Rh4BG229800

Regulator of Ty1 transposition protein 107 BRCT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007475
Physical Location & Seq
Reverse (-)
39446096 .. 39451542
5447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG229800.1

Sequence Viewer

Length: 3462 bp
ATGGGTTCTCTTTGGGACGCCGATTATGAAATTGGGCCGATGAAGACCGATCCTGGCCACACCCAGCCCCTTGATACTCAGATTTTAACTCCTCCCCTTTCTGATGAAAAGGCCAAAGGAGGGGATGCTGATGAGTGTATGCAAGACACTGAGCCTTTTGATGATACCGTTCCGGTTGAAGATGCATTTGACACCCAAGTGGTGTGTCTTGCCGGCGAAACCCAAGTGATGGATCTTGGCGGTGAAACCCAGCTGTTGGATGATTTCGACTGCACTGGGGACATGGAGACGCAGTTACTGGATTTGGATGATCGAGTTGTCAGTGACAGTGAAGGGGAAGACTCGGATGCAACTCAAGTTTTAGATGTTGATGAGGATGTCTCGGAGGAGGTGTCCATAACAAGAGGTGACGGTCAGTTAGTGGACGAGGAGAAAACTCACTGCGCTGGTATTTGCCAAGATAGCGAGAAGAGGCTGATGCAGCAAGCTAGTCATTTGGTCAATGAACAACGTAATGCAGGATATGTGCGTATGCATTTCACTTCAGTTCGTGCAGCATCTTTGCGGGCCTCTGGTCTAGCGGCTCGGAACAACAGTGGGTCTCGTTCTGTTCCATGCGGTAATCATTCTTTGGAGCAACTTGCAACCATAGGTGGAACGGAAGTCGATCAGGAAAATGATATGGGGAGAAATGATGATACAATTAAGAGTTCAAGGGTTGGTAGTTCAACAGTGAGAAAACTTTTTACTGACGATCCAGATGGTGAAAATGAGGGATTTCCTCATGACAGTAATAGTTTTGAAGAAGGAGAAGACTTGCTTCAGTTGCCTTCTTGTGATTTGGCAGGGTTAAGCTATGCTGATTCTCAAGAACCTGGAGAGTTATCACAGGCTACTGCTCTGAATTTTGTGGATAAGTTTCTCCAAGATAATGCTGAGGAGTTTGATAAAGAAGGTGATTGCAGAAAGAGTTCTAAGAAAAATTCAAAAGTTGTCTCAAGTGCAAAAGGGCCACAAACATTGGCGAAGAAAGTCAATGATATAAGCTTAGTTACAGATGCAGGCATTTATGAGTGGGATGATAATCGTGAGGATGAAGGAGGTGGTGAATTGTTTCGCCGAAAAAGGACAGACTTCTTTAGTGGTGGAAGTCATGGGTCAAAATCTGTTCCCCAACCTCGGAAGGCGAAAAGGAACAGAACGGATGAGCTGAATGATAACAAACGGAAATTGCAGGGAAAGAACAAGAAAATTGGTGTAGTTCATTCTGATTCCAAATTGTTGGTGCTGGATTCAAAAGCCCATGAGAAGATGGAAAGTGAAGATGAAATGAGACACAAACGGAACCTCACTAGTGAGTTTGACGAACAGTTTAATATCTGCTCCACCAGAGGACAGTTGGATGTTCATGATAAGACCCAGGTGCCTGAAATGCTAAATGTAGGTTTTGATACTCAAATAGCTGCTGAAGCTATGGAAGCCTTATTCAACGGTGAAGGAATTTCCAATTGTGAGGCTAACGATGCTATTCACAGAAACTCACCTGAAGGTTCAATGGGAGAAAAGATGAAGAATATAAGTGTGAAGAAACCCCATTCTCGAAAAAGAGCACGCCTTTCTGATGCAGGGGTTGATTCTCGAGAATCCCAACAAGCCAAGAAAACAAGGAGGGTTGATCCCTACTCAAGTAACGATTCCTTGACAGCACCTCCGGAAAATTCTAAGAATGCCAGGAAGCCGCATGAAACTGCATTGGTGATAACAAAATCAAAGAAGCCCAAGTCACATGCTGCAAAACACGATAGTATCAGTCAGAGGAGAATCTTGGAGAGAGTACCTTCTGTTTCCATTGACCAAAGAACAGAAAGATCCAAGAAACAGAATTTACAACATGGTGGTACCTCTACACCCATTGCACGTCGAACTAGGCAATCTATGCTGGTGAATCAGTTCAATATAGCTGATAATGCATCCACTGATTGTGGAGAGGAGTCTAACCATGTGACGGAGGATGCTGCTGGTGTTCATATGGCTGAAGAGTTGAGTGCAAAATCTTCAAAACAGGGTCCCAATGAAGCTAGCAGGGTTGGAAAGACGAAGCAAAACCAATATGAGCATGCAGATGTTAATTTCAGAGCTGTTGGTAATGGGGTCAAATTGGATGGATTAAGCTTTCCTAGAGGACGAAGATCTCAGCGAAATTTGTCCGGCAAGGTTTATGGGCCTGATGACTTAGATGATCCATCTATTCAGCCAGAGAAATTTGGAAAATGTGGCACTAGGCACAAAAGGCCACAGGATGCTAGAGGCACTACTGTTGATAAAACGTTTAAAAGGGAAACGCGATCTTCCACATGTGGATCTCTTGGAAATAAGAATTTGAAAGGAAATTTTGCACAGAAAAATTTAGACAAAGGAGGTTCTGGTGGTGCTCCCCTTCATTGTAATTCTTCTCATAAAACTGTGGAGAAGACTGTTAGGGCCCCTGACAGGTTGAGTGATGCAAGTGCCTCTTCTGTTAGAATGAGGGATAAATCCCCACGTCAGAAAGCTGTCTGTCAACAATCTGATGCAGCATGTACTACTCCGGTTAACCACAATAAGGTGGCTGTCAATGATGTATCTCCTGTTTGTATGGGTAATGAATATTTCAAACAGTCATGCAAGAGGAGCCTATCAAGGCCGAGCCTTTTGAAAGAACTCCGTGACTTGAGTCCACTTGAGCCTGAACCAACTTCAACCTCAAAGGATTTAAGGAGGAGGAGAGACATGACTGATGTTCGAGTGCTATATAGTCACCACTTAGATGAGGACATAATTAAGCAGCAGAAGAAGATTTTGGGCCGACTAGGAGTTTCTGTTGCATCCTCGATGACAGATGCCACACACTTCATAGCAGATCACTTTGTGCGAACAAGGAATATGTTAGAAGCTATAGCTTCTGGAAAACCAGTGGTGACACATTTATGGCTAGAGAGCTGTGGACAAGCTAATTGTTTCATTGACGAGAAAAATTACATACTAAGGGATACTAAAAAGGAGAAGCAATTTGGCTTTAGCATGCCAGCTTCGTTGGCATGTGCCTGCCAACATCCACTTTTAAAGGATCGGAAAGTCTTTATCACCCCAAATACAAAGCCTGGTAAAGAAATAATTTCGAGTCTGGTCAAAGCAGTCAATGGCCAGGCAGTGGAGAGAATTGGCAGATCTGCTTTGAAGGCTGATCAGATTCCAGATGATCTGTTGGTTCTATCTTGCGAAGAAGATTATGAAATTTGTGTGCCTTTACTTGAAAAAGGAGCTGCAGTTTACAGCTCAGAGCTGGTTTTGAATGGGATTGTTACTCAGAAGCTGGAATTTGAAAGACATCGCATTTTCACTGATCAAGTTAAGAAAACCCGGTCTACCATATGGTTGAGGAAAGATGGCAATAAGTTCCAGCCTGTGTCCAAAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000414 GO:0000416 GO:0000726 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030330 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034708 GO:0034968 GO:0035065 GO:0035066 GO:0035097 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043414 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045191 GO:0045830 GO:0045893 GO:0045911 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051249 GO:0051251 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072331 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901983 GO:1901985 GO:1902275 GO:1902494 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000142 GO:2000144 GO:2000756 GO:2000758 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

1153

Amino Acids

127.48

Weight (kDa)

6.18

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTT107_BRCT_5 PF16770 915 - 1008 2.8e-10 Regulator of Ty1 transposition protein 107 BRCT domain
