Rw4G019650

Regulator of Ty1 transposition protein 107 BRCT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007475
Physical Location & Seq
Reverse (-)
43093156 .. 43098656
5501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019650.1

Sequence Viewer

Length: 3471 bp
ATGGGTTCTCTTTGGGACGCCGATTATGAAATTGGGCCGATGAAGACCGATCCTGGCCACACCCAGCCCCTTGATACTCAGATTTCAACCCCTCCCCTATCTGATGAAAAGGCCAAAGGAGGGGATGCTGAAGAGTGTATGCAAGACACTGAGCCTTTTGATGATACCGTTCCGGCTGAAGATGCATTTGATACCCAACTGGTGTGTCTTGCCGGCGAAACCCAAGTGATGGATCTTGGCGGCGAGACCCAGCTACTGGATGATTTCGACTGCATTGGGGACATGGAGACGCAGTTACTGGATTTGGATGATCGGGTTGTCAGTGACAGTGAAGGGGAAGACTCGGATGCAACTCAAGTTTTAGATGTTGATGAGGATGTCTTGGAGGAGGTGGAAGTAACAAGAGGTGACGGTCAGTTAGTGGACGAGGAGAAAACTCACTGCGCTGGTATTTGCCAAGATAGCGAGAAGAGGCTGATGCAGCAAGCTAGTCATTTGGTCAATGAACAACGTAATGCAGGATATGTGCGTATGCATTTCACTTCAGTTCGTGCAGCATCTTTGCGGGCCTCTGGTCTAGCGGCTCGGAACAACAGTGGGTCTCGCTCTGTTCCATGCGGTAATCATTCTTTGGAGCAACTTGCAACCATAGGTGGAACAGAAGTCGATCAGGAAAATGATATGGGGAGAAATGATGATACAATTAAGAGTTCAAGGGTTGGTAGTTCAACAGTGAGAAAACTTTTTACTGACGATCCAGATGGTGAAAATGAGGGATTTCCTCATGACAGTAATAGTTTTGAAGAAGGAGAAGACTTGTTTCAGTTGCCGTCTTGTGATTTGGCAGGGTTAAGCTATGCTGATTCTCAAGAACCTGGAGAGTTATCACAGGCTAATGCTCTGAATTTTGTGGATAAGTTTCTCCAAGATAATGCTGAGGAGTTTGATAAAGAAGGTGATTGCAGAAAGAGTTCTAAGAAAAATTCAAAAGTTGTCTCAAGTGCAAAAGGGCCACAAACATTGGCGAAGAAAGTCAATGATATAAGCTTAGTTACAGATGCAGGCATTTATGAGTGGGATGATAATCGTGAGGATGAAGGAGGTGGTGAATTGTTTCGCCGAAAAAGGACAGACTTCTTTAGCGGTGGAAGTCATGGGTCAAAATCTGTTCCCCAACCTCGGAAGGCGAAAAGGAACAGAACGGATGAGCTGAATGATAACAAACGGAAATTGCAGGGAAAGAACAAGAAAATTGGTGTAGTTCATTCTGATTCCAAATTGTTGGTGCTGGATTCAAAAGCCCATGAGAAGATGGAAAGTGAAAATGAAATGAGACACAAACGGAACCTCACTAGTGAGTTTGACGAACAGTTTAATATCTGCTCCACTAGAGGACAGTTGGATGTTCATGATAAGACCCAGGTGCCTGAAATGCTAAATGTAGGTTTTGATACTCAAATAGCTGCTGAAGCTATGGAAGCCTTATTCAATGGTGAAGGAATTTCCAATTGTGAGGCCAATGATGCTATTCACAGAAACTCAACTGAAGGTTCAATGGGAGAAAAGACGAAGAATATAAGTGTGAAGAAACCCCATTCTCGAAAAAGAGCACGCCTTTCTGATGCAGGGGTTGATTCTCGAGAATCGCAACGAGCCAAGAAAACAAGGGGGGTTGATCCCTACTCAAGTAAAGATTCCTTGACAGCACCTCCGGAAAATTCTAAGCATGCCAGGAAGCCGCATGAAACTGCATTGGTGATAACAAAATCAAAGAAGCCCAAGTCACATGCTGCAAAACACGATAGTATCAGTCAGAGGAGAATCTTGGAGAGGGTACCTTCTGTTTTCATTGACCAAAGAACAGAAAGATCCAAGAAACAGAATTTACAACATGGTGGTACCTCTACACCCATTGCACGTCGAACTAGGCAATCTATGCTGGTGAATCAGTTCAATATAGCTGATAATGCATCCACTGATTGTGGAGAGGAGTCTAACCATGTCACGGAGGATGCTGCTGGTGTTCATATGGCTGAAGAGTTGAGTGCAAAATCTTCAAAACAGGGTTCCAATGAAGCTAGCAGGGTTGGAAAGACGAAGCAAAACCTATACGAGCATGCAGATGTTAATTTCAGAGCTGTTGGTAATGGGGTCAAATTGGATGGATTAAGCTTTCCTAGAGGACGAAGATCTCAGCGAAATTTGTCCCGCAAGGTTTATGGGCCTGATGACTTAGATGATCCATCTGAGCCATCTATTCAGCCAGAGAAATTTGGAAAATGTGGCACTAGGCACAAAAGGCCACAGGATGCTAGAGGCACTACTGTTGATAAAACGTTTAAAAGGGAAACACGATCTTCCACATGTGGATCTCTTGGAAATAAGAATTTGGAAGGAAATTTTGCACAGAAAAATTTAGACAAAGGAGGTTCTGGTGGTGCTCCCCTTCATTGTAATTCTTCTCATAAAACTGTGGAGAAGACTGTTAGGGCCCCTGACAGGTTGAGTGATGCAAGTGCCTCTTCTGTTAGAATGAGGGATAAATCCCCACGTCAGAAAGCTGTCTGTCAACAATCTGATGCAGCATGTACTACTCCGGTTAACCACAATAAGGTGGCTGTCAATGATGTATCTCCTGTTTGTATGGGTAATGAATATTTCAAACAGTCATGCAAGAGGAGCCTATCAAGGCCGAGCCTTTTGAAAGAACTCCGTGACTTGAGTCCACTTGAGCCTGAACCAACTTCAACCTCAAAGGATTTAAGGAGGAGGAGAGACATGACTGATGTTCGAGTGCTATATAGTCACCACTTAGATGAGGACATAATTAAGCAGCAGAAGAAGGTTTTGGGCCGACTAGGAGTTTCTGTTGCATCCTCGATGACAGATGCCACACACTTCATAGCAGATCACTTTGTGCGAACAAGGAATATGTTAGAAGCTATAGCTTCTGGAAAACCAGTGGTGACACATTTATGGCTAGAGAGCTGTGGACAAGCTAATTGTTTCATTGACGAGAAAAATTACATACTAAGGGATACTAAAAAGGAGAAGCAATTTGGCTTTAGCATGCCAGCTTCGTTGGCATGTGCCTGCCAACATCCACTTTTAAAGGATCGGAAAGTCTTTATCACCCCAAATACAAAGCCTGGTAAAGAAATAATTTCGAGGCTGGTCAAAGCAGTCAATGGCCAGGCAGTGGAGAGAATTGGCAGATCTGCTTTGAAGGCTGATCAGATTCCAGATGATCTGTTGGTTCTATCTTGCGAAGAAGATTATGAAATTTGTGTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACAGCTCAGAGCTGGTTTTGAATGGGATTGTTACTCAGAAGCTGGAATTTGAAAGACATCGCATTTTCACTGATCAAGTTAAGAAAACCCGGTCTACCATATGGTTGAGGAAAGATGGCAATAAGTTCCAGCCTGTGTCAAAAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

1156

Amino Acids

128.01

Weight (kDa)

6.2

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTT107_BRCT_5 PF16770 918 - 1011 5.7e-10 Regulator of Ty1 transposition protein 107 BRCT domain
BRCT_2 PF16589 1035 - 1122 1.6e-17 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1834, 1898
AccB1I GGYRCC 3 cut(s) 1423, 1834, 1898
AccB7I CCANNNNNTGG 3 cut(s) 229, 256, 3199
AccI GTMKAC 1 cut(s) 3413
AccIII TCCGGA 1 cut(s) 1711
AciI CCGC 7 cut(s) 240, 565, 581, 618, 1143, 1739, 2209
AclI AACGTT 1 cut(s) 2336
AclWI GGATC 8 cut(s) 44, 240, 749, 1670, 1863, 2234, 2377, 3123
AcoI YGGCCR 2 cut(s) 55, 3190
AcuI CTGAAG 6 cut(s) 150, 198, 528, 1488, 1566, 2055
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 2917
AfaI GTAC 3 cut(s) 1836, 1900, 2590
AfiI CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2499, 2611, 3199
AflIII ACRYGT 1 cut(s) 2363
AhlI ACTAGT 1 cut(s) 1352
AjiI CACGTC 2 cut(s) 1919, 2552
AjnI CCWGG 6 cut(s) 52, 874, 1419, 1730, 3148, 3192
AjuI GAANNNNNNNTTGG 2 cut(s) 2831, 2863
Alw21I GWGCWC 2 cut(s) 1612, 2443
Alw26I GTCTC 6 cut(s) 239, 281, 606, 1000, 1327, 2769
AlwI GGATC 8 cut(s) 44, 240, 749, 1670, 1863, 2234, 2377, 3123
AlwNI CAGNNNCTG 3 cut(s) 256, 298, 3361
Ama87I CYCGRG 1 cut(s) 1638
Aor13HI TCCGGA 1 cut(s) 1711
ApaI GGGCCC 1 cut(s) 2494
ApeKI GCWGC 8 cut(s) 481, 554, 1463, 1790, 2015, 2582, 2833, 3311
