Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034799.1

Orthogroup ID

OG0007475

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1472

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034799.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgggttctctttgggacgccgattatgaaattgggccgatgaagaccgatcctggccacacccagccccttgatactcagatttcaacccctcccctatctgatgaaaaggtcaaaggaggggatgctgatgagtgtatgcaagacactgagccttttgatgataccgttccggctgaagatgcatttgatacccaactggtgtgtcttgccggcgaaacccaagtgatggatcttggcggtgagacccagctactggatgatttcgactgcattggggacatggagacgcagttactggatttggatgatcgggttgtcagtgacagtgaaggggaagactcggatgcaactcaagttttagatgtcgatgaggatgtctcggaggaggtggaagtaacaagaggtgacggtcagttagtggacgaggagaaaactcactgcgctggtatttgccaagatagcgagaagaggctgatgcagcaagctagtcatttggtcaatgaacaacgtaatgcaggatatgtgcgtatgcatttcacttcagttcgtgcagcatctttgcgggcctctggtctagcggctcggaacaacagtgggtctcgttctgttccatgcggtaatcattctttggagcaacttgcaaccataggtggaacagaagtcgatcaggaaaatgatatggggagaaatgatgatacaattaagagttcaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RTT107_BRCT_5

Protein Analysis

239

Amino Acids

25.97

Weight (kDa)

