Prupe.1G219400_v2.0.a1

GRF zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014246
Physical Location & Seq
Forward (+)
23403002 .. 23403408
407 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G219400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 213 bp
ATGCAGAGGAGGAAAAAAGGATGCAGGTTTTTTGTTTGGGTGGATGTTGAATTTCCACCTCGAGAGAAGGCTCCGGTGAGTTGGCTACTTAGAAGATTGAAGGAACTTGAAAAGGACGTTGGGCGTTGTCAATCAAGAGAAAGAAAGTTAATGTGTTGGCTTATTCTTTCATGGGGTTTAGTAATGTTGTTGTTGTTTTGGCAATGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-GRF

Protein Analysis

71

Amino Acids

8.64

Weight (kDa)

10.06

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 50
AgsI TTSAA 3 cut(s) 50, 100, 110
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
Ama87I CYCGRG 1 cut(s) 60
ApoI RAATTY 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 209
BseGI GGATG 2 cut(s) 26, 49
BseMI GCAATG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 26, 49
BtsCI GGATG 2 cut(s) 26, 49
BveI ACCTGC 1 cut(s) 15
CviAII CATG 1 cut(s) 171
CviJI RGCY 3 cut(s) 71, 85, 160
CviKI_1 RGCY 3 cut(s) 71, 85, 160
DdeI CTNAG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 60
FaeI CATG 1 cut(s) 174
FaiI YATR 1 cut(s) 172
FatI CATG 1 cut(s) 170
FokI GGATG 2 cut(s) 33, 56
HapII CCGG 1 cut(s) 74
Hin1II CATG 1 cut(s) 174
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 62, 135
HpyAV CCTTC 2 cut(s) 61, 94
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 4, 24
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 174
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 10, 87
LweI GCATC 1 cut(s) 11
MaeII ACGT 1 cut(s) 117
MboII GAAGA 1 cut(s) 105
MluCI AATT 1 cut(s) 50
MnlI CCTC 2 cut(s) 3, 69
MseI TTAA 1 cut(s) 149
MspI CCGG 1 cut(s) 74
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 149
SetI ASST 3 cut(s) 29, 61, 120
SfaNI GCATC 1 cut(s) 11
Sfr274I CTCGAG 1 cut(s) 60
SgeI CNNG 7 cut(s) 37, 72, 74, 86, 119, 147, 183
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 1 cut(s) 50
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 61
TasI AATT 1 cut(s) 50
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.