Rh4DG225400

Regulator of Ty1 transposition protein 107 BRCT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007475
Physical Location & Seq
Reverse (-)
42949487 .. 42956064
6578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG225400.1

Sequence Viewer

Length: 3387 bp
ATGGGTTCTCTTTGGGACGCCGATTATGAAATTGGGCCGATGAAGACCGATCCTGGTCACACCCACACCCAGCCCCTTGATACTCAGATTTCAACCCCTCCCCTATCTGATGAAAAGGCCAAAGGAGGGGATGCTGATGAGTGTATGCAAGACACTGAGCCTTTTGATGATACCGTTCCGGTTGAAGATGCATTTGATACCCAATTGGTGTGTCTTGCCGGCGAAACCCAAGTGATGGAGACCCAGCTACTGGATGATTTCGACTGCATTGGGGACATGGAGACGCAGTTACTGGATTTGGATGATCGGGTTGTCAGTGACAGTGAAGGGGAAGACTCGGATGCAACTCAAGTTTTAGATGTCAATGAGGATGTCTTGGAGGAGGTGGAAGTAACAAGAGGTGACGGTCAGTTAGTGGACGAGGAGAAAACTCACTGCGCTGGTATTTGCCAAGATAGCGAGAAGAGGCTGATGCAGCAAGCTAGTCATTTGGTCAATGAACAACGTAATGCAGGATATGTGCGTATGCATTTCACTTCAGTTCGTGCAGCATCTTTGCGGGCCTCTGGTCTAGCGGCTCGGAACAACAGTGGGTCTCGTTCTGTTCCATGCGGTAATCATTCTTTGGAGCAACTTGCAACCATAGGTGGAACAGAAGTTGATCAGGAAAATGATATGTGGAGAAATGATGATACAATTAAGAGTTCAAGGGTTGGTAGTTCAACAGTGAGAAAACTTTTTACTGACGATCCAGATGGTGAAAATGAGGGATTTCCTCATGACAGTAATAGTTTTGAAGAAGGAGAAGACTTGTTTCAGTTGCCGTCTTGTGATTTGGCAGGGTTAAGCTATGCTGATTCTCAAGAACCTGGAGAGTTATCACAGGCTAATGCTCTGAATTTTGTGGATAAGTTTCTCCAAGATAATGCTGAGGAGTTTGATAAAGAAGGTGATTGCAGAAAGAGTTCTAAGAAAAATTCAAAAGTTGTCTCAAGTGCAAAAGGGCCACAAACATTGGCGAAGAAAGTCAATGATATAAGCTTAGTTATAGATGCAGGCATTTATGAGTGGGATGATAATCGTGAGGATGAAGGAGGTGGTGAATTGTTTCGCCGAAAAAGGACAGACTTCTTTAGTGGTGGAAGTCATGCGTCAAAATCTGTTCCCCAACCTCGGAAGGCGAAAAGGAACAGAACGGATGAGCTGAATGATAACAAACGGAAATTGCAGGGAAAGAACAAGAAAATTGGTGTAGTTCATTCTGATTCCAAATTGTTGGTGCTGGATTCAAAAGCCCATGAGAAGATGGAAAGTGAAGATGAAATGAGACACAAACGGAACCTCACTAGTGAGTTTGACGAACAGTTTAATATCTGCTCCACTAGAGGACAGTTGGATGTTCATGATAAGACCCAGGTGCCTGAAATGCTAAATGTAGGTTTTGATACTCAAATAGCTGCTGAAGCTATGGAAGCCTTATTCAACGGTGAAGGAATTTCCAATTGTGAGGCCAATGATGCTATTCACAGAAACTCAACTGAAGGTTCAATGGGAGAAAAGACGAAGAATATAAGTGTGAAGAAACCCCATTCTCGAAAAAGAGCACGCCTTTCTGATGCAGGGGTTGATTCTCGAGAATCCCAACGAGCCAAGAAAACAAGGAGGGTTGATCCCTACTCAAGTAAAGATTCCTTGACAGCACCTCCGGAAAATTCTAAGCATGCCAGGAAGCCGCATGAAACTGCATTGGTGATAACAAAATCAAAGAAGCCCAAGTCACATGCTGCAAAACACGATAGTATCAGTCAGAGGAGAATCTTGGAGAGGGTACCTTCTGTTTTCATTGACCAAAGAACAGAAAGATCCAAGAAACAGAATTTACAACATGGTGGTACCTCTACACCCATTGCACGTCGAACTAGGCAATCTATGCTGGTGAATCAGTTCAATATAGCTGATAATGCATCCACTGATTGTGGAGAGGAGTCTAACCATGTCACGGAGGATGCTGCTGGTGTTCATATGGCTGAAGAGTTGAGTGCAAAATCTTCAAAACAGGGTTCCAATGAAGCTAGCAGGGTTGGAAAGACGAAGCAAAACCAATACGAGCATGCAGATGTTAATTTCAGAGCTGTTGGTAATGGGGTCAAATTGGATGGATTAAGCTTTCCTAGAGGACGAAGATCTCAGCGAAATTTGTCCCGCAAGGTTTATGGGCCTGATGACTTAGATGATCCATCTGAGCCATCTATTCAGCCAGAGAAATTTGGAAAATGTGGCACTAGGCACAAAAGGCCACAGGATGCTAGAGGCACTACTGTTGATAAAACGTTTAAAAGGGAAACGCGATCTTCCACATGTGGATCTCTTGGAAATAAGAATTTGGAAGGAAATTTTGCACAGAAAAATTTAGACAAAGGAGGTTCTGGTGGTGCTCCCCTTCATTGTAATTCTTCTCATAAAACTGTGGAGAAGACTGTTAGGGCCCCTGACAGGTTGAGTGATGCAAGTGCCTCTTCTGTTAGAATGAGGGATAAATCCCCACGTCAGAAAGCTGTCTGTCAACAATCTGATGCAGCATGTACTACTCCGGTTAACCACAATAAGGTGGCTGTCAATGATGTATCTCCTGTTTGTATGGGTAATGAATATTTCAAACAGTCATGCAAGAGGAGCCTATCAAGGCCGAGCCTTTTGAAAGAACTCCGTGACTTGAGTCCACTTGAGCCTGAACCAACTTCAACCTCAAAGGATTTAAGGAGGAGGAGAGACATGACTGATGTTCGAGTGCTATATAGTCACCACTTAGATGAGGACATAATTAAGCAGCAGAAGAAGGTTTTGGGCCGACTAGGAGTTTCTGTTGCATCCTCGATGACAGATGCCACACACTTCGTAGCAGATCACTTTGTGCGAACAAGGAATATGTTAGAAGCTATAGCTTCTGGAAAACCAGTGGTGACACATTTATGGCTAGAGAGCTGTGGACAAGCTAATTGTTTCATTGACGAGAAAAATTACATACTAAGGGATACTAAAAAGGAGAAGCAATTTGGCTTTAGCATGCCAGCTTCGTTGGCATGTGCCTGCCAACATCCACTTTTAAAGGATCGGAAAGTCTTTATCACCCCAAATACAAAGCCTGGTAAAGAAATAATTTCGAGGCTGGTCAAAGCAGTCAATGGCCAGGCAGTGGAGAGAATTGGCAGATCTGCTTTGAAGGCTGATCAGATTCCAGATGATCTGTTGGTTCTATCTTGCGAAGAAGATTATGAAATTTGTGTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACAGCTCAGAGCTGGTTTTGAATGGGATTGTTACTCAGAAGCTGGAATTTGAAAGGTTAGTTGCATGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

1128

Amino Acids

124.93

Weight (kDa)

6.0

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTT107_BRCT_5 PF16770 916 - 1009 8.8e-10 Regulator of Ty1 transposition protein 107 BRCT domain
BRCT_2 PF16589 1033 - 1120 1.7e-17 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1828, 1892
AccB1I GGYRCC 3 cut(s) 1417, 1828, 1892
AccB7I CCANNNNNTGG 3 cut(s) 235, 250, 3193
AccII CGCG 1 cut(s) 2347
AccIII TCCGGA 1 cut(s) 1705
AciI CCGC 5 cut(s) 559, 575, 612, 1733, 2203
AclI AACGTT 1 cut(s) 2330
AclWI GGATC 7 cut(s) 44, 743, 1664, 1857, 2228, 2371, 3117
AcoI YGGCCR 1 cut(s) 3184
AcuI CTGAAG 4 cut(s) 522, 1482, 1560, 2049