BRCT_2 PF16589 1032 - 1119 1.9e-17 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1898
AccB1I GGYRCC 2 cut(s) 1423, 1898
AccB7I CCANNNNNTGG 3 cut(s) 229, 256, 3190
AccI GTMKAC 1 cut(s) 3404
AccII CGCG 1 cut(s) 2344
AccIII TCCGGA 1 cut(s) 1711
AciI CCGC 5 cut(s) 240, 565, 581, 618, 1739
AclI AACGTT 1 cut(s) 2327
AclWI GGATC 8 cut(s) 44, 240, 749, 1670, 1863, 2234, 2368, 3114
AcoI YGGCCR 2 cut(s) 55, 3181
AcuI CTGAAG 5 cut(s) 528, 806, 1488, 1566, 2055
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 2908
AfaI GTAC 3 cut(s) 1836, 1900, 2581
AfiI CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2490, 2602, 3190
AflIII ACRYGT 1 cut(s) 2354
AhlI ACTAGT 1 cut(s) 1352
AjiI CACGTC 2 cut(s) 1919, 2543
AjnI CCWGG 6 cut(s) 52, 874, 1419, 1730, 3139, 3183
AjuI GAANNNNNNNTTGG 2 cut(s) 2822, 2854
AleI CACNNNNGTG 1 cut(s) 197
Alw21I GWGCWC 2 cut(s) 1612, 2434
Alw26I GTCTC 6 cut(s) 281, 385, 606, 1000, 1327, 2760
AlwI GGATC 8 cut(s) 44, 240, 749, 1670, 1863, 2234, 2368, 3114
AlwNI CAGNNNCTG 2 cut(s) 298, 3352
Ama87I CYCGRG 1 cut(s) 1638
Aor13HI TCCGGA 1 cut(s) 1711
ApaI GGGCCC 1 cut(s) 2485
ApeKI GCWGC 8 cut(s) 481, 554, 1463, 1790, 2015, 2573, 2824, 3302
Asp700I GAANNNNTTC 3 cut(s) 970, 1113, 1949
Asp718I GGTACC 1 cut(s) 1898
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 8 cut(s) 35, 567, 1010, 2066, 2222, 2481, 2482, 2842
AsuC2I CCSGG 1 cut(s) 3400
AsuNHI GCTAGC 1 cut(s) 2078
AvaI CYCGRG 1 cut(s) 1638
AvaII GGWCC 1 cut(s) 2066
BaeGI GKGCMC 1 cut(s) 2485
BaeI ACNNNNGTAYC 2 cut(s) 1789, 1822
BalI TGGCCA 2 cut(s) 57, 3183
BanI GGYRCC 2 cut(s) 1423, 1898
BanII GRGCYC 1 cut(s) 2485
BbsI GAAGAC 4 cut(s) 50, 345, 819, 2477
Bbv12I GWGCWC 2 cut(s) 1612, 2434
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2585, 2836, 3289
BccI CCATC 6 cut(s) 223, 755, 1306, 2156, 2251, 3419
BciT130I CCWGG 6 cut(s) 54, 876, 1421, 1732, 3141, 3185
BciVI GTATCC 1 cut(s) 3022
BclI TGATCA 2 cut(s) 3223, 3382
BcnI CCSGG 1 cut(s) 3400
BcoDI GTCTC 6 cut(s) 281, 385, 606, 1000, 1327, 2760
BcuI ACTAGT 1 cut(s) 1352
BfmI CTRYAG 2 cut(s) 2934, 3303
BfuI GTATCC 1 cut(s) 3022
BglII AGATCT 2 cut(s) 2189, 3206
Bme1390I CCNGG 7 cut(s) 54, 876, 1421, 1732, 3141, 3185, 3400
Bme18I GGWCC 1 cut(s) 2066
BmeT110I CYCGRG 1 cut(s) 1638
BmgBI CACGTC 2 cut(s) 1919, 2543
BmgT120I GGNCC 8 cut(s) 35, 567, 1010, 2066, 2222, 2481, 2482, 2842
BmiI GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2483, 2484, 2672
