Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007475

Physical Location & Seq

Genomic Coordinates Reverse (-)

18417542 .. 18418592

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTTCTCTCTGGGACGGCGATGATGAAATCAAGCCAATGGAGACAAACTCACTCCCTGGTTGCATCGACATAGAGCCCATCGACACTCAGATTTCAAGCCTTCCATCGTCTAATGAAAAGAGACTCGGTTATGATGTAGTTGCCATTGACACCGACAATGAGGAGTTGGATACAACTGAAGTTTTAGATGATAGTAAGGATCTAACGGATGAGGAATCACTACAAGGAGGCTCTGGTCAATCAGTGATTGAGGAGAATGTTCGCCCCACTTCTTGTGAAAATAGTGTAAATGGGTTAATGGAGGGAGCCAATTATTCGATCAACAAGCAACGAATTCAGGTCTCCGTGTTTCTGCTGCAACAGGTTGAAGGCTCTCCGGAACTGAGACCAGTGAACTGGACGAAGGAAAGCACAATCACTATACGAAGTTGTAGCTATGGTGATTGGTATTATCACGGTCTGCGGCCATGCCTGACAAGCTATATTAGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RTT107_BRCT_5

Protein Analysis

166

Amino Acids

18.41

Weight (kDa)

4.17

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21480
fragaria_vesca	FvH4_4g17010 FvH4_4g17010
malus_domestica	MD13G1175000.v1.1 MD16G1176700.v1.1
prunus_persica	Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1
pyrus_communis	pycom13g15080 pycom13g15090 pycom13g21560 pycom16g14820
rosa_chinensis	RchiOBHm_Chr4g0420701
rosa_laevigata	RLG00000007741
rosa_multiflora	Rmu_sc0007337.1_g000005 Rmu_sc0025789.1_g000001 Rmu_sc0034799.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363220
rosa_rugosa	Rorug04G0165600
rosa_samantha	Rh4AG227100 Rh4BG229800 Rh4CG242000 Rh4DG225400
rosa_wichuraiana	Rw4G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	99, 371
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	438, 483
AluI	AGCT	2 cut(s)	438, 483
Alw26I	GTCTC	4 cut(s)	38, 118, 349, 382
AlwI	GGATC	1 cut(s)	210
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	2 cut(s)	89, 115
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	4 cut(s)	38, 118, 349, 382
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	359, 467
BlsI	GCNGC	2 cut(s)	360, 468
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BsaI	GGTCTC	2 cut(s)	349, 382
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	392, 404
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	104, 377
BseNI	ACTGG	2 cut(s)	392, 404
BseRI	GAGGAG	2 cut(s)	179, 269
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	4 cut(s)	38, 118, 349, 382
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	469
Bso31I	GGTCTC	2 cut(s)	349, 382
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	202, 321
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	2 cut(s)	103, 378
BspEI	TCCGGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	210
BspTNI	GGTCTC	2 cut(s)	349, 382
BsrI	ACTGG	2 cut(s)	392, 404
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	202, 321
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	90, 386
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	205, 324
BstMAI	GTCTC	4 cut(s)	38, 118, 349, 382
BstMBI	GATC	2 cut(s)	202, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	469
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	252, 399
CviAII	CATG	1 cut(s)	471
CviJI	RGCY	9 cut(s)	37, 79, 102, 234, 311, 375, 438, 469, 483
CviKI_1	RGCY	9 cut(s)	37, 79, 102, 234, 311, 375, 438, 469, 483
DdeI	CTNAG	2 cut(s)	90, 386
DpnI	GATC	2 cut(s)	204, 323
DpnII	GATC	2 cut(s)	202, 321
EaeI	YGGCCR	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	2 cut(s)	349, 382
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	474
FaiI	YATR	6 cut(s)	74, 135, 425, 441, 472, 486
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	359, 467
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	359, 467
GluI	GCNGC	2 cut(s)	359, 467
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	1 cut(s)	474
HinfI	GANTC	2 cut(s)	126, 218
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	3 cut(s)	113, 365, 400
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4V	TGCA	2 cut(s)	66, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	2 cut(s)	90, 386
Hsp92II	CATG	1 cut(s)	474
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	202, 321
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	9 cut(s)	45, 72, 222, 326, 350, 385, 393, 405, 488
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	75
MalI	GATC	2 cut(s)	204, 323
MboI	GATC	2 cut(s)	202, 321
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	313, 336
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	157, 208, 224, 247, 298
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	1 cut(s)	299
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	480
NdeII	GATC	2 cut(s)	202, 321
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	360, 468
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	359, 467
Sau3AI	GATC	2 cut(s)	202, 321
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	345, 369, 440, 485
SfaNI	GCATC	1 cut(s)	75
Sse9I	AATT	2 cut(s)	313, 336
SsiI	CCGC	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	461
TaqI	TCGA	3 cut(s)	69, 84, 320
TasI	AATT	2 cut(s)	313, 336
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	252, 399
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	42, 132
TspGWI	ACGGA	2 cut(s)	224, 337
TspRI	CASTG	2 cut(s)	252, 399
XapI	RAATTY	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.