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 2911
AfaI GTAC 3 cut(s) 1830, 1894, 2584
AfiI CCNNNNNNNGG 8 cut(s) 126, 235, 250, 1173, 1999, 2493, 2605, 3193
AflIII ACRYGT 1 cut(s) 2357
AhlI ACTAGT 1 cut(s) 1346
AjiI CACGTC 2 cut(s) 1913, 2546
AjnI CCWGG 6 cut(s) 52, 868, 1413, 1724, 3142, 3186
AjuI GAANNNNNNNTTGG 2 cut(s) 2825, 2857
Alw21I GWGCWC 2 cut(s) 1606, 2437
Alw26I GTCTC 6 cut(s) 233, 275, 600, 994, 1321, 2763
AlwI GGATC 7 cut(s) 44, 743, 1664, 1857, 2228, 2371, 3117
AlwNI CAGNNNCTG 3 cut(s) 250, 292, 3355
Ama87I CYCGRG 1 cut(s) 1632
Aor13HI TCCGGA 1 cut(s) 1705
ApaI GGGCCC 1 cut(s) 2488
ApeKI GCWGC 8 cut(s) 475, 548, 1457, 1784, 2009, 2576, 2827, 3305
Asp700I GAANNNNTTC 3 cut(s) 964, 1107, 1943
Asp718I GGTACC 2 cut(s) 1828, 1892
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 7 cut(s) 35, 561, 1004, 2216, 2484, 2485, 2845
AsuNHI GCTAGC 1 cut(s) 2072
AvaI CYCGRG 1 cut(s) 1632
BaeGI GKGCMC 1 cut(s) 2488
BaeI ACNNNNGTAYC 2 cut(s) 1783, 1816
BalI TGGCCA 1 cut(s) 3186
BanI GGYRCC 3 cut(s) 1417, 1828, 1892
BanII GRGCYC 1 cut(s) 2488
BbsI GAAGAC 4 cut(s) 50, 339, 813, 2480
Bbv12I GWGCWC 2 cut(s) 1606, 2437
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 8 cut(s) 487, 560, 1444, 1771, 1996, 2588, 2839, 3292
BccI CCATC 6 cut(s) 229, 749, 1300, 2150, 2245, 2254
BceAI ACGGC 1 cut(s) 808
BciT130I CCWGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
BciVI GTATCC 1 cut(s) 3025
BclI TGATCA 2 cut(s) 661, 3226
BcoDI GTCTC 6 cut(s) 233, 275, 600, 994, 1321, 2763
BcuI ACTAGT 1 cut(s) 1346
BfmI CTRYAG 2 cut(s) 2937, 3306
BfuI GTATCC 1 cut(s) 3025
BglII AGATCT 2 cut(s) 2183, 3209
Bme1390I CCNGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
BmeT110I CYCGRG 1 cut(s) 1632
BmgBI CACGTC 2 cut(s) 1913, 2546
BmgT120I GGNCC 7 cut(s) 35, 561, 1004, 2216, 2484, 2485, 2845
BmiI GGNNCC 8 cut(s) 1340, 1419, 1830, 1894, 2062, 2486, 2487, 2675
BmrFI CCNGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
BmtI GCTAGC 1 cut(s) 2076
BoxI GACNNNNGTC 1 cut(s) 2715
BpiI GAAGAC 4 cut(s) 50, 339, 813, 2480
BpmI CTGGAG 1 cut(s) 891
Bpu10I CCTNAGC 1 cut(s) 930
BpuEI CTTGAG 6 cut(s) 333, 846, 976, 1663, 2734, 2744
BsaBI GATNNNNATC 1 cut(s) 1077
