RLG00000007741

Regulator of Ty1 transposition protein 107 BRCT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007475
Physical Location & Seq
Forward (+)
20548400 .. 20553960
5561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007741

Sequence Viewer

Length: 3498 bp
ATGGGTTCTCTTTGGGACGCCGATTATGAAATTGGGCCGATGAAGACCGATCCTGGCCACACCCAGCCCCTTGATACTCAGATTTCAACCCCTCCCCTTTCTGATGAAAAGGCCAAAGGAGGGGATGCTGAAGAGTGTATGCAAGACACTGAGCCTATCGATGATACCGTTCCGGTTGAAGATGCATTTGATACCCAAGTGGTCTGTCTTGCCGGCGAAACCCAAGTGATGGATCTTGGCGGTGAAACCCAGCTGTTGGATGATTTCGACTGCATTGGGGACATGGAGACGCAGTTACTGGATTTGGATGATCGAGTTGTCAGTGACAGTGAAGGGGGAGACTCGGATGCAACTCAAGTTTTAGATGTTAATGAGGATGTCTCGGAGGAGGTCTCAATAACAAGAGGTGACGGTCAGTTAGTGGACGAGGAGAAAACTCACTGCGCTGATATTTGTCAAGATAGCGAGAAGAGGCTGATGCAGCAAGCTAGTCATTTGGTCAATGAGCAACATAATGCAGGATATGTGCGTATGCATTTCACTTCAGTTCGTGCAGCATCCTTGCGGGCCTCTGGTCTAGCGGCTCGGAACAACAGTGGGTCTCGTTCTGTTCCATGCGGTAATCATTCTTTGGAGCAACTTGCAAGCATAGGAGGAACGGAAGTTGATCAGGAAAATGATATGGGGAGAAATGATGATACAATTAAGAGTTCAAGGGTTGGTAGTTCAACAGTGAGAAAACTTTTTACTGACGATCCAGATGGTGAAAATGAGGGATTTCCTCATGACAGTAATAGTTTTGAAGAAGGAGAAGACTTGCTTCAGTTGCCTTCTTGTGATTTGGCAGGGTTAAGCTATGCTGATTCTCAAGAACCTGGAGAGTTATCACAGGCTAATGCTCTGAATTTTGTGGATAAGTTTCTCCAAGATAATGCTGAGGAGTTTGATAAAGAAGGTGATTGCAGAAAGAGTTCTAAGAAAAATTCAAAAGTTGTCTCAAGTGCAAAAGGGCCACAAACGTTGGCGAAGAAAGTCAATGATATAAGCTTAGTTACAGATGCAGGCATTTATGAGTGGGATGATAATCGGGAGGATGAAGGAGGTGGTGAATTGTTTTGCCGAAAAAAGACAGACTTCTTTAGCGGTGGAAGTCATGGGTCAAAATCTGTTCCCCAACCTCGGAAGGCGAAAAGGAACAGAACGGATGAGCTGAATGATAACAAACGGAAATTGCAGGGAAAGAACAAGAAAATTGGTGTAGTTCATTCTGATTCCAAATTGTTGGTGCGGGATTCAAAAGCCCATGAGAAGATGGAAAGTGAAGACGAAATGAGACACAAAAGGAACCTCACCAGTGAGTTTGACGAACAGTTTAATATCTGCTCCACTAGAGGACAGTTGGATGTTCATGATAAGACCCAGGTGCCTGAAATGCTAAATGTAGGTTTTGATACTCAAATAGCTGCTGAAGCTATGGAAGCCTTATTCAACGGTGAAGGAATTTCCAATTGTGAGGCCAATGATGCTATTCACAGAAACTCACCTGAAGGTTCAATGGGAGAAAAGATAAAGAATATAAGTGTGAAGAAACCCCATTCTCGAAAAAGAGCACGCCTTTCTGATGCAGGGGTTGATTCTCGAGAATCCCAACAAGCCAAGAAAACAAGGAGGGTTGATCCCAACTCAAGTAAAGATTCCTTGACAGCACCTCCGGAAAATTCTAAGAATGCCAAGAAGCCGCATGAAACTGCATTGGTGATAACAAAATCAAAGAAGGCCAAGTCACATGCTGCAAAACAGGATAGTATCAGTCAGAGGAAAATCTTGGAGGGAGTACCTTCTGTTTCCATTGACCAAAGAACGGAAAGATCTAAGAAACAATATTTACAACATGGTGGTACCTCTACACCCATTGCACGTCGAACTAGGCAATCTATGCTCGTGAATCAGTTCAATATAGCTGATAATGCATCCAGTGATTGTGGAGAAGAGTCTAACTATGTGACGGAGGATGCTGCTGGTGTTCATATGGCTAAAGAGTTGAGTGCAAAATCTTCGAAACAGGGTCCCAATGAAGCTAGCAGGGCTGGAAAGACGAAAGAAAACCAATACGAGCATGCAGATGTTAATTTCAGAGCTGTTGGTAACGGGGTCAAATTGGATGGGTTAAGCTTTCCTAGAGGACGAAGATCTCAGCGAAATTTGTCCGGCAAGATTTATGGTCCTGATGACTTAGATGATCCATCTGAGCCATCTATTCAGCCAGAGAAATTTGGACAATATGCCACTAGGCACAAAAGGTCACAGGATGCTAGAAGCACTACTGTTGATAAAACATTTAAAAGGGAAACGCGATCTTCCACATGTGGATCTCTTGGAAATAAGAATTTGGAAGGAAATTTTGCGCAGAAAAATTTAGACAAAGGAGGTTCTGGTGGTGCTCCCCTCCATTCTAATTCTTCTCATAAAGATGGGAAAATGAGATCAGAGAATATAACTGTGGAGAAGACTGTTAGGGTCCCTGACCGGTTGAGTGATGCAAGTCCCTCTTCTGTTAGAATGAGGGATGAATCCCCACTTCAGAAAGCTGGCTGTCAACAATCTGATGCAGCATGTACTACTCCGGTTAACCACAATAAGGTGGCTGTCAATGATGTATCTCCTGTTTGTATGGGTAATGAATATTTCAAACAGTCATGCAAGAGGAGCCTATCAAGGCCGAGCCTTTTGAAAGAACTCCGTGACTTGAGTCCCCTTGAGCCTGAACCAACTTCAACATCAAAGGATTTAAGGAGGAGGAGAGACATGACTGATGTTCGAGTGCTATATAGTCACCACTTAGATGATGACACAATTAAGCAGCAGAAGAAGGTTTTGGGCCGACTAGGAGTTTCTGTTGCATCCTCGATGACAGATGCCACACACTTCATAGCAGATCAGTTTGTGCGAACAAGGAATATGTTAGAAGCTATAGCTTCTGGAAAACCAGTGGTGACACATTTATGGCTAGAGAGCTGTGGACAAGCTAACTGTTTCATTGACGAGAAAAATTACATACTAAGGGATACTAAAAAGGAGAAGGAGTTTGGCTTTAGCATGCCAGCTTCATTGGCACGTGCATGCCAACATCCACTTTTAAAGGATCGGAAAGTCTTTGTCACCCCAAATACAAAGCCTGGTAAAGAAATAATTTCGAGTCTGGTCAAAGCAGTCGATGGCCAGGCAGTGGAGAGAATTGGCAGATCTGCTTTGAAGGCTGATCAGATTCCAGATGATCTGTTGGTTCTATCTTGCGAAGAAGATTATGAAATTTGTTTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACAGCTCAGAGCTGGTATTGAATGGGATTGTTACTCAGAAGCTGGAATTTGAAAGACATCGCATTTTCACTGATCAAGTTAAGAAAACCCGGTCTACCATATGGTTGAGGAAAGATGGCAATAAGTTCCGGCCTGTGTCCAAACATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

1166

Amino Acids

128.62

Weight (kDa)

5.92

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTT107_BRCT_5 PF16770 927 - 1020 6.2e-10 Regulator of Ty1 transposition protein 107 BRCT domain
BRCT_2 PF16589 1044 - 1131 1.1e-16 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2406
Acc65I GGTACC 1 cut(s) 1898
AccB1I GGYRCC 2 cut(s) 1423, 1898
AccB7I CCANNNNNTGG 3 cut(s) 229, 256, 3226
AccI GTMKAC 1 cut(s) 3440
AccII CGCG 1 cut(s) 2353
AccIII TCCGGA 1 cut(s) 1711
AciI CCGC 7 cut(s) 240, 565, 581, 618, 1143, 1288, 1739
AclI AACGTT 1 cut(s) 1019
AclWI GGATC 7 cut(s) 44, 240, 749, 1670, 2234, 2377, 3150
AcoI YGGCCR 2 cut(s) 55, 3217
AcuI CTGAAG 6 cut(s) 150, 528, 806, 1488, 1566, 2564
AcvI CACGTG 1 cut(s) 3116
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 3 cut(s) 1836, 1900, 2617
AfiI CCNNNNNNNGG 7 cut(s) 120, 229, 256, 1179, 1861, 2638, 3226
AflIII ACRYGT 1 cut(s) 2363
AgeI ACCGGT 1 cut(s) 2526
AjiI CACGTC 1 cut(s) 1919
