Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007475

Physical Location & Seq

Genomic Coordinates Forward (+)

10971294 .. 10972022

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGTTCTCTCTGGAATGGCGACGAAATCATGCCGATGGAGACAAACTCAGTCGCCGATTGCGCAGACACCGAGCCCATTGACACTCAGATTTCAAGCCCTCCATCGTCCGATGAAAAGGGCAAATCGAGGGATGCGGATGAGTTAGTGCGAGACACCGTGCCTTGTAATGACACTGTTCCAGTTGAAGATGCATTTGAAACCCAAATGGTAGATTTTGGTGGTGAAACCCAATTAATAGATTTCGGTGGCGAAACCCAATTAATGGATTTTGGTTGGGAAACCCAAGTAATGGATTTTGGTGATGGATTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RTT107_BRCT_5

Protein Analysis

106

Amino Acids

11.55

Weight (kDa)

4.05

Isoelectric Point (pI)

23.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21480
fragaria_vesca	FvH4_4g17010 FvH4_4g17010
malus_domestica	MD13G1175000.v1.1 MD16G1176700.v1.1
prunus_persica	Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1
pyrus_communis	pycom13g15080 pycom13g15090 pycom13g21560 pycom16g14820
rosa_chinensis	RchiOBHm_Chr4g0420701
rosa_laevigata	RLG00000007741
rosa_multiflora	Rmu_sc0007337.1_g000005 Rmu_sc0025789.1_g000001 Rmu_sc0034799.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363220
rosa_rugosa	Rorug04G0165600
rosa_samantha	Rh4AG227100 Rh4BG229800 Rh4CG242000 Rh4DG225400
rosa_wichuraiana	Rw4G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	64
AccB7I	CCANNNNNTGG	2 cut(s)	265, 292
AciI	CCGC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	265, 292
AgsI	TTSAA	3 cut(s)	96, 188, 200
Alw26I	GTCTC	2 cut(s)	35, 147
AseI	ATTAAT	2 cut(s)	236, 263
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	236, 314
BanII	GRGCYC	1 cut(s)	78
BccI	CCATC	3 cut(s)	31, 112, 299
BcoDI	GTCTC	2 cut(s)	35, 147
BmsI	GCATC	2 cut(s)	124, 181
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 292
Bse1I	ACTGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	139, 145
BseLI	CCNNNNNNNGG	2 cut(s)	265, 292
BseMII	CTCAG	2 cut(s)	63, 101
BseNI	ACTGG	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	265, 292
BsmAI	GTCTC	2 cut(s)	35, 147
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	62, 100
BsrI	ACTGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	160, 178
BstDEI	CTNAG	2 cut(s)	49, 87
BstF5I	GGATG	2 cut(s)	139, 145
BstHHI	GCGC	1 cut(s)	65
BstMAI	GTCTC	2 cut(s)	35, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	139, 145
BtsIMutI	CAGTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	65
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	2 cut(s)	76, 99
CviKI_1	RGCY	2 cut(s)	76, 99
DdeI	CTNAG	2 cut(s)	49, 87
Eco24I	GRGCYC	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	1 cut(s)	34
FaiI	YATR	1 cut(s)	32
FatI	CATG	1 cut(s)	30
FokI	GGATG	2 cut(s)	146, 152
FriOI	GRGCYC	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	64
GlaI	GCGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HphI	GGTGA	2 cut(s)	236, 314
Hpy188I	TCNGA	2 cut(s)	90, 112
Hpy188III	TCNNGA	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	160, 178
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	49, 87
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	63
LpnPI	CCDG	1 cut(s)	195
LweI	GCATC	2 cut(s)	124, 181
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	233, 260
MnlI	CCTC	2 cut(s)	111, 123
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	2 cut(s)	236, 263
MslI	CAYNNNNRTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	196
PflMI	CCANNNNNTGG	2 cut(s)	265, 292
PshBI	ATTAAT	2 cut(s)	236, 263
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	236, 263
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	2 cut(s)	124, 181
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	233, 260
SsiI	CCGC	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	160, 178
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	233, 260
Tru1I	TTAA	2 cut(s)	236, 263
Tru9I	TTAA	2 cut(s)	236, 263
TscAI	CASTG	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	2 cut(s)	265, 292
VspI	ATTAAT	2 cut(s)	236, 263
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.