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 233, 600
BsaJI CCNNGG 2 cut(s) 1172, 1413
BsaWI WCCGGW 3 cut(s) 178, 1705, 2590
BsaXI ACNNNNNCTCC 8 cut(s) 272, 302, 1687, 1717, 2847, 2877, 3294, 3324
Bsc4I CCNNNNNNNGG 8 cut(s) 126, 235, 250, 1173, 1999, 2493, 2605, 3193
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 255, 297, 2954
Bse3DI GCAATG 1 cut(s) 1905
Bse8I GATNNNNATC 1 cut(s) 1077
BseAI TCCGGA 1 cut(s) 1705
BseBI CCWGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
BseDI CCNNGG 2 cut(s) 1172, 1413
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 8 cut(s) 126, 235, 250, 1173, 1999, 2493, 2605, 3193
BseMI GCAATG 1 cut(s) 1905
BseMII CTCAG 7 cut(s) 98, 147, 921, 2201, 2232, 3333, 3362
BseNI ACTGG 3 cut(s) 255, 297, 2954
BseRI GAGGAG 8 cut(s) 395, 437, 947, 1825, 1997, 2686, 2776, 2779
BseSI GKGCMC 1 cut(s) 2488
BseXI GCAGC 8 cut(s) 487, 560, 1444, 1771, 1996, 2588, 2839, 3292
BseYI CCCAGC 2 cut(s) 69, 243
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 2347
BshNI GGYRCC 3 cut(s) 1417, 1828, 1892
BsiHKAI GWGCWC 2 cut(s) 1606, 2437
BsiHKCI CYCGRG 1 cut(s) 1632
BsiSI CCGG 4 cut(s) 179, 219, 1706, 2591
BslFI GGGAC 3 cut(s) 29, 287, 2185
BslI CCNNNNNNNGG 8 cut(s) 126, 235, 250, 1173, 1999, 2493, 2605, 3193
BsmAI GTCTC 6 cut(s) 233, 275, 600, 994, 1321, 2763
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 3 cut(s) 29, 287, 2185
Bso31I GGTCTC 2 cut(s) 233, 600
BsoBI CYCGRG 1 cut(s) 1632
Bsp120I GGGCCC 1 cut(s) 2484
Bsp1286I GDGCHC 3 cut(s) 1606, 2437, 2488
Bsp13I TCCGGA 1 cut(s) 1705
BspACI CCGC 5 cut(s) 559, 575, 612, 1733, 2203
BspCNI CTCAG 7 cut(s) 97, 148, 922, 2200, 2233, 3332, 3361
BspEI TCCGGA 1 cut(s) 1705
BspFNI CGCG 1 cut(s) 2347
BspHI TCATGA 2 cut(s) 778, 1402
BspLI GGNNCC 8 cut(s) 1340, 1419, 1830, 1894, 2062, 2486, 2487, 2675
BspMAI CTGCAG 1 cut(s) 3310
BspOI GCTAGC 1 cut(s) 2076
BspPI GGATC 7 cut(s) 44, 743, 1664, 1857, 2228, 2371, 3117
BspT107I GGYRCC 3 cut(s) 1417, 1828, 1892
BspTNI GGTCTC 2 cut(s) 233, 600
BsrDI GCAATG 1 cut(s) 1905
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 3 cut(s) 255, 297, 2954
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 1172, 1413