Asp700I GAANNNNTTC 3 cut(s) 970, 1113, 1949
Asp718I GGTACC 2 cut(s) 1834, 1898
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 7 cut(s) 35, 567, 1010, 2222, 2490, 2491, 2851
AsuC2I CCSGG 1 cut(s) 3409
AsuNHI GCTAGC 1 cut(s) 2078
AvaI CYCGRG 1 cut(s) 1638
BaeGI GKGCMC 1 cut(s) 2494
BaeI ACNNNNGTAYC 2 cut(s) 1789, 1822
BalI TGGCCA 2 cut(s) 57, 3192
BanI GGYRCC 3 cut(s) 1423, 1834, 1898
BanII GRGCYC 1 cut(s) 2494
BbsI GAAGAC 4 cut(s) 50, 345, 819, 2486
Bbv12I GWGCWC 2 cut(s) 1612, 2443
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2594, 2845, 3298
BccI CCATC 7 cut(s) 223, 755, 1306, 2156, 2251, 2260, 3428
BceAI ACGGC 1 cut(s) 814
BciT130I CCWGG 6 cut(s) 54, 876, 1421, 1732, 3150, 3194
BciVI GTATCC 1 cut(s) 3031
BclI TGATCA 2 cut(s) 3232, 3391
BcnI CCSGG 1 cut(s) 3409
BcoDI GTCTC 6 cut(s) 239, 281, 606, 1000, 1327, 2769
BcuI ACTAGT 1 cut(s) 1352
BfmI CTRYAG 2 cut(s) 2943, 3312
BfuI GTATCC 1 cut(s) 3031
BglII AGATCT 2 cut(s) 2189, 3215
Bme1390I CCNGG 7 cut(s) 54, 876, 1421, 1732, 3150, 3194, 3409
BmeT110I CYCGRG 1 cut(s) 1638
BmgBI CACGTC 2 cut(s) 1919, 2552
BmgT120I GGNCC 7 cut(s) 35, 567, 1010, 2222, 2490, 2491, 2851
BmiI GGNNCC 8 cut(s) 1346, 1425, 1836, 1900, 2068, 2492, 2493, 2681
BmrFI CCNGG 7 cut(s) 54, 876, 1421, 1732, 3150, 3194, 3409
BmtI GCTAGC 1 cut(s) 2082
BoxI GACNNNNGTC 1 cut(s) 2721
BpiI GAAGAC 4 cut(s) 50, 345, 819, 2486
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 936
BpuEI CTTGAG 6 cut(s) 339, 852, 982, 1669, 2740, 2750
BpuMI CCSGG 1 cut(s) 3409
BsaBI GATNNNNATC 1 cut(s) 1083
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 239, 606
BsaJI CCNNGG 2 cut(s) 1178, 1419
BsaWI WCCGGW 2 cut(s) 1711, 2596
BsaXI ACNNNNNCTCC 8 cut(s) 278, 308, 1693, 1723, 2853, 2883, 3300, 3330
Bsc4I CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2499, 2611, 3199
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 4 cut(s) 204, 261, 303, 2960
Bse3DI GCAATG 1 cut(s) 1911
Bse8I GATNNNNATC 1 cut(s) 1083
BseAI TCCGGA 1 cut(s) 1711
BseBI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3150, 3194
BseDI CCNNGG 2 cut(s) 1178, 1419
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2499, 2611, 3199
BseMI GCAATG 1 cut(s) 1911
BseMII CTCAG 7 cut(s) 92, 141, 927, 2207, 2238, 3339, 3368
BseNI ACTGG 4 cut(s) 204, 261, 303, 2960
BseRI GAGGAG 8 cut(s) 401, 443, 953, 1831, 2003, 2692, 2782, 2785
BseSI GKGCMC 1 cut(s) 2494
BseXI GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2594, 2845, 3298
BseYI CCCAGC 2 cut(s) 63, 249
BsgI GTGCAG 1 cut(s) 573
BshNI GGYRCC 3 cut(s) 1423, 1834, 1898
