGGAGAAAAGACGAAGAATATAAGTGTGAAGAAACCCCATTCTCAAAAAAGAGCACGCCTTTCTGATGCAGGGGTTGATTCTCGAGAATCCCAACAAGCCAAGAAAACAAGGAGGGTTGATCCCTACTCAAGTAAAGATTCCTTGACAGCACCTCCGGAAAATTCTAAGAATGCCAGGAAGCCGCATGAAACTGCATTGGTGATAACAAAATCAAAGAAGCCCAAGTCACATGCTGCAAAACACGATAGTATCAGTCAGAGGAGAATCTTGGAGAGAGTACCTTCTGTTTCCATTGACCAAAGAACAGAAAGATCCAAGAAACAGAATTTACAACATGGTGGTACCTCTACACCCATTGCACGTCGAACTAGGCAATCTATGCTGGTGAATCAGTTCAATATAGCTGATAATGCATCCCTTGATTGTGGAGAGGAGTCTAACCATGTGACGGAGGATGCTGCTGGTGTTCATATGGCTGAAGAGTTGAGTGCAAAATCTTCAAAACAGGGTCCCAATGAAGCTAGCAGGGTTGGAAAGACGAAGCAAAACCAATACGAGCATGCAGATGTTAATTTCAGAGCTGTTGGTAATGGGGTCAAATTGGATGGATTAAGCTTTCCTAGAGGACGAAGATCTCAGCGAAATTTGTCCGGCAAGGTTTATGGGCCTGATGACTTAGATGATCCATCTGAGCCATCTATTCAGCCAGAGAAATTTGGAAAATGTGGCACTAGGCACAAAAGGCCACAGGATGCTAGAGGCACTACTGTTGATAAAACGTTTAAAAGGGAAACGCGATCTTCCACATGTGGATCTCTTGGAAATAAGAATTTGGAAGGAAATTTTGCACAGAAAAATTTAGACAAAGGAGGTTCTGGCGGTGCTCCCCTTCATTGTAATTCTTCTCATAAAACTGTGGTAAAGACTGTTAGGGCCCCTGACAGGTTGAGTGATGCAAGTGCCTCTTCTGTTAGAATGAGGGATAAATCCCCACGTCAGAAAGCTGTCTGTCAACAATCTGATGCAGCATGTACTACTCCGGTTAACCACAATAAGGTGGCTGTCAATGATGTATCTCCTGTTTGTATGGGTAATGAATATTTCAAACAGTCATGCAAGAGGAGCCTATCAAGGCCAAGCCTTTTGAAAGAACTCCGTGACTTGAGTCCACTTGAGCCTGAACCAACTTCAACCTCAAAGGATTTAAGGAGGAGGAGAGACATGACTGATGTTCGAGTGCTATATAGTCACCACTTAGATGAGGACATAATTAAGCAGCAGAAGAAGGTTTTGGGCCGGCTAGGAGTTTCTGTTGCCTCCTCGATGACAGATGCCACACACTTCATAGCAGATCAGTTTGTGCGAACAAGGAATATGTTAGAAGCTATAGCTTCTGGAAAACCAGTGGTGACACATTTATGGCTAGAGAGCTGTGGACAAGCTAATTGTTTCATTGATGAGAAAAATTACATACTAAGGGATACTAAAAAGGAGAAGCAATTTGGCTTTAGCATGCCAGCTTCGTTGGCATGTGCCTGCCAACATCCACTTTTAAAGGATCGGAAAGTCTTTATCACCCCAAATACAAAGCCTGGTAAAGAAATAATTTCGAGTCTGGTCAAAGCAGTCAATGGCCAGGCAGTGGAGAGAATCGGCAGATCTACTTTGAAGGCTGATCAGATTCCAGATGATCTGTTGGTTCTATCTTGCGAAGAAGATTATGAAATTTGTGTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACAGCTCAGAGCTGGTTTTGAATGGGATTGTTACTCAGAAGCTGGAATTTGAAAGACATCGCATTTTCACTGATCAAGTTAAGAAAACCCGGTCTACCATATGGTTGAGGAAAGATGGCAATAAGTTCCAGCCTGTGTCCAAAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

1147

Amino Acids

126.93

Weight (kDa)

6.16

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTT107_BRCT_5 PF16770 909 - 1002 4.8e-10 Regulator of Ty1 transposition protein 107 BRCT domain
BRCT_2 PF16589 1026 - 1113 1.8e-17 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1871
AccB1I GGYRCC 2 cut(s) 1396, 1871
AccB7I CCANNNNNTGG 1 cut(s) 3172