AjnI CCWGG 5 cut(s) 52, 874, 1419, 3175, 3219
AjuI GAANNNNNNNTTGG 2 cut(s) 2858, 2890
Alw21I GWGCWC 2 cut(s) 1612, 2443
Alw26I GTCTC 8 cut(s) 281, 333, 385, 397, 606, 1000, 1327, 2796
AlwI GGATC 7 cut(s) 44, 240, 749, 1670, 2234, 2377, 3150
AlwNI CAGNNNCTG 2 cut(s) 298, 3388
Ama87I CYCGRG 1 cut(s) 1638
Aor13HI TCCGGA 1 cut(s) 1711
ApeKI GCWGC 8 cut(s) 481, 554, 1463, 1790, 2015, 2609, 2860, 3338
AsiGI ACCGGT 1 cut(s) 2526
Asp700I GAANNNNTTC 2 cut(s) 970, 1949
Asp718I GGTACC 1 cut(s) 1898
AspLEI GCGC 2 cut(s) 446, 2407
AspS9I GGNCC 7 cut(s) 35, 567, 1010, 2066, 2222, 2518, 2878
AsuC2I CCSGG 1 cut(s) 3436
AsuII TTCGAA 1 cut(s) 2057
AsuNHI GCTAGC 1 cut(s) 2078
AvaI CYCGRG 1 cut(s) 1638
AvaII GGWCC 3 cut(s) 2066, 2222, 2518
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BalI TGGCCA 2 cut(s) 57, 3219
BanI GGYRCC 2 cut(s) 1423, 1898
BauI CACGAG 1 cut(s) 1940
BbrPI CACGTG 1 cut(s) 3116
BbsI GAAGAC 4 cut(s) 50, 819, 1329, 2513
Bbv12I GWGCWC 2 cut(s) 1612, 2443
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2621, 2872, 3325
BccI CCATC 9 cut(s) 223, 755, 1306, 2156, 2251, 2260, 2465, 3209, 3455
BcgI CGANNNNNNTGC 2 cut(s) 2037, 2071
BciT130I CCWGG 5 cut(s) 54, 876, 1421, 3177, 3221
BciVI GTATCC 1 cut(s) 3058
BclI TGATCA 3 cut(s) 667, 3259, 3418
BcnI CCSGG 1 cut(s) 3436
BcoDI GTCTC 8 cut(s) 281, 333, 385, 397, 606, 1000, 1327, 2796
BfmI CTRYAG 2 cut(s) 2970, 3339
BfuI GTATCC 1 cut(s) 3058
BglII AGATCT 3 cut(s) 1868, 2189, 3242
Bme1390I CCNGG 6 cut(s) 54, 876, 1421, 3177, 3221, 3436
Bme18I GGWCC 3 cut(s) 2066, 2222, 2518
BmeT110I CYCGRG 1 cut(s) 1638
BmgBI CACGTC 1 cut(s) 1919
BmgT120I GGNCC 7 cut(s) 35, 567, 1010, 2066, 2222, 2518, 2878
BmiI GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2519, 2520, 2708
BmrFI CCNGG 6 cut(s) 54, 876, 1421, 3177, 3221, 3436
BmtI GCTAGC 1 cut(s) 2082
BoxI GACNNNNGTC 1 cut(s) 2748
BpiI GAAGAC 4 cut(s) 50, 819, 1329, 2513
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 377, 409
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 2057
BpuEI CTTGAG 6 cut(s) 339, 852, 982, 1669, 2767, 2777
BpuMI CCSGG 1 cut(s) 3436
Bsa29I ATCGAT 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 3116
BsaBI GATNNNNATC 1 cut(s) 1083
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 397, 606
BsaJI CCNNGG 2 cut(s) 1178, 1419
BsaWI WCCGGW 4 cut(s) 172, 1711, 2526, 2623
Bsc4I CCNNNNNNNGG 7 cut(s) 120, 229, 256, 1179, 1861, 2638, 3226
Bse118I RCCGGY 2 cut(s) 212, 2526