BsiHKAI GWGCWC 2 cut(s) 1612, 2443
BsiHKCI CYCGRG 1 cut(s) 1638
BsiSI CCGG 5 cut(s) 173, 213, 1712, 2597, 3409
BslFI GGGAC 3 cut(s) 29, 293, 2191
BslI CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2499, 2611, 3199
BsmAI GTCTC 6 cut(s) 239, 281, 606, 1000, 1327, 2769
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 3 cut(s) 29, 293, 2191
Bso31I GGTCTC 2 cut(s) 239, 606
BsoBI CYCGRG 1 cut(s) 1638
Bsp120I GGGCCC 1 cut(s) 2490
Bsp1286I GDGCHC 3 cut(s) 1612, 2443, 2494
Bsp13I TCCGGA 1 cut(s) 1711
BspACI CCGC 7 cut(s) 240, 565, 581, 618, 1143, 1739, 2209
BspCNI CTCAG 7 cut(s) 91, 142, 928, 2206, 2239, 3338, 3367
BspEI TCCGGA 1 cut(s) 1711
BspHI TCATGA 2 cut(s) 784, 1408
BspLI GGNNCC 8 cut(s) 1346, 1425, 1836, 1900, 2068, 2492, 2493, 2681
BspMAI CTGCAG 1 cut(s) 3316
BspOI GCTAGC 1 cut(s) 2082
BspPI GGATC 8 cut(s) 44, 240, 749, 1670, 1863, 2234, 2377, 3123
BspT107I GGYRCC 3 cut(s) 1423, 1834, 1898
BspTNI GGTCTC 2 cut(s) 239, 606
BsrDI GCAATG 1 cut(s) 1911
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 4 cut(s) 204, 261, 303, 2960
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 1178, 1419
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3150, 3194
Bst6I CTCTTC 4 cut(s) 126, 464, 2031, 2527
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1936
BstHHI GCGC 1 cut(s) 446
BstMAI GTCTC 6 cut(s) 239, 281, 606, 1000, 1327, 2769
BstNI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3150, 3194
BstNSI RCATGY 7 cut(s) 1730, 1790, 2120, 2367, 2589, 3073, 3090
BstPAI GACNNNNGTC 1 cut(s) 2721
BstSCI CCNGG 7 cut(s) 52, 874, 1419, 1730, 3148, 3192, 3407
BstSFI CTRYAG 2 cut(s) 2943, 3312
BstSLI GKGCMC 1 cut(s) 2494
BstV1I GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2594, 2845, 3298
BstV2I GAAGAC 4 cut(s) 50, 345, 819, 2486
BstX2I RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3215
BstXI CCANNNNNNTGG 1 cut(s) 1282
BstYI RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3215
BsuI GTATCC 1 cut(s) 3031
BtgZI GCGATG 1 cut(s) 3362
BtrI CACGTC 2 cut(s) 1919, 2552
BtsI GCAGTG 2 cut(s) 439, 3204
CaiI CAGNNNCTG 3 cut(s) 256, 298, 3361
CciI TCATGA 2 cut(s) 784, 1408
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 7 cut(s) 35, 567, 1010, 2222, 2490, 2491, 2851
CseI GACGC 2 cut(s) 26, 298
Csp6I GTAC 3 cut(s) 1835, 1899, 2589
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviQI GTAC 3 cut(s) 1835, 1899, 2589
DraI TTTAAA 2 cut(s) 2341, 3111
DraIII CACNNNGTG 1 cut(s) 2917
EaeI YGGCCR 2 cut(s) 55, 3190
Eam1104I CTCTTC 4 cut(s) 126, 464, 2031, 2527
EarI CTCTTC 4 cut(s) 126, 464, 2031, 2527