AccI GTMKAC 1 cut(s) 3386
AccII CGCG 1 cut(s) 2326
AccIII TCCGGA 1 cut(s) 1684
AciI CCGC 5 cut(s) 538, 591, 1116, 1712, 2409
AclI AACGTT 1 cut(s) 2309
AclWI GGATC 7 cut(s) 44, 722, 1643, 1836, 2207, 2350, 3096
AcoI YGGCCR 1 cut(s) 3163
AcuI CTGAAG 5 cut(s) 501, 779, 1461, 1539, 2028
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 3 cut(s) 1809, 1873, 2563
AfiI CCNNNNNNNGG 6 cut(s) 120, 1152, 1978, 2472, 2584, 3172
AflIII ACRYGT 1 cut(s) 2336
AhlI ACTAGT 1 cut(s) 1325
AjiI CACGTC 2 cut(s) 1892, 2525
AjnI CCWGG 5 cut(s) 847, 1392, 1703, 3121, 3165
AjuI GAANNNNNNNTTGG 2 cut(s) 2804, 2836
Alw21I GWGCWC 2 cut(s) 1585, 2416
Alw26I GTCTC 6 cut(s) 254, 358, 579, 973, 1300, 2742
AlwI GGATC 7 cut(s) 44, 722, 1643, 1836, 2207, 2350, 3096
AlwNI CAGNNNCTG 2 cut(s) 271, 3334
Ama87I CYCGRG 1 cut(s) 1611
Aor13HI TCCGGA 1 cut(s) 1684
ApaI GGGCCC 1 cut(s) 2467
ApeKI GCWGC 9 cut(s) 454, 527, 554, 1436, 1763, 1988, 2555, 2806, 3284
Asp700I GAANNNNTTC 3 cut(s) 943, 1086, 1922
Asp718I GGTACC 1 cut(s) 1871
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 9 cut(s) 35, 540, 983, 1523, 2039, 2195, 2463, 2464, 2824
AsuC2I CCSGG 1 cut(s) 3382
AsuNHI GCTAGC 1 cut(s) 2051
AvaI CYCGRG 1 cut(s) 1611
AvaII GGWCC 2 cut(s) 1523, 2039
BaeGI GKGCMC 1 cut(s) 2467
BaeI ACNNNNGTAYC 4 cut(s) 183, 216, 1762, 1795
BalI TGGCCA 1 cut(s) 3165
BanI GGYRCC 2 cut(s) 1396, 1871
BanII GRGCYC 1 cut(s) 2467
BbsI GAAGAC 3 cut(s) 50, 318, 792
Bbv12I GWGCWC 2 cut(s) 1585, 2416
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 9 cut(s) 466, 539, 566, 1423, 1750, 1975, 2567, 2818, 3271
BccI CCATC 6 cut(s) 728, 1279, 2129, 2224, 2233, 3401
BciT130I CCWGG 5 cut(s) 849, 1394, 1705, 3123, 3167
BciVI GTATCC 1 cut(s) 3004
BclI TGATCA 2 cut(s) 3205, 3364
BcnI CCSGG 1 cut(s) 3382
BcoDI GTCTC 6 cut(s) 254, 358, 579, 973, 1300, 2742
BcuI ACTAGT 1 cut(s) 1325
BfmI CTRYAG 2 cut(s) 2916, 3285
BfuI GTATCC 1 cut(s) 3004
BglII AGATCT 2 cut(s) 2162, 3188
Bme1390I CCNGG 6 cut(s) 849, 1394, 1705, 3123, 3167, 3382
Bme18I GGWCC 2 cut(s) 1523, 2039
BmeT110I CYCGRG 1 cut(s) 1611
BmgBI CACGTC 2 cut(s) 1892, 2525
BmgT120I GGNCC 9 cut(s) 35, 540, 983, 1523, 2039, 2195, 2463, 2464, 2824
BmiI GGNNCC 8 cut(s) 1319, 1398, 1873, 2040, 2041, 2465, 2466, 2654
BmrFI CCNGG 6 cut(s) 849, 1394, 1705, 3123, 3167, 3382
BmtI GCTAGC 1 cut(s) 2055
BoxI GACNNNNGTC 1 cut(s) 2694