Bse1I ACTGG 4 cut(s) 303, 1353, 1974, 2987
Bse3DI GCAATG 1 cut(s) 1911
Bse8I GATNNNNATC 1 cut(s) 1083
BseAI TCCGGA 1 cut(s) 1711
BseBI CCWGG 5 cut(s) 54, 876, 1421, 3177, 3221
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 1178, 1419
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 7 cut(s) 120, 229, 256, 1179, 1861, 2638, 3226
BseMI GCAATG 1 cut(s) 1911
BseMII CTCAG 7 cut(s) 92, 141, 927, 2207, 2238, 3366, 3395
BseNI ACTGG 4 cut(s) 303, 1353, 1974, 2987
BseRI GAGGAG 6 cut(s) 401, 443, 953, 2719, 2809, 2812
BseXI GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2621, 2872, 3325
BseYI CCCAGC 2 cut(s) 63, 249
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 2353
BshNI GGYRCC 2 cut(s) 1423, 1898
BshTI ACCGGT 1 cut(s) 2526
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 1612, 2443
BsiHKCI CYCGRG 1 cut(s) 1638
BsiSI CCGG 8 cut(s) 173, 213, 1712, 2208, 2527, 2624, 3436, 3475
BslFI GGGAC 6 cut(s) 29, 293, 2052, 2504, 2529, 2736
BslI CCNNNNNNNGG 7 cut(s) 120, 229, 256, 1179, 1861, 2638, 3226
BsmAI GTCTC 8 cut(s) 281, 333, 385, 397, 606, 1000, 1327, 2796
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 6 cut(s) 29, 293, 2052, 2504, 2529, 2736
BsmI GAATGC 1 cut(s) 1732
Bso31I GGTCTC 2 cut(s) 397, 606
BsoBI CYCGRG 1 cut(s) 1638
Bsp119I TTCGAA 1 cut(s) 2057
Bsp1286I GDGCHC 2 cut(s) 1612, 2443
Bsp13I TCCGGA 1 cut(s) 1711
BspACI CCGC 7 cut(s) 240, 565, 581, 618, 1143, 1288, 1739
BspCNI CTCAG 7 cut(s) 91, 142, 928, 2206, 2239, 3365, 3394
BspDI ATCGAT 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 1711
BspFNI CGCG 1 cut(s) 2353
BspHI TCATGA 2 cut(s) 784, 1408
BspLI GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2519, 2520, 2708
BspMAI CTGCAG 1 cut(s) 3343
BspOI GCTAGC 1 cut(s) 2082
BspPI GGATC 7 cut(s) 44, 240, 749, 1670, 2234, 2377, 3150
BspT104I TTCGAA 1 cut(s) 2057
BspT107I GGYRCC 2 cut(s) 1423, 1898
BspTNI GGTCTC 2 cut(s) 397, 606
BsrDI GCAATG 1 cut(s) 1911
BsrFI RCCGGY 2 cut(s) 212, 2526
BsrI ACTGG 4 cut(s) 303, 1353, 1974, 2987
BssAI RCCGGY 2 cut(s) 212, 2526
BssECI CCNNGG 2 cut(s) 1178, 1419
BssNI GRCGYC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 1940
Bst2BI CACGAG 1 cut(s) 1940
Bst2UI CCWGG 5 cut(s) 54, 876, 1421, 3177, 3221
Bst6I CTCTTC 4 cut(s) 126, 464, 1983, 2554
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1936
BstBAI YACGTR 1 cut(s) 3116
BstBI TTCGAA 1 cut(s) 2057
BstFNI CGCG 1 cut(s) 2353