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
Bst6I CTCTTC 3 cut(s) 458, 2025, 2521
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1930
BstFNI CGCG 1 cut(s) 2347
BstHHI GCGC 1 cut(s) 440
BstMAI GTCTC 6 cut(s) 233, 275, 600, 994, 1321, 2763
BstNI CCWGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
BstNSI RCATGY 8 cut(s) 1724, 1784, 2114, 2361, 2583, 3067, 3084, 3381
BstPAI GACNNNNGTC 1 cut(s) 2715
BstSCI CCNGG 6 cut(s) 52, 868, 1413, 1724, 3142, 3186
BstSFI CTRYAG 2 cut(s) 2937, 3306
BstSLI GKGCMC 1 cut(s) 2488
BstUI CGCG 1 cut(s) 2347
BstV1I GCAGC 8 cut(s) 487, 560, 1444, 1771, 1996, 2588, 2839, 3292
BstV2I GAAGAC 4 cut(s) 50, 339, 813, 2480
BstX2I RGATCY 4 cut(s) 1862, 2183, 2363, 3209
BstXI CCANNNNNNTGG 1 cut(s) 1276
BstYI RGATCY 4 cut(s) 1862, 2183, 2363, 3209
BsuI GTATCC 1 cut(s) 3025
BtrI CACGTC 2 cut(s) 1913, 2546
BtsI GCAGTG 2 cut(s) 433, 3198
BtsIMutI CAGTG 9 cut(s) 153, 322, 328, 433, 595, 732, 1968, 2961, 3198
CaiI CAGNNNCTG 3 cut(s) 250, 292, 3355
CciI TCATGA 2 cut(s) 778, 1402
CfoI GCGC 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 7 cut(s) 35, 561, 1004, 2216, 2484, 2485, 2845
CseI GACGC 3 cut(s) 26, 292, 1140
Csp6I GTAC 3 cut(s) 1829, 1893, 2583
CspCI CAANNNNNGTGG 2 cut(s) 996, 1031
CviQI GTAC 3 cut(s) 1829, 1893, 2583
DraI TTTAAA 2 cut(s) 2335, 3105
DraIII CACNNNGTG 1 cut(s) 2911
EaeI YGGCCR 1 cut(s) 3184
Eam1104I CTCTTC 3 cut(s) 458, 2025, 2521
EarI CTCTTC 3 cut(s) 458, 2025, 2521
Eco24I GRGCYC 1 cut(s) 2488
Eco31I GGTCTC 2 cut(s) 233, 600
Eco57I CTGAAG 4 cut(s) 522, 1482, 1560, 2049
Eco88I CYCGRG 1 cut(s) 1632
EcoO109I RGGNCCY 2 cut(s) 2484, 2485
EcoRII CCWGG 6 cut(s) 52, 868, 1413, 1724, 3142, 3186
EcoT22I ATGCAT 3 cut(s) 193, 531, 1966
EcoT38I GRGCYC 1 cut(s) 2488
Esp3I CGTCTC 1 cut(s) 275
FalI AAGNNNNNCTT 2 cut(s) 2500, 2532
FaqI GGGAC 3 cut(s) 29, 287, 2185
FauI CCCGC 2 cut(s) 552, 2210
FauNDI CATATG 1 cut(s) 2022
FbaI TGATCA 2 cut(s) 661, 3226
FriOI GRGCYC 1 cut(s) 2488
GlaI GCGC 1 cut(s) 439
GsaI CCCAGC 2 cut(s) 73, 247
GsuI CTGGAG 1 cut(s) 891
HapII CCGG 4 cut(s) 179, 219, 1706, 2591
HgaI GACGC 3 cut(s) 26, 292, 1140
HhaI GCGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HincII GTYRAC 2 cut(s) 2564, 2596