BpiI GAAGAC 3 cut(s) 50, 318, 792
BplI GAGNNNNNCTC 4 cut(s) 299, 331, 338, 370
BpmI CTGGAG 1 cut(s) 870
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 6 cut(s) 312, 825, 955, 1642, 2713, 2723
BpuMI CCSGG 1 cut(s) 3382
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 1056
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 1151, 1392
BsaWI WCCGGW 3 cut(s) 172, 1684, 2569
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 1152, 1978, 2472, 2584, 3172
Bse118I RCCGGY 2 cut(s) 212, 2826
Bse1I ACTGG 2 cut(s) 276, 2933
Bse3DI GCAATG 1 cut(s) 1884
Bse8I GATNNNNATC 1 cut(s) 1056
BseAI TCCGGA 1 cut(s) 1684
BseBI CCWGG 5 cut(s) 849, 1394, 1705, 3123, 3167
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 1151, 1392
BseJI GATNNNNATC 1 cut(s) 1056
BseLI CCNNNNNNNGG 6 cut(s) 120, 1152, 1978, 2472, 2584, 3172
BseMI GCAATG 1 cut(s) 1884
BseMII CTCAG 7 cut(s) 92, 164, 900, 2180, 2211, 3312, 3341
BseNI ACTGG 2 cut(s) 276, 2933
BseRI GAGGAG 9 cut(s) 374, 416, 926, 1804, 1976, 2665, 2755, 2758, 2839
BseSI GKGCMC 1 cut(s) 2467
BseXI GCAGC 9 cut(s) 466, 539, 566, 1423, 1750, 1975, 2567, 2818, 3271
BseYI CCCAGC 2 cut(s) 63, 222
BsgI GTGCAG 1 cut(s) 546
Bsh1236I CGCG 1 cut(s) 2326
BshNI GGYRCC 2 cut(s) 1396, 1871
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 1585, 2416
BsiHKCI CYCGRG 1 cut(s) 1611
BsiSI CCGG 7 cut(s) 173, 213, 1685, 2181, 2570, 2827, 3382
BslFI GGGAC 3 cut(s) 29, 266, 2025
BslI CCNNNNNNNGG 6 cut(s) 120, 1152, 1978, 2472, 2584, 3172
BsmAI GTCTC 6 cut(s) 254, 358, 579, 973, 1300, 2742
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 3 cut(s) 29, 266, 2025
BsmI GAATGC 1 cut(s) 1705
Bso31I GGTCTC 1 cut(s) 579
BsoBI CYCGRG 1 cut(s) 1611
Bsp120I GGGCCC 1 cut(s) 2463
Bsp1286I GDGCHC 3 cut(s) 1585, 2416, 2467
Bsp13I TCCGGA 1 cut(s) 1684
BspACI CCGC 5 cut(s) 538, 591, 1116, 1712, 2409
BspCNI CTCAG 7 cut(s) 91, 163, 901, 2179, 2212, 3311, 3340
BspDI ATCGAT 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 1684
BspFNI CGCG 1 cut(s) 2326
BspHI TCATGA 2 cut(s) 757, 1381
BspLI GGNNCC 8 cut(s) 1319, 1398, 1873, 2040, 2041, 2465, 2466, 2654
BspMAI CTGCAG 1 cut(s) 3289
BspOI GCTAGC 1 cut(s) 2055
BspPI GGATC 7 cut(s) 44, 722, 1643, 1836, 2207, 2350, 3096
BspT107I GGYRCC 2 cut(s) 1396, 1871
BspTNI GGTCTC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 1884
BsrFI RCCGGY 2 cut(s) 212, 2826