4.05

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21480
fragaria_vesca	FvH4_4g17010 FvH4_4g17010
malus_domestica	MD13G1175000.v1.1 MD16G1176700.v1.1
prunus_persica	Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1 Prupe.1G143500_v2.0.a1
pyrus_communis	pycom13g15080 pycom13g15090 pycom13g21560 pycom16g14820
rosa_chinensis	RchiOBHm_Chr4g0420701
rosa_laevigata	RLG00000007741
rosa_multiflora	Rmu_sc0007337.1_g000005 Rmu_sc0025789.1_g000001 Rmu_sc0034799.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363220
rosa_rugosa	Rorug04G0165600
rosa_samantha	Rh4AG227100 Rh4BG229800 Rh4CG242000 Rh4DG225400
rosa_wichuraiana	Rw4G019650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	229, 256
AciI	CCGC	4 cut(s)	240, 565, 581, 618
AclWI	GGATC	2 cut(s)	44, 240
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	198, 528
AcyI	GRCGYC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	229, 256
AgsI	TTSAA	2 cut(s)	87, 714
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	253, 488
AluI	AGCT	2 cut(s)	253, 488
Alw26I	GTCTC	4 cut(s)	239, 281, 385, 606
AlwI	GGATC	2 cut(s)	44, 240
AlwNI	CAGNNNCTG	2 cut(s)	256, 298
AoxI	GGCC	3 cut(s)	35, 55, 567
ApeKI	GCWGC	2 cut(s)	481, 554
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	35, 567
AsuHPI	GGTGA	2 cut(s)	254, 419
BalI	TGGCCA	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	50, 345
BbvI	GCAGC	2 cut(s)	493, 566
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	4 cut(s)	239, 281, 385, 606
BfaI	CTAG	2 cut(s)	489, 578
BisI	GCNGC	3 cut(s)	482, 555, 582
BlsI	GCNGC	3 cut(s)	483, 556, 583
Bme1390I	CCNGG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	35, 567
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	5 cut(s)	115, 172, 337, 468, 566
BpiI	GAAGAC	2 cut(s)	50, 345
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpuEI	CTTGAG	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	239, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 256
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	204, 261, 303
BseBI	CCWGG	1 cut(s)	54
BseGI	GGATG	5 cut(s)	130, 265, 313, 352, 382
BseLI	CCNNNNNNNGG	2 cut(s)	229, 256
BseMII	CTCAG	2 cut(s)	92, 141
BseNI	ACTGG	3 cut(s)	204, 261, 303
BseRI	GAGGAG	2 cut(s)	401, 443
BseXI	GCAGC	2 cut(s)	493, 566
BseYI	CCCAGC	2 cut(s)	63, 249
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	37, 57, 569
BsiSI	CCGG	2 cut(s)	173, 213
BslFI	GGGAC	2 cut(s)	29, 293
BslI	CCNNNNNNNGG	2 cut(s)	229, 256
BsmAI	GTCTC	4 cut(s)	239, 281, 385, 606
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	29, 293
BsnI	GGCC	3 cut(s)	37, 57, 569
Bso31I	GGTCTC	2 cut(s)	239, 606
Bsp143I	GATC	4 cut(s)	49, 232, 310, 667
BspACI	CCGC	4 cut(s)	240, 565, 581, 618
BspANI	GGCC	3 cut(s)	37, 57, 569
BspCNI	CTCAG	2 cut(s)	91, 142
BspPI	GGATC	2 cut(s)	44, 240
BspTNI	GGTCTC	2 cut(s)	239, 606
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	204, 261, 303
BssAI	RCCGGY	1 cut(s)	212
BssMI	GATC	4 cut(s)	49, 232, 310, 667
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	169, 329, 413, 596
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	214, 486, 567
BstDEI	CTNAG	2 cut(s)	78, 150
BstF5I	GGATG	5 cut(s)	130, 265, 313, 352, 382
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	4 cut(s)	52, 235, 313, 670
BstMAI	GTCTC	4 cut(s)	239, 281, 385, 606
BstMBI	GATC	4 cut(s)	49, 232, 310, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 462, 481
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	493, 566
BstV2I	GAAGAC	2 cut(s)	50, 345
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	37, 57, 569
BtsCI	GGATG	5 cut(s)	130, 265, 313, 352, 382
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	5 cut(s)	147, 328, 334, 439, 601
Cac8I	GCNNGC	3 cut(s)	214, 486, 567
CaiI	CAGNNNCTG	2 cut(s)	256, 298
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	35, 567
CseI	GACGC	2 cut(s)	26, 298
CviAII	CATG	2 cut(s)	283, 615
DdeI	CTNAG	2 cut(s)	78, 150
DpnI	GATC	4 cut(s)	51, 234, 312, 669
DpnII	GATC	4 cut(s)	49, 232, 310, 667
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco31I	GGTCTC	2 cut(s)	239, 606
Eco57I	CTGAAG	2 cut(s)	198, 528
EcoRII	CCWGG	1 cut(s)	52
EcoT22I	ATGCAT	2 cut(s)	187, 537
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	2 cut(s)	286, 618
FaiI	YATR	8 cut(s)	27, 140, 284, 525, 533, 616, 650, 683
FaqI	GGGAC	2 cut(s)	29, 293
FatI	CATG	2 cut(s)	282, 614
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	482, 555, 582
FokI	GGATG	5 cut(s)	137, 272, 320, 359, 389
Fsp4HI	GCNGC	3 cut(s)	482, 555, 582
FspBI	CTAG	2 cut(s)	489, 578
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	3 cut(s)	482, 555, 582
GsaI	CCCAGC	2 cut(s)	67, 253
HaeIII	GGCC	3 cut(s)	37, 57, 569
HapII	CCGG	2 cut(s)	173, 213
HgaI	GACGC	2 cut(s)	26, 298
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	286, 618
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	2 cut(s)	173, 213
HphI	GGTGA	2 cut(s)	254, 419
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	81, 103, 346, 385, 588
Hpy188III	TCNNGA	1 cut(s)	671
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	4 cut(s)	169, 329, 413, 596
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	9 cut(s)	142, 185, 273, 350, 481, 518, 535, 554, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 462, 481
HpyF3I	CTNAG	2 cut(s)	78, 150
HpySE526I	ACGT	1 cut(s)	511
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	286, 618
HspAI	GCGC	1 cut(s)	444
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	49, 232, 310, 667
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	2 cut(s)	493, 566
LweI	GCATC	5 cut(s)	115, 172, 337, 468, 566
MaeI	CTAG	2 cut(s)	489, 578
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	4 cut(s)	294, 323, 397, 407
MalI	GATC	4 cut(s)	51, 234, 312, 669
MboI	GATC	4 cut(s)	49, 232, 310, 667
MboII	GAAGA	4 cut(s)	55, 191, 350, 481
MflI	RGATCY	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	2 cut(s)	30, 702
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	9 cut(s)	102, 113, 367, 379, 382, 398, 421, 465, 580
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	2 cut(s)	187, 537
MroNI	GCCGGC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	705
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	2 cut(s)	173, 213
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	182, 462, 481
NaeI	GCCGGC	1 cut(s)	214
NdeII	GATC	4 cut(s)	49, 232, 310, 667
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	286, 618
NmuCI	GTSAC	2 cut(s)	323, 407
NsiI	ATGCAT	2 cut(s)	187, 537
PdiI	GCCGGC	1 cut(s)	214
PflMI	CCANNNNNTGG	2 cut(s)	229, 256
PkrI	GCNGC	3 cut(s)	483, 556, 583
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	2 cut(s)	63, 249
PspGI	CCWGG	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	35, 567
PstNI	CAGNNNCTG	2 cut(s)	256, 298
PsuI	RGATCY	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	3 cut(s)	482, 555, 582
Sau3AI	GATC	4 cut(s)	49, 232, 310, 667
Sau96I	GGNCC	2 cut(s)	35, 567
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	7 cut(s)	114, 255, 393, 409, 490, 514, 655
SfaNI	GCATC	5 cut(s)	115, 172, 337, 468, 566
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	30, 702
SsiI	CCGC	4 cut(s)	240, 565, 581, 618
SspMI	CTAG	2 cut(s)	489, 578
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	4 cut(s)	169, 329, 413, 596
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	3 cut(s)	267, 369, 666
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	30, 702
TauI	GCSGC	1 cut(s)	584
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	5 cut(s)	154, 328, 334, 446, 601
TseFI	GTSAC	2 cut(s)	323, 407
TseI	GCWGC	2 cut(s)	481, 554
Tsp45I	GTSAC	2 cut(s)	323, 407
TspDTI	ATGAA	4 cut(s)	42, 56, 120, 519
TspRI	CASTG	5 cut(s)	154, 328, 334, 446, 601
Van91I	CCANNNNNTGG	2 cut(s)	229, 256
XspI	CTAG	2 cut(s)	489, 578
Zsp2I	ATGCAT	2 cut(s)	187, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.