HindII GTYRAC 2 cut(s) 2564, 2596
HindIII AAGCTT 2 cut(s) 1039, 2164
HpaI GTTAAC 1 cut(s) 2596
HpaII CCGG 4 cut(s) 179, 219, 1706, 2591
Hpy166II GTNNAC 6 cut(s) 418, 2564, 2596, 2720, 2987, 3313
Hpy8I GTNNAC 6 cut(s) 418, 2564, 2596, 2720, 2987, 3313
Hpy99I CGWCG 1 cut(s) 1917
HpyCH4IV ACGT 4 cut(s) 505, 1912, 2330, 2545
HpySE526I ACGT 4 cut(s) 505, 1912, 2330, 2545
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 1 cut(s) 438
Kpn2I TCCGGA 1 cut(s) 1705
KpnI GGTACC 2 cut(s) 1832, 1896
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Ksp22I TGATCA 2 cut(s) 661, 3226
KspAI GTTAAC 1 cut(s) 2596
LmnI GCTCC 5 cut(s) 628, 1382, 2440, 2673, 3302
Lsp1109I GCAGC 8 cut(s) 487, 560, 1444, 1771, 1996, 2588, 2839, 3292
MaeII ACGT 4 cut(s) 505, 1912, 2330, 2545
MfeI CAATTG 2 cut(s) 203, 1501
MflI RGATCY 4 cut(s) 1862, 2183, 2363, 3209
MhlI GDGCHC 3 cut(s) 1606, 2437, 2488
MlsI TGGCCA 1 cut(s) 3186
MluNI TGGCCA 1 cut(s) 3186
MlyI GAGTC 3 cut(s) 329, 1994, 2725
MmeI TCCRAC 2 cut(s) 1374, 2062
Mox20I TGGCCA 1 cut(s) 3186
Mph1103I ATGCAT 3 cut(s) 193, 531, 1966
MroI TCCGGA 1 cut(s) 1705
MroNI GCCGGC 1 cut(s) 218
MroXI GAANNNNTTC 3 cut(s) 964, 1107, 1943
MscI TGGCCA 1 cut(s) 3186
MslI CAYNNNNRTG 3 cut(s) 2115, 2808, 2968
Msp20I TGGCCA 1 cut(s) 3186
MspI CCGG 4 cut(s) 179, 219, 1706, 2591
MspR9I CCNGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
MunI CAATTG 2 cut(s) 203, 1501
MvaI CCWGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
MvnI CGCG 1 cut(s) 2347
NaeI GCCGGC 1 cut(s) 220
NdeI CATATG 1 cut(s) 2022
NgoMIV GCCGGC 1 cut(s) 218
NheI GCTAGC 1 cut(s) 2072
NlaIV GGNNCC 8 cut(s) 1340, 1419, 1830, 1894, 2062, 2486, 2487, 2675
NmeAIII GCCGAG 1 cut(s) 2712
NmuCI GTSAC 8 cut(s) 56, 317, 401, 1776, 1996, 2708, 2798, 2959
NsiI ATGCAT 3 cut(s) 193, 531, 1966
NspI RCATGY 8 cut(s) 1724, 1784, 2114, 2361, 2583, 3067, 3084, 3381
PaeI GCATGC 3 cut(s) 1724, 2114, 3067
PaeR7I CTCGAG 1 cut(s) 1632
PagI TCATGA 2 cut(s) 778, 1402
PciI ACATGT 1 cut(s) 2357
PdiI GCCGGC 1 cut(s) 220
PdmI GAANNNNTTC 3 cut(s) 964, 1107, 1943
PfeI GAWTC 9 cut(s) 857, 1265, 1286, 1628, 1637, 1688, 1815, 1939, 3232
PflMI CCANNNNNTGG 3 cut(s) 235, 250, 3193
PleI GAGTC 3 cut(s) 329, 1993, 2724