BsrI ACTGG 2 cut(s) 276, 2933
BssAI RCCGGY 2 cut(s) 212, 2826
BssECI CCNNGG 2 cut(s) 1151, 1392
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 5 cut(s) 849, 1394, 1705, 3123, 3167
Bst6I CTCTTC 5 cut(s) 102, 300, 437, 2004, 2500
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1909
BstFNI CGCG 1 cut(s) 2326
BstHHI GCGC 1 cut(s) 419
BstMAI GTCTC 6 cut(s) 254, 358, 579, 973, 1300, 2742
BstNI CCWGG 5 cut(s) 849, 1394, 1705, 3123, 3167
BstNSI RCATGY 6 cut(s) 1763, 2093, 2340, 2562, 3046, 3063
BstPAI GACNNNNGTC 1 cut(s) 2694
BstSCI CCNGG 6 cut(s) 847, 1392, 1703, 3121, 3165, 3380
BstSFI CTRYAG 2 cut(s) 2916, 3285
BstSLI GKGCMC 1 cut(s) 2467
BstUI CGCG 1 cut(s) 2326
BstV1I GCAGC 9 cut(s) 466, 539, 566, 1423, 1750, 1975, 2567, 2818, 3271
BstV2I GAAGAC 3 cut(s) 50, 318, 792
BstX2I RGATCY 4 cut(s) 1841, 2162, 2342, 3188
BstXI CCANNNNNNTGG 1 cut(s) 1255
BstYI RGATCY 4 cut(s) 1841, 2162, 2342, 3188
Bsu15I ATCGAT 1 cut(s) 159
BsuI GTATCC 1 cut(s) 3004
BsuTUI ATCGAT 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 3335
BtrI CACGTC 2 cut(s) 1892, 2525
BtsI GCAGTG 2 cut(s) 412, 3177
BtsIMutI CAGTG 8 cut(s) 301, 307, 412, 574, 711, 2940, 3177, 3360
CaiI CAGNNNCTG 2 cut(s) 271, 3334
CciI TCATGA 2 cut(s) 757, 1381
CfoI GCGC 1 cut(s) 419
Cfr10I RCCGGY 2 cut(s) 212, 2826
Cfr13I GGNCC 9 cut(s) 35, 540, 983, 1523, 2039, 2195, 2463, 2464, 2824
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 2 cut(s) 26, 271
Csp6I GTAC 3 cut(s) 1808, 1872, 2562
CspCI CAANNNNNGTGG 2 cut(s) 975, 1010
CviQI GTAC 3 cut(s) 1808, 1872, 2562
DraI TTTAAA 2 cut(s) 2314, 3084
EaeI YGGCCR 1 cut(s) 3163
Eam1104I CTCTTC 5 cut(s) 102, 300, 437, 2004, 2500
EarI CTCTTC 5 cut(s) 102, 300, 437, 2004, 2500
Eco24I GRGCYC 1 cut(s) 2467
Eco31I GGTCTC 1 cut(s) 579
Eco47I GGWCC 2 cut(s) 1523, 2039
Eco57I CTGAAG 5 cut(s) 501, 779, 1461, 1539, 2028
Eco88I CYCGRG 1 cut(s) 1611
EcoO109I RGGNCCY 3 cut(s) 2039, 2463, 2464
EcoRII CCWGG 5 cut(s) 847, 1392, 1703, 3121, 3165
EcoT22I ATGCAT 3 cut(s) 187, 510, 1945
EcoT38I GRGCYC 1 cut(s) 2467
Esp3I CGTCTC 1 cut(s) 254
FalI AAGNNNNNCTT 4 cut(s) 777, 809, 2479, 2511
FaqI GGGAC 3 cut(s) 29, 266, 2025
FauI CCCGC 1 cut(s) 531
FauNDI CATATG 2 cut(s) 2001, 3392
FbaI TGATCA 2 cut(s) 3205, 3364
FblI GTMKAC 1 cut(s) 3386
FriOI GRGCYC 1 cut(s) 2467
GlaI GCGC 1 cut(s) 418
GsaI CCCAGC 2 cut(s) 67, 226
GsuI CTGGAG 1 cut(s) 870