BmrFI CCNGG 7 cut(s) 54, 876, 1421, 1732, 3141, 3185, 3400
BmrI ACTGGG 1 cut(s) 285
BmtI GCTAGC 1 cut(s) 2082
BmuI ACTGGG 1 cut(s) 285
BoxI GACNNNNGTC 1 cut(s) 2712
BpiI GAAGAC 4 cut(s) 50, 345, 819, 2477
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 936
BpuEI CTTGAG 6 cut(s) 339, 852, 982, 1669, 2731, 2741
BpuMI CCSGG 1 cut(s) 3400
BsaBI GATNNNNATC 1 cut(s) 1083
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 1178, 1419
BsaWI WCCGGW 3 cut(s) 172, 1711, 2587
Bsc4I CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2490, 2602, 3190
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 3 cut(s) 280, 303, 2951
Bse3DI GCAATG 1 cut(s) 1911
Bse8I GATNNNNATC 1 cut(s) 1083
BseAI TCCGGA 1 cut(s) 1711
BseBI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3141, 3185
BseDI CCNNGG 2 cut(s) 1178, 1419
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2490, 2602, 3190
BseMI GCAATG 1 cut(s) 1911
BseMII CTCAG 6 cut(s) 92, 141, 927, 2207, 3330, 3359
BseNI ACTGG 3 cut(s) 280, 303, 2951
BseRI GAGGAG 9 cut(s) 81, 401, 443, 953, 1831, 2003, 2683, 2773, 2776
BseSI GKGCMC 1 cut(s) 2485
BseXI GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2585, 2836, 3289
BseYI CCCAGC 2 cut(s) 63, 249
BsgI GTGCAG 2 cut(s) 256, 573
Bsh1236I CGCG 1 cut(s) 2344
BshNI GGYRCC 2 cut(s) 1423, 1898
BsiHKAI GWGCWC 2 cut(s) 1612, 2434
BsiHKCI CYCGRG 1 cut(s) 1638
BsiSI CCGG 6 cut(s) 173, 213, 1712, 2208, 2588, 3400
BslFI GGGAC 3 cut(s) 29, 293, 2052
BslI CCNNNNNNNGG 8 cut(s) 120, 229, 256, 1179, 2005, 2490, 2602, 3190
BsmAI GTCTC 6 cut(s) 281, 385, 606, 1000, 1327, 2760
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 3 cut(s) 29, 293, 2052
BsmI GAATGC 1 cut(s) 1732
Bso31I GGTCTC 1 cut(s) 606
BsoBI CYCGRG 1 cut(s) 1638
Bsp120I GGGCCC 1 cut(s) 2481
Bsp1286I GDGCHC 3 cut(s) 1612, 2434, 2485
Bsp13I TCCGGA 1 cut(s) 1711
BspACI CCGC 5 cut(s) 240, 565, 581, 618, 1739
BspCNI CTCAG 6 cut(s) 91, 142, 928, 2206, 3329, 3358
BspEI TCCGGA 1 cut(s) 1711
BspFNI CGCG 1 cut(s) 2344
BspHI TCATGA 2 cut(s) 784, 1408
BspLI GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2483, 2484, 2672
BspMAI CTGCAG 1 cut(s) 3307
BspOI GCTAGC 1 cut(s) 2082
BspPI GGATC 8 cut(s) 44, 240, 749, 1670, 1863, 2234, 2368, 3114
BspT107I GGYRCC 2 cut(s) 1423, 1898
BspTNI GGTCTC 1 cut(s) 606
BsrDI GCAATG 1 cut(s) 1911
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 3 cut(s) 280, 303, 2951
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 1178, 1419
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3141, 3185
Bst6I CTCTTC 3 cut(s) 464, 2031, 2518
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 1936
BstFNI CGCG 1 cut(s) 2344
BstHHI GCGC 1 cut(s) 446
BstMAI GTCTC 6 cut(s) 281, 385, 606, 1000, 1327, 2760
BstNI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3141, 3185
BstNSI RCATGY 6 cut(s) 1790, 2120, 2358, 2580, 3064, 3081
BstPAI GACNNNNGTC 1 cut(s) 2712
BstSCI CCNGG 7 cut(s) 52, 874, 1419, 1730, 3139, 3183, 3398
BstSFI CTRYAG 2 cut(s) 2934, 3303
BstSLI GKGCMC 1 cut(s) 2485
BstUI CGCG 1 cut(s) 2344
BstV1I GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2585, 2836, 3289
BstV2I GAAGAC 4 cut(s) 50, 345, 819, 2477
BstX2I RGATCY 5 cut(s) 232, 1868, 2189, 2360, 3206
BstXI CCANNNNNNTGG 1 cut(s) 1282
BstYI RGATCY 5 cut(s) 232, 1868, 2189, 2360, 3206
BsuI GTATCC 1 cut(s) 3022
BtgZI GCGATG 1 cut(s) 3353
BtrI CACGTC 2 cut(s) 1919, 2543
BtsI GCAGTG 2 cut(s) 439, 3195
CaiI CAGNNNCTG 2 cut(s) 298, 3352
CciI TCATGA 2 cut(s) 784, 1408
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 8 cut(s) 35, 567, 1010, 2066, 2222, 2481, 2482, 2842
CseI GACGC 2 cut(s) 26, 298
Csp6I GTAC 3 cut(s) 1835, 1899, 2580
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviQI GTAC 3 cut(s) 1835, 1899, 2580
DraI TTTAAA 2 cut(s) 2332, 3102
DraIII CACNNNGTG 1 cut(s) 2908
EaeI YGGCCR 2 cut(s) 55, 3181
Eam1104I CTCTTC 3 cut(s) 464, 2031, 2518
EarI CTCTTC 3 cut(s) 464, 2031, 2518
Eco24I GRGCYC 1 cut(s) 2485
Eco31I GGTCTC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 2066
Eco57I CTGAAG 5 cut(s) 528, 806, 1488, 1566, 2055
Eco88I CYCGRG 1 cut(s) 1638
EcoO109I RGGNCCY 3 cut(s) 2066, 2481, 2482
EcoRII CCWGG 6 cut(s) 52, 874, 1419, 1730, 3139, 3183
EcoT22I ATGCAT 3 cut(s) 187, 537, 1972
EcoT38I GRGCYC 1 cut(s) 2485
Esp3I CGTCTC 1 cut(s) 281
FalI AAGNNNNNCTT 4 cut(s) 804, 836, 2497, 2529
FaqI GGGAC 3 cut(s) 29, 293, 2052
FauI CCCGC 1 cut(s) 558
FauNDI CATATG 2 cut(s) 2028, 3410
FbaI TGATCA 2 cut(s) 3223, 3382
FblI GTMKAC 1 cut(s) 3404
FriOI GRGCYC 1 cut(s) 2485
GlaI GCGC 1 cut(s) 445
GsaI CCCAGC 2 cut(s) 67, 253
GsuI CTGGAG 1 cut(s) 897
HapII CCGG 6 cut(s) 173, 213, 1712, 2208, 2588, 3400
HgaI GACGC 2 cut(s) 26, 298
HhaI GCGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HincII GTYRAC 2 cut(s) 2561, 2593