PpsI GAGTC 3 cut(s) 329, 1993, 2724
PscI ACATGT 1 cut(s) 2357
PshAI GACNNNNGTC 1 cut(s) 2715
Psp1406I AACGTT 1 cut(s) 2330
Psp6I CCWGG 6 cut(s) 52, 868, 1413, 1724, 3142, 3186
PspFI CCCAGC 2 cut(s) 69, 243
PspGI CCWGG 6 cut(s) 52, 868, 1413, 1724, 3142, 3186
PspN4I GGNNCC 8 cut(s) 1340, 1419, 1830, 1894, 2062, 2486, 2487, 2675
PspOMI GGGCCC 1 cut(s) 2484
PspPI GGNCC 7 cut(s) 35, 561, 1004, 2216, 2484, 2485, 2845
PstI CTGCAG 1 cut(s) 3310
PstNI CAGNNNCTG 3 cut(s) 250, 292, 3355
PsuI RGATCY 4 cut(s) 1862, 2183, 2363, 3209
RsaI GTAC 3 cut(s) 1830, 1894, 2584
RsaNI GTAC 3 cut(s) 1829, 1893, 2583
RseI CAYNNNNRTG 3 cut(s) 2115, 2808, 2968
Sau96I GGNCC 7 cut(s) 35, 561, 1004, 2216, 2484, 2485, 2845
SchI GAGTC 3 cut(s) 329, 1994, 2725
ScrFI CCNGG 6 cut(s) 54, 870, 1415, 1726, 3144, 3188
SduI GDGCHC 3 cut(s) 1606, 2437, 2488
SfcI CTRYAG 2 cut(s) 2937, 3306
Sfr274I CTCGAG 1 cut(s) 1632
SlaI CTCGAG 1 cut(s) 1632
SmiMI CAYNNNNRTG 3 cut(s) 2115, 2808, 2968
SmlI CTYRAG 7 cut(s) 348, 861, 991, 1632, 1678, 2713, 2723
SmoI CTYRAG 7 cut(s) 348, 861, 991, 1632, 1678, 2713, 2723
SpeI ACTAGT 1 cut(s) 1346
SphI GCATGC 3 cut(s) 1724, 2114, 3067
SsiI CCGC 5 cut(s) 559, 575, 612, 1733, 2203
SspI AATATT 1 cut(s) 2651
StyD4I CCNGG 6 cut(s) 52, 868, 1413, 1724, 3142, 3186
TaiI ACGT 4 cut(s) 508, 1915, 2333, 2548
TaqI TCGA 7 cut(s) 261, 1594, 1633, 1915, 2785, 2873, 3161
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 2582
TauI GCSGC 2 cut(s) 578, 1735
TfiI GAWTC 9 cut(s) 857, 1265, 1286, 1628, 1637, 1688, 1815, 1939, 3232
TscAI CASTG 9 cut(s) 160, 322, 328, 440, 595, 732, 1975, 2961, 3198
TseFI GTSAC 8 cut(s) 56, 317, 401, 1776, 1996, 2708, 2798, 2959
TseI GCWGC 8 cut(s) 475, 548, 1457, 1784, 2009, 2576, 2827, 3305
Tsp45I GTSAC 8 cut(s) 56, 317, 401, 1776, 1996, 2708, 2798, 2959
TspGWI ACGGA 5 cut(s) 1211, 1234, 1351, 2015, 2696
TspRI CASTG 9 cut(s) 160, 322, 328, 440, 595, 732, 1975, 2961, 3198
Van91I CCANNNNNTGG 3 cut(s) 235, 250, 3193
XceI RCATGY 8 cut(s) 1724, 1784, 2114, 2361, 2583, 3067, 3084, 3381
XhoI CTCGAG 1 cut(s) 1632
XmnI GAANNNNTTC 3 cut(s) 964, 1107, 1943
Zsp2I ATGCAT 3 cut(s) 193, 531, 1966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.