BstHHI GCGC 2 cut(s) 446, 2407
BstMAI GTCTC 8 cut(s) 281, 333, 385, 397, 606, 1000, 1327, 2796
BstNI CCWGG 5 cut(s) 54, 876, 1421, 3177, 3221
BstNSI RCATGY 6 cut(s) 1790, 2120, 2367, 2616, 3100, 3123
BstPAI GACNNNNGTC 1 cut(s) 2748
BstSCI CCNGG 6 cut(s) 52, 874, 1419, 3175, 3219, 3434
BstSFI CTRYAG 2 cut(s) 2970, 3339
BstUI CGCG 1 cut(s) 2353
BstV1I GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2621, 2872, 3325
BstV2I GAAGAC 4 cut(s) 50, 819, 1329, 2513
BstX2I RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3242
BstXI CCANNNNNNTGG 1 cut(s) 1282
BstYI RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3242
Bsu15I ATCGAT 1 cut(s) 159
BsuI GTATCC 1 cut(s) 3058
BsuTUI ATCGAT 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 3389
BtrI CACGTC 1 cut(s) 1919
BtsI GCAGTG 2 cut(s) 439, 3231
CaiI CAGNNNCTG 2 cut(s) 298, 3388
CciI TCATGA 2 cut(s) 784, 1408
CfoI GCGC 2 cut(s) 446, 2407
Cfr10I RCCGGY 2 cut(s) 212, 2526
Cfr13I GGNCC 7 cut(s) 35, 567, 1010, 2066, 2222, 2518, 2878
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 2 cut(s) 26, 298
Csp6I GTAC 3 cut(s) 1835, 1899, 2616
CspAI ACCGGT 1 cut(s) 2526
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviQI GTAC 3 cut(s) 1835, 1899, 2616
DraI TTTAAA 2 cut(s) 2341, 3138
EaeI YGGCCR 2 cut(s) 55, 3217
Eam1104I CTCTTC 4 cut(s) 126, 464, 1983, 2554
EarI CTCTTC 4 cut(s) 126, 464, 1983, 2554
Eco31I GGTCTC 2 cut(s) 397, 606
Eco47I GGWCC 3 cut(s) 2066, 2222, 2518
Eco57I CTGAAG 6 cut(s) 150, 528, 806, 1488, 1566, 2564
Eco72I CACGTG 1 cut(s) 3116
Eco88I CYCGRG 1 cut(s) 1638
EcoO109I RGGNCCY 2 cut(s) 2066, 2518
EcoRII CCWGG 5 cut(s) 52, 874, 1419, 3175, 3219
EcoT22I ATGCAT 3 cut(s) 187, 537, 1972
Esp3I CGTCTC 1 cut(s) 281
FalI AAGNNNNNCTT 6 cut(s) 804, 836, 1118, 1150, 2533, 2565
FaqI GGGAC 6 cut(s) 29, 293, 2052, 2504, 2529, 2736
FauI CCCGC 2 cut(s) 558, 1281
FauNDI CATATG 2 cut(s) 2028, 3446
FbaI TGATCA 3 cut(s) 667, 3259, 3418
FblI GTMKAC 1 cut(s) 3440
FspI TGCGCA 1 cut(s) 2406
GlaI GCGC 2 cut(s) 445, 2406
GsaI CCCAGC 2 cut(s) 67, 253
GsuI CTGGAG 1 cut(s) 897
HapII CCGG 8 cut(s) 173, 213, 1712, 2208, 2527, 2624, 3436, 3475
HgaI GACGC 2 cut(s) 26, 298
HhaI GCGC 2 cut(s) 446, 2407
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 2 cut(s) 444, 2405
HinP1I GCGC 2 cut(s) 444, 2405
HincII GTYRAC 2 cut(s) 2597, 2629
HindII GTYRAC 2 cut(s) 2597, 2629
HindIII AAGCTT 2 cut(s) 1045, 2170
HpaI GTTAAC 1 cut(s) 2629