HindII GTYRAC 2 cut(s) 2561, 2593
HindIII AAGCTT 2 cut(s) 1045, 2170
HpaI GTTAAC 1 cut(s) 2593
HpaII CCGG 6 cut(s) 173, 213, 1712, 2208, 2588, 3400
Hpy166II GTNNAC 7 cut(s) 424, 2561, 2593, 2717, 2984, 3310, 3405
Hpy8I GTNNAC 7 cut(s) 424, 2561, 2593, 2717, 2984, 3310, 3405
Hpy99I CGWCG 1 cut(s) 1923
HpyCH4IV ACGT 4 cut(s) 511, 1918, 2327, 2542
HpySE526I ACGT 4 cut(s) 511, 1918, 2327, 2542
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 1 cut(s) 444
KflI GGGWCCC 1 cut(s) 2066
Kpn2I TCCGGA 1 cut(s) 1711
KpnI GGTACC 1 cut(s) 1902
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 3223, 3382
KspAI GTTAAC 1 cut(s) 2593
LmnI GCTCC 5 cut(s) 634, 1388, 2437, 2670, 3299
Lsp1109I GCAGC 8 cut(s) 493, 566, 1450, 1777, 2002, 2585, 2836, 3289
MaeII ACGT 4 cut(s) 511, 1918, 2327, 2542
MfeI CAATTG 1 cut(s) 1507
MflI RGATCY 5 cut(s) 232, 1868, 2189, 2360, 3206
MhlI GDGCHC 3 cut(s) 1612, 2434, 2485
MlsI TGGCCA 2 cut(s) 57, 3183
MluNI TGGCCA 2 cut(s) 57, 3183
MlyI GAGTC 4 cut(s) 335, 2000, 2722, 3169
MmeI TCCRAC 3 cut(s) 237, 1380, 2068
Mox20I TGGCCA 2 cut(s) 57, 3183
Mph1103I ATGCAT 3 cut(s) 187, 537, 1972
MroI TCCGGA 1 cut(s) 1711
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 3 cut(s) 970, 1113, 1949
MscI TGGCCA 2 cut(s) 57, 3183
MslI CAYNNNNRTG 4 cut(s) 197, 2121, 2805, 2965
Msp20I TGGCCA 2 cut(s) 57, 3183
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 6 cut(s) 173, 213, 1712, 2208, 2588, 3400
MspR9I CCNGG 7 cut(s) 54, 876, 1421, 1732, 3141, 3185, 3400
MunI CAATTG 1 cut(s) 1507
Mva1269I GAATGC 1 cut(s) 1732
MvaI CCWGG 6 cut(s) 54, 876, 1421, 1732, 3141, 3185
MvnI CGCG 1 cut(s) 2344
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 3400
NdeI CATATG 2 cut(s) 2028, 3410
NgoMIV GCCGGC 1 cut(s) 212
NheI GCTAGC 1 cut(s) 2078
NlaIV GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2483, 2484, 2672
NmeAIII GCCGAG 1 cut(s) 2709
NmuCI GTSAC 7 cut(s) 323, 407, 1782, 2002, 2705, 2795, 2956
NsiI ATGCAT 3 cut(s) 187, 537, 1972
NspI RCATGY 6 cut(s) 1790, 2120, 2358, 2580, 3064, 3081
OliI CACNNNNGTG 1 cut(s) 197
PaeI GCATGC 2 cut(s) 2120, 3064
PaeR7I CTCGAG 1 cut(s) 1638
PagI TCATGA 2 cut(s) 784, 1408
PciI ACATGT 1 cut(s) 2354
PctI GAATGC 1 cut(s) 1732
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 3 cut(s) 970, 1113, 1949
PfeI GAWTC 9 cut(s) 863, 1271, 1292, 1634, 1643, 1694, 1821, 1945, 3229
PflMI CCANNNNNTGG 3 cut(s) 229, 256, 3190