HapII CCGG 7 cut(s) 173, 213, 1685, 2181, 2570, 2827, 3382
HgaI GACGC 2 cut(s) 26, 271
HhaI GCGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 2 cut(s) 2543, 2575
HindII GTYRAC 2 cut(s) 2543, 2575
HindIII AAGCTT 2 cut(s) 1018, 2143
HpaI GTTAAC 1 cut(s) 2575
HpaII CCGG 7 cut(s) 173, 213, 1685, 2181, 2570, 2827, 3382
Hpy166II GTNNAC 7 cut(s) 397, 2543, 2575, 2699, 2966, 3292, 3387
Hpy8I GTNNAC 7 cut(s) 397, 2543, 2575, 2699, 2966, 3292, 3387
Hpy99I CGWCG 1 cut(s) 1896
HpyCH4IV ACGT 4 cut(s) 484, 1891, 2309, 2524
HpySE526I ACGT 4 cut(s) 484, 1891, 2309, 2524
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 1 cut(s) 417
KflI GGGWCCC 1 cut(s) 2039
Kpn2I TCCGGA 1 cut(s) 1684
KpnI GGTACC 1 cut(s) 1875
KroI GCCGGC 2 cut(s) 212, 2826
KroNI GCCGGC 2 cut(s) 214, 2828
Ksp22I TGATCA 2 cut(s) 3205, 3364
KspAI GTTAAC 1 cut(s) 2575
LmnI GCTCC 5 cut(s) 607, 1361, 2419, 2652, 3281
Lsp1109I GCAGC 9 cut(s) 466, 539, 566, 1423, 1750, 1975, 2567, 2818, 3271
MaeII ACGT 4 cut(s) 484, 1891, 2309, 2524
MfeI CAATTG 1 cut(s) 1480
MflI RGATCY 4 cut(s) 1841, 2162, 2342, 3188
MhlI GDGCHC 3 cut(s) 1585, 2416, 2467
MlsI TGGCCA 1 cut(s) 3165
MluNI TGGCCA 1 cut(s) 3165
MlyI GAGTC 4 cut(s) 308, 1973, 2704, 3151
MmeI TCCRAC 2 cut(s) 1353, 2041
Mox20I TGGCCA 1 cut(s) 3165
Mph1103I ATGCAT 3 cut(s) 187, 510, 1945
MroI TCCGGA 1 cut(s) 1684
MroNI GCCGGC 2 cut(s) 212, 2826
MroXI GAANNNNTTC 3 cut(s) 943, 1086, 1922
MscI TGGCCA 1 cut(s) 3165
MslI CAYNNNNRTG 3 cut(s) 2094, 2787, 2947
Msp20I TGGCCA 1 cut(s) 3165
MspI CCGG 7 cut(s) 173, 213, 1685, 2181, 2570, 2827, 3382
MspR9I CCNGG 6 cut(s) 849, 1394, 1705, 3123, 3167, 3382
MunI CAATTG 1 cut(s) 1480
Mva1269I GAATGC 1 cut(s) 1705
MvaI CCWGG 5 cut(s) 849, 1394, 1705, 3123, 3167
MvnI CGCG 1 cut(s) 2326
NaeI GCCGGC 2 cut(s) 214, 2828
NciI CCSGG 1 cut(s) 3382
NdeI CATATG 2 cut(s) 2001, 3392
NgoMIV GCCGGC 2 cut(s) 212, 2826
NheI GCTAGC 1 cut(s) 2051
NlaIV GGNNCC 8 cut(s) 1319, 1398, 1873, 2040, 2041, 2465, 2466, 2654
NmuCI GTSAC 7 cut(s) 296, 380, 1755, 1975, 2687, 2777, 2938
NsiI ATGCAT 3 cut(s) 187, 510, 1945
NspI RCATGY 6 cut(s) 1763, 2093, 2340, 2562, 3046, 3063
PaeI GCATGC 2 cut(s) 2093, 3046
PaeR7I CTCGAG 1 cut(s) 1611
PagI TCATGA 2 cut(s) 757, 1381
PciI ACATGT 1 cut(s) 2336
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 1705
PdiI GCCGGC 2 cut(s) 214, 2828
PdmI GAANNNNTTC 3 cut(s) 943, 1086, 1922