HpaII CCGG 8 cut(s) 173, 213, 1712, 2208, 2527, 2624, 3436, 3475
Hpy166II GTNNAC 6 cut(s) 424, 2597, 2629, 3020, 3346, 3441
Hpy8I GTNNAC 6 cut(s) 424, 2597, 2629, 3020, 3346, 3441
Hpy99I CGWCG 1 cut(s) 1923
HpyCH4IV ACGT 3 cut(s) 1019, 1918, 3115
HpySE526I ACGT 3 cut(s) 1019, 1918, 3115
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 2 cut(s) 444, 2405
KflI GGGWCCC 2 cut(s) 2066, 2518
Kpn2I TCCGGA 1 cut(s) 1711
KpnI GGTACC 1 cut(s) 1902
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 3 cut(s) 667, 3259, 3418
KspAI GTTAAC 1 cut(s) 2629
LmnI GCTCC 5 cut(s) 634, 1388, 2446, 2706, 3335
Lsp1109I GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2621, 2872, 3325
MaeII ACGT 3 cut(s) 1019, 1918, 3115
MfeI CAATTG 1 cut(s) 1507
MflI RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3242
MhlI GDGCHC 2 cut(s) 1612, 2443
MlsI TGGCCA 2 cut(s) 57, 3219
MluNI TGGCCA 2 cut(s) 57, 3219
MlyI GAGTC 4 cut(s) 335, 2000, 2758, 3205
MmeI TCCRAC 2 cut(s) 237, 1380
Mox20I TGGCCA 2 cut(s) 57, 3219
Mph1103I ATGCAT 3 cut(s) 187, 537, 1972
MroI TCCGGA 1 cut(s) 1711
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 2 cut(s) 970, 1949
MscI TGGCCA 2 cut(s) 57, 3219
MslI CAYNNNNRTG 5 cut(s) 2121, 2469, 2841, 3001, 3118
Msp20I TGGCCA 2 cut(s) 57, 3219
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 8 cut(s) 173, 213, 1712, 2208, 2527, 2624, 3436, 3475
MspR9I CCNGG 6 cut(s) 54, 876, 1421, 3177, 3221, 3436
MunI CAATTG 1 cut(s) 1507
Mva1269I GAATGC 1 cut(s) 1732
MvaI CCWGG 5 cut(s) 54, 876, 1421, 3177, 3221
MvnI CGCG 1 cut(s) 2353
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 3436
NdeI CATATG 2 cut(s) 2028, 3446
NgoMIV GCCGGC 1 cut(s) 212
NheI GCTAGC 1 cut(s) 2078
NlaIV GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2519, 2520, 2708
NmeAIII GCCGAG 1 cut(s) 2745
NmuCI GTSAC 9 cut(s) 323, 407, 1782, 2002, 2301, 2741, 2831, 2992, 3157
NsbI TGCGCA 1 cut(s) 2406
NsiI ATGCAT 3 cut(s) 187, 537, 1972
NspI RCATGY 6 cut(s) 1790, 2120, 2367, 2616, 3100, 3123
NspV TTCGAA 1 cut(s) 2057
PaeI GCATGC 3 cut(s) 2120, 3100, 3123
PaeR7I CTCGAG 1 cut(s) 1638
PagI TCATGA 2 cut(s) 784, 1408
PciI ACATGT 1 cut(s) 2363
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 1732
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 970, 1949
PfeI GAWTC 9 cut(s) 863, 1271, 1292, 1634, 1643, 1694, 1945, 2570, 3265
PflMI CCANNNNNTGG 3 cut(s) 229, 256, 3226
PinAI ACCGGT 1 cut(s) 2526