Eco24I GRGCYC 1 cut(s) 2494
Eco31I GGTCTC 2 cut(s) 239, 606
Eco57I CTGAAG 6 cut(s) 150, 198, 528, 1488, 1566, 2055
Eco88I CYCGRG 1 cut(s) 1638
EcoO109I RGGNCCY 2 cut(s) 2490, 2491
EcoRII CCWGG 6 cut(s) 52, 874, 1419, 1730, 3148, 3192
EcoT22I ATGCAT 3 cut(s) 187, 537, 1972
EcoT38I GRGCYC 1 cut(s) 2494
Esp3I CGTCTC 1 cut(s) 281
FalI AAGNNNNNCTT 2 cut(s) 2506, 2538
FaqI GGGAC 3 cut(s) 29, 293, 2191
FauI CCCGC 2 cut(s) 558, 2216
FauNDI CATATG 2 cut(s) 2028, 3419
FbaI TGATCA 2 cut(s) 3232, 3391
FblI GTMKAC 1 cut(s) 3413
FriOI GRGCYC 1 cut(s) 2494
GlaI GCGC 1 cut(s) 445
GsaI CCCAGC 2 cut(s) 67, 253
GsuI CTGGAG 1 cut(s) 897
HapII CCGG 5 cut(s) 173, 213, 1712, 2597, 3409
HgaI GACGC 2 cut(s) 26, 298
HhaI GCGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HincII GTYRAC 2 cut(s) 2570, 2602
HindII GTYRAC 2 cut(s) 2570, 2602
HindIII AAGCTT 2 cut(s) 1045, 2170
HpaI GTTAAC 1 cut(s) 2602
HpaII CCGG 5 cut(s) 173, 213, 1712, 2597, 3409
Hpy166II GTNNAC 7 cut(s) 424, 2570, 2602, 2726, 2993, 3319, 3414
Hpy8I GTNNAC 7 cut(s) 424, 2570, 2602, 2726, 2993, 3319, 3414
Hpy99I CGWCG 1 cut(s) 1923
HpyCH4IV ACGT 4 cut(s) 511, 1918, 2336, 2551
HpySE526I ACGT 4 cut(s) 511, 1918, 2336, 2551
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 1 cut(s) 444
Kpn2I TCCGGA 1 cut(s) 1711
KpnI GGTACC 2 cut(s) 1838, 1902
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 3232, 3391
KspAI GTTAAC 1 cut(s) 2602
LmnI GCTCC 5 cut(s) 634, 1388, 2446, 2679, 3308
Lsp1109I GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2594, 2845, 3298
MaeII ACGT 4 cut(s) 511, 1918, 2336, 2551
MfeI CAATTG 1 cut(s) 1507
MflI RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3215
MhlI GDGCHC 3 cut(s) 1612, 2443, 2494
MlsI TGGCCA 2 cut(s) 57, 3192
MluNI TGGCCA 2 cut(s) 57, 3192
MlyI GAGTC 3 cut(s) 335, 2000, 2731
MmeI TCCRAC 2 cut(s) 1380, 2068
Mox20I TGGCCA 2 cut(s) 57, 3192
Mph1103I ATGCAT 3 cut(s) 187, 537, 1972
MroI TCCGGA 1 cut(s) 1711
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 3 cut(s) 970, 1113, 1949
MscI TGGCCA 2 cut(s) 57, 3192
MslI CAYNNNNRTG 3 cut(s) 2121, 2814, 2974
Msp20I TGGCCA 2 cut(s) 57, 3192
MspI CCGG 5 cut(s) 173, 213, 1712, 2597, 3409
MspR9I CCNGG 7 cut(s) 54, 876, 1421, 1732, 3150, 3194, 3409
MunI CAATTG 1 cut(s) 1507
MvaI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3150, 3194
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 3409
NdeI CATATG 2 cut(s) 2028, 3419
NgoMIV GCCGGC 1 cut(s) 212
NheI GCTAGC 1 cut(s) 2078
NlaIV GGNNCC 8 cut(s) 1346, 1425, 1836, 1900, 2068, 2492, 2493, 2681
NmeAIII GCCGAG 1 cut(s) 2718