PleI GAGTC 4 cut(s) 335, 1999, 2721, 3168
PpsI GAGTC 4 cut(s) 335, 1999, 2721, 3168
PpuMI RGGWCCY 1 cut(s) 2066
PscI ACATGT 1 cut(s) 2354
PshAI GACNNNNGTC 1 cut(s) 2712
Psp1406I AACGTT 1 cut(s) 2327
Psp5II RGGWCCY 1 cut(s) 2066
Psp6I CCWGG 6 cut(s) 52, 874, 1419, 1730, 3139, 3183
PspFI CCCAGC 2 cut(s) 63, 249
PspGI CCWGG 6 cut(s) 52, 874, 1419, 1730, 3139, 3183
PspN4I GGNNCC 8 cut(s) 1346, 1425, 1900, 2067, 2068, 2483, 2484, 2672
PspOMI GGGCCC 1 cut(s) 2481
PspPI GGNCC 8 cut(s) 35, 567, 1010, 2066, 2222, 2481, 2482, 2842
PspPPI RGGWCCY 1 cut(s) 2066
PstI CTGCAG 1 cut(s) 3307
PstNI CAGNNNCTG 2 cut(s) 298, 3352
PsuI RGATCY 5 cut(s) 232, 1868, 2189, 2360, 3206
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 3 cut(s) 1836, 1900, 2581
RsaNI GTAC 3 cut(s) 1835, 1899, 2580
RseI CAYNNNNRTG 4 cut(s) 197, 2121, 2805, 2965
Sau96I GGNCC 8 cut(s) 35, 567, 1010, 2066, 2222, 2481, 2482, 2842
SchI GAGTC 4 cut(s) 335, 2000, 2722, 3169
ScrFI CCNGG 7 cut(s) 54, 876, 1421, 1732, 3141, 3185, 3400
SduI GDGCHC 3 cut(s) 1612, 2434, 2485
SfcI CTRYAG 2 cut(s) 2934, 3303
Sfr274I CTCGAG 1 cut(s) 1638
SinI GGWCC 1 cut(s) 2066
SlaI CTCGAG 1 cut(s) 1638
SmiMI CAYNNNNRTG 4 cut(s) 197, 2121, 2805, 2965
SmlI CTYRAG 7 cut(s) 354, 867, 997, 1638, 1684, 2710, 2720
SmoI CTYRAG 7 cut(s) 354, 867, 997, 1638, 1684, 2710, 2720
SpeI ACTAGT 1 cut(s) 1352
SphI GCATGC 2 cut(s) 2120, 3064
SsiI CCGC 5 cut(s) 240, 565, 581, 618, 1739
SspI AATATT 1 cut(s) 2648
StyD4I CCNGG 7 cut(s) 52, 874, 1419, 1730, 3139, 3183, 3398
TaiI ACGT 4 cut(s) 514, 1921, 2330, 2545
TaqI TCGA 9 cut(s) 267, 313, 666, 1600, 1639, 1921, 2782, 2870, 3158
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 2579
TauI GCSGC 2 cut(s) 584, 1741
TfiI GAWTC 9 cut(s) 863, 1271, 1292, 1634, 1643, 1694, 1821, 1945, 3229
TseFI GTSAC 7 cut(s) 323, 407, 1782, 2002, 2705, 2795, 2956
TseI GCWGC 8 cut(s) 481, 554, 1463, 1790, 2015, 2573, 2824, 3302
Tsp45I GTSAC 7 cut(s) 323, 407, 1782, 2002, 2705, 2795, 2956
TspGWI ACGGA 6 cut(s) 674, 1217, 1240, 1357, 2021, 2693
Van91I CCANNNNNTGG 3 cut(s) 229, 256, 3190
VpaK11BI GGWCC 1 cut(s) 2066
XceI RCATGY 6 cut(s) 1790, 2120, 2358, 2580, 3064, 3081
XcmI CCANNNNNNNNNTGG 1 cut(s) 1396
XhoI CTCGAG 1 cut(s) 1638
XmiI GTMKAC 1 cut(s) 3404
XmnI GAANNNNTTC 3 cut(s) 970, 1113, 1949
Zsp2I ATGCAT 3 cut(s) 187, 537, 1972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.