PleI GAGTC 4 cut(s) 335, 1999, 2757, 3204
PmaCI CACGTG 1 cut(s) 3116
PmlI CACGTG 1 cut(s) 3116
PpsI GAGTC 4 cut(s) 335, 1999, 2757, 3204
Ppu21I YACGTR 1 cut(s) 3116
PpuMI RGGWCCY 2 cut(s) 2066, 2518
PscI ACATGT 1 cut(s) 2363
PshAI GACNNNNGTC 1 cut(s) 2748
Psp1406I AACGTT 1 cut(s) 1019
Psp5II RGGWCCY 2 cut(s) 2066, 2518
Psp6I CCWGG 5 cut(s) 52, 874, 1419, 3175, 3219
PspCI CACGTG 1 cut(s) 3116
PspFI CCCAGC 2 cut(s) 63, 249
PspGI CCWGG 5 cut(s) 52, 874, 1419, 3175, 3219
PspN4I GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2519, 2520, 2708
PspPI GGNCC 7 cut(s) 35, 567, 1010, 2066, 2222, 2518, 2878
PspPPI RGGWCCY 2 cut(s) 2066, 2518
PstI CTGCAG 1 cut(s) 3343
PstNI CAGNNNCTG 2 cut(s) 298, 3388
PsuI RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3242
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 3 cut(s) 1836, 1900, 2617
RsaNI GTAC 3 cut(s) 1835, 1899, 2616
RseI CAYNNNNRTG 5 cut(s) 2121, 2469, 2841, 3001, 3118
Sau96I GGNCC 7 cut(s) 35, 567, 1010, 2066, 2222, 2518, 2878
SchI GAGTC 4 cut(s) 335, 2000, 2758, 3205
ScrFI CCNGG 6 cut(s) 54, 876, 1421, 3177, 3221, 3436
SduI GDGCHC 2 cut(s) 1612, 2443
SfcI CTRYAG 2 cut(s) 2970, 3339
Sfr274I CTCGAG 1 cut(s) 1638
SfuI TTCGAA 1 cut(s) 2057
SinI GGWCC 3 cut(s) 2066, 2222, 2518
SlaI CTCGAG 1 cut(s) 1638
SmiMI CAYNNNNRTG 5 cut(s) 2121, 2469, 2841, 3001, 3118
SmlI CTYRAG 7 cut(s) 354, 867, 997, 1638, 1684, 2746, 2756
SmoI CTYRAG 7 cut(s) 354, 867, 997, 1638, 1684, 2746, 2756
SphI GCATGC 3 cut(s) 2120, 3100, 3123
SsiI CCGC 7 cut(s) 240, 565, 581, 618, 1143, 1288, 1739
SspI AATATT 2 cut(s) 1883, 2684
StyD4I CCNGG 6 cut(s) 52, 874, 1419, 3175, 3219, 3434
TaiI ACGT 3 cut(s) 1022, 1921, 3118
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 2615
TauI GCSGC 2 cut(s) 584, 1741
TfiI GAWTC 9 cut(s) 863, 1271, 1292, 1634, 1643, 1694, 1945, 2570, 3265
TseFI GTSAC 9 cut(s) 323, 407, 1782, 2002, 2301, 2741, 2831, 2992, 3157
TseI GCWGC 8 cut(s) 481, 554, 1463, 1790, 2015, 2609, 2860, 3338
Tsp45I GTSAC 9 cut(s) 323, 407, 1782, 2002, 2301, 2741, 2831, 2992, 3157
TspGWI ACGGA 6 cut(s) 674, 1217, 1240, 1877, 2021, 2729
Van91I CCANNNNNTGG 3 cut(s) 229, 256, 3226
VpaK11BI GGWCC 3 cut(s) 2066, 2222, 2518
XceI RCATGY 6 cut(s) 1790, 2120, 2367, 2616, 3100, 3123
XhoI CTCGAG 1 cut(s) 1638
XmiI GTMKAC 1 cut(s) 3440
XmnI GAANNNNTTC 2 cut(s) 970, 1949
Zsp2I ATGCAT 3 cut(s) 187, 537, 1972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.