NmuCI GTSAC 7 cut(s) 323, 407, 1782, 2002, 2714, 2804, 2965
NsiI ATGCAT 3 cut(s) 187, 537, 1972
NspI RCATGY 7 cut(s) 1730, 1790, 2120, 2367, 2589, 3073, 3090
PaeI GCATGC 3 cut(s) 1730, 2120, 3073
PaeR7I CTCGAG 1 cut(s) 1638
PagI TCATGA 2 cut(s) 784, 1408
PciI ACATGT 1 cut(s) 2363
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 3 cut(s) 970, 1113, 1949
PfeI GAWTC 9 cut(s) 863, 1271, 1292, 1634, 1643, 1694, 1821, 1945, 3238
PflMI CCANNNNNTGG 3 cut(s) 229, 256, 3199
PleI GAGTC 3 cut(s) 335, 1999, 2730
PpsI GAGTC 3 cut(s) 335, 1999, 2730
PscI ACATGT 1 cut(s) 2363
PshAI GACNNNNGTC 1 cut(s) 2721
Psp1406I AACGTT 1 cut(s) 2336
Psp6I CCWGG 6 cut(s) 52, 874, 1419, 1730, 3148, 3192
PspFI CCCAGC 2 cut(s) 63, 249
PspGI CCWGG 6 cut(s) 52, 874, 1419, 1730, 3148, 3192
PspN4I GGNNCC 8 cut(s) 1346, 1425, 1836, 1900, 2068, 2492, 2493, 2681
PspOMI GGGCCC 1 cut(s) 2490
PspPI GGNCC 7 cut(s) 35, 567, 1010, 2222, 2490, 2491, 2851
PstI CTGCAG 1 cut(s) 3316
PstNI CAGNNNCTG 3 cut(s) 256, 298, 3361
PsuI RGATCY 5 cut(s) 232, 1868, 2189, 2369, 3215
RsaI GTAC 3 cut(s) 1836, 1900, 2590
RsaNI GTAC 3 cut(s) 1835, 1899, 2589
RseI CAYNNNNRTG 3 cut(s) 2121, 2814, 2974
Sau96I GGNCC 7 cut(s) 35, 567, 1010, 2222, 2490, 2491, 2851
SchI GAGTC 3 cut(s) 335, 2000, 2731
ScrFI CCNGG 7 cut(s) 54, 876, 1421, 1732, 3150, 3194, 3409
SduI GDGCHC 3 cut(s) 1612, 2443, 2494
SfcI CTRYAG 2 cut(s) 2943, 3312
Sfr274I CTCGAG 1 cut(s) 1638
SlaI CTCGAG 1 cut(s) 1638
SmiMI CAYNNNNRTG 3 cut(s) 2121, 2814, 2974
SmlI CTYRAG 7 cut(s) 354, 867, 997, 1638, 1684, 2719, 2729
SmoI CTYRAG 7 cut(s) 354, 867, 997, 1638, 1684, 2719, 2729
SpeI ACTAGT 1 cut(s) 1352
SphI GCATGC 3 cut(s) 1730, 2120, 3073
SsiI CCGC 7 cut(s) 240, 565, 581, 618, 1143, 1739, 2209
SspI AATATT 1 cut(s) 2657
StyD4I CCNGG 7 cut(s) 52, 874, 1419, 1730, 3148, 3192, 3407
TaiI ACGT 4 cut(s) 514, 1921, 2339, 2554
TaqI TCGA 8 cut(s) 267, 666, 1600, 1639, 1921, 2791, 2879, 3167
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 2588
TauI GCSGC 3 cut(s) 243, 584, 1741
TfiI GAWTC 9 cut(s) 863, 1271, 1292, 1634, 1643, 1694, 1821, 1945, 3238
TseFI GTSAC 7 cut(s) 323, 407, 1782, 2002, 2714, 2804, 2965
TseI GCWGC 8 cut(s) 481, 554, 1463, 1790, 2015, 2582, 2833, 3311
Tsp45I GTSAC 7 cut(s) 323, 407, 1782, 2002, 2714, 2804, 2965
TspGWI ACGGA 5 cut(s) 1217, 1240, 1357, 2021, 2702
Van91I CCANNNNNTGG 3 cut(s) 229, 256, 3199
XceI RCATGY 7 cut(s) 1730, 1790, 2120, 2367, 2589, 3073, 3090
XhoI CTCGAG 1 cut(s) 1638
XmiI GTMKAC 1 cut(s) 3413
XmnI GAANNNNTTC 3 cut(s) 970, 1113, 1949
Zsp2I ATGCAT 3 cut(s) 187, 537, 1972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.