PflMI CCANNNNNTGG 1 cut(s) 3172
PleI GAGTC 4 cut(s) 308, 1972, 2703, 3150
PpsI GAGTC 4 cut(s) 308, 1972, 2703, 3150
PpuMI RGGWCCY 1 cut(s) 2039
PscI ACATGT 1 cut(s) 2336
PshAI GACNNNNGTC 1 cut(s) 2694
Psp1406I AACGTT 1 cut(s) 2309
Psp5II RGGWCCY 1 cut(s) 2039
Psp6I CCWGG 5 cut(s) 847, 1392, 1703, 3121, 3165
PspFI CCCAGC 2 cut(s) 63, 222
PspGI CCWGG 5 cut(s) 847, 1392, 1703, 3121, 3165
PspN4I GGNNCC 8 cut(s) 1319, 1398, 1873, 2040, 2041, 2465, 2466, 2654
PspOMI GGGCCC 1 cut(s) 2463
PspPI GGNCC 9 cut(s) 35, 540, 983, 1523, 2039, 2195, 2463, 2464, 2824
PspPPI RGGWCCY 1 cut(s) 2039
PstI CTGCAG 1 cut(s) 3289
PstNI CAGNNNCTG 2 cut(s) 271, 3334
PsuI RGATCY 4 cut(s) 1841, 2162, 2342, 3188
RsaI GTAC 3 cut(s) 1809, 1873, 2563
RsaNI GTAC 3 cut(s) 1808, 1872, 2562
RseI CAYNNNNRTG 3 cut(s) 2094, 2787, 2947
Sau96I GGNCC 9 cut(s) 35, 540, 983, 1523, 2039, 2195, 2463, 2464, 2824
SchI GAGTC 4 cut(s) 308, 1973, 2704, 3151
ScrFI CCNGG 6 cut(s) 849, 1394, 1705, 3123, 3167, 3382
SduI GDGCHC 3 cut(s) 1585, 2416, 2467
SfcI CTRYAG 2 cut(s) 2916, 3285
Sfr274I CTCGAG 1 cut(s) 1611
SinI GGWCC 2 cut(s) 1523, 2039
SlaI CTCGAG 1 cut(s) 1611
SmiMI CAYNNNNRTG 3 cut(s) 2094, 2787, 2947
SmlI CTYRAG 7 cut(s) 327, 840, 970, 1611, 1657, 2692, 2702
SmoI CTYRAG 7 cut(s) 327, 840, 970, 1611, 1657, 2692, 2702
SpeI ACTAGT 1 cut(s) 1325
SphI GCATGC 2 cut(s) 2093, 3046
SsiI CCGC 5 cut(s) 538, 591, 1116, 1712, 2409
SspI AATATT 1 cut(s) 2630
StyD4I CCNGG 6 cut(s) 847, 1392, 1703, 3121, 3165, 3380
TaiI ACGT 4 cut(s) 487, 1894, 2312, 2527
TaqI TCGA 7 cut(s) 159, 639, 1612, 1894, 2764, 2852, 3140
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 2561
TauI GCSGC 1 cut(s) 1714
TscAI CASTG 8 cut(s) 301, 307, 419, 574, 711, 2940, 3177, 3367
TseFI GTSAC 7 cut(s) 296, 380, 1755, 1975, 2687, 2777, 2938
TseI GCWGC 9 cut(s) 454, 527, 554, 1436, 1763, 1988, 2555, 2806, 3284
Tsp45I GTSAC 7 cut(s) 296, 380, 1755, 1975, 2687, 2777, 2938
TspGWI ACGGA 6 cut(s) 647, 1190, 1213, 1330, 1994, 2675
TspRI CASTG 8 cut(s) 301, 307, 419, 574, 711, 2940, 3177, 3367
Van91I CCANNNNNTGG 1 cut(s) 3172
VpaK11BI GGWCC 2 cut(s) 1523, 2039
XceI RCATGY 6 cut(s) 1763, 2093, 2340, 2562, 3046, 3063
XhoI CTCGAG 1 cut(s) 1611
XmiI GTMKAC 1 cut(s) 3386
XmnI GAANNNNTTC 3 cut(s) 943, 1086, 1922
Zsp2I ATGCAT 3 cut(s) 187, 510, 1945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.