Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004206

Physical Location & Seq

Genomic Coordinates Reverse (-)

23943483 .. 23948350

Gene Structure 4868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G226400.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCAAACAAAGAAGAAAAGTTCTGGAAGAACTGCTGCTAGAGAGCATGCTAGTCCCAAGGTTACAAGAGCTCAGAAGAAAGCCTATGAAAATGTGCAACTTGTGGAAAAGAAGGTTGCAGATCTAATTACATCTTCAGCAAGAAAGCAGAGAGTTGGCGGCACTCATAAAAAGAATGGGGAGCCTGTTACTGCAACCATTTCAACTATGAATTATGACTCAATGTGTGATGAGACTGCTGAGACTTGTTTGGAGCATGATGCTTTAAGTGATGGTTGCATAGAGAATAAGGGTTGTAAAGAGGAAACTGCTGATTGCATGCTGGGAACTATATTTTCTCCTTCCTTTCACATATCTAAGCACACCAATGGGGAACCTGCTAATGAAGTTGATTTTGTTAAATTCTTTAGAAATGAAGACCACAATTTCCATCAAGAATGTGAAATAAAGTACTCGAGAGTTGATGTGCTGAATGGTCATGTTGTTCAAGAGACTTCCGAATCCTTGGTTAGAGATGAGAAGAGTTACTATGAGAACACATTATCTTCAGTAAATATAACATATCCTGTTGTGGAAGCAGCCGGTATTTCTTCTGAAGTCTCAGCCATATATCTTGCTATGAAAAATTCTAAGTTGGAATGCGTAGATGAGCATGGTCAAGAGCCCATGTCAACTGATTTATACACAGATGATGATGAGTTTGACGAGATTGATGACTTTGATCCTTACTTATTCATCAAGAACTTACCTGATTTGTCATCTGTTGTCCCAACTTTTCGGCCGATGCTTCTGCCTAAACAGACACGGAGTTGCCCTCCTACTAGTCTTGTTTTGGACTTGGATGAAACTTTGGTACACTCCACACTAGAACCTTGTGATGATGCAGACTTCACTTTTCCTGTAAATTTTAATCTCCAGCAGCACACAGTATACGTCCGATGCCGTCCTCATCTCAGAGATTTTCTGGACAGAGTTTCCACTCTTTTTGAGATCATAATATTTACAGCTAGTCAAAGTATTTATGCAGAGCAGCTTCTAAATGTGCTGGACCCAAAAAGGAAGATATTTCGCCATCGTGTTTTTCGTGATTCCTGTGTTTTTGTGGAGGGGAATTACCTCAAAGATTTGTCAGTTCTTGGTCGTGATTTGTCACGTGTTATCATAGTCGACAACTCTCCACAGGCATTTGGATTCCAAGTAGACAATGGAATACCAATTGAGAGCTGGTTTGATGATCGTTCTGATAAAGAATTACTTTTATTACTTCCTTTTTTGGAGAGCTTGGTTGGAGTAGAAGATGTTCGGCCACTAATTGCAAACAAATTCAACCTTAGGGAGAGAGTAGCTGCTGCTGTTTATCCTCTGAACTCATGTAGAGGTGATCCTTTTGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

466

Amino Acids

52.73

Weight (kDa)

5.03

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11860 AT5G11860 AT5G11860 AT5G11860 AT5G11860
fragaria_vesca	FvH4_4g23810 FvH4_4g23810 FvH4_4g23810
malus_domestica	MD13G1118600.v1.1 MD16G1118800.v1.1
prunus_persica	Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1
pyrus_communis	pycom13g10330 pycom16g10170
rosa_chinensis	RchiOBHm_Chr4g0430361
rosa_laevigata	RLG00000006982 RLG00000006984
rosa_multiflora	Rmu_sc0000131.1_g000049 Rmu_sc0001089.1_g000032
rosa_roxburghii	Rroxscaffold_5G00372160
rosa_samantha	Rh4AG299000 Rh4BG305600 Rh4CG321500 Rh4DG302900
rosa_wichuraiana	Rw4G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccI	GTMKAC	3 cut(s)	930, 1167, 1200
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	716, 1376
AcoI	YGGCCR	2 cut(s)	779, 1304
AcsI	RAATTY	4 cut(s)	401, 625, 904, 1322
AcuI	CTGAAG	3 cut(s)	120, 531, 615
AcvI	CACGTG	1 cut(s)	1154
AfaI	GTAC	2 cut(s)	452, 855
AflIII	ACRYGT	1 cut(s)	1153
AgsI	TTSAA	4 cut(s)	204, 488, 1327, 1391
AhlI	ACTAGT	1 cut(s)	821
AluBI	AGCT	6 cut(s)	71, 1007, 1033, 1224, 1281, 1346
AluI	AGCT	6 cut(s)	71, 1007, 1033, 1224, 1281, 1346
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	4 cut(s)	227, 236, 485, 604
AlwI	GGATC	2 cut(s)	716, 1376
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	2 cut(s)	779, 1304
ApeKI	GCWGC	6 cut(s)	35, 578, 919, 1030, 1346, 1349
ApoI	RAATTY	4 cut(s)	401, 625, 904, 1322
Asp700I	GAANNNNTTC	1 cut(s)	1299
AspS9I	GGNCC	1 cut(s)	1048
AsuHPI	GGTGA	1 cut(s)	1391
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	1048
AxyI	CCTNAGG	1 cut(s)	1331
BanII	GRGCYC	2 cut(s)	73, 666
BbrPI	CACGTG	1 cut(s)	1154
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	6 cut(s)	22, 590, 931, 1042, 1333, 1336
BccI	CCATC	3 cut(s)	266, 438, 1080
BceAI	ACGGC	1 cut(s)	927
BcgI	CGANNNNNNTGC	2 cut(s)	772, 806
BcoDI	GTCTC	4 cut(s)	227, 236, 485, 604
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	5 cut(s)	39, 51, 822, 866, 1008
BfuAI	ACCTGC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	7 cut(s)	36, 160, 579, 920, 1031, 1347, 1350
BlsI	GCNGC	7 cut(s)	37, 161, 580, 921, 1032, 1348, 1351
BmcAI	AGTACT	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	1048
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	1048
BmiI	GGNNCC	3 cut(s)	183, 375, 1050
BmsI	GCATC	4 cut(s)	250, 774, 871, 929
BpiI	GAAGAC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	799, 831
BpmI	CTGGAG	1 cut(s)	899
BsaAI	YACGTR	1 cut(s)	1154
BsaJI	CCNNGG	2 cut(s)	57, 504
Bse118I	RCCGGY	1 cut(s)	581
Bse21I	CCTNAGG	1 cut(s)	1331
BseDI	CCNNGG	2 cut(s)	57, 504
BseGI	GGATG	1 cut(s)	847
BseMII	CTCAG	4 cut(s)	86, 231, 615, 967
BseX3I	CGGCCG	1 cut(s)	779
BseXI	GCAGC	6 cut(s)	22, 590, 931, 1042, 1333, 1336
BseYI	CCCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	782
BshFI	GGCC	2 cut(s)	781, 1306
BsiEI	CGRYCG	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	39, 752
BsmAI	GTCTC	4 cut(s)	227, 236, 485, 604
BsmFI	GGGAC	2 cut(s)	39, 752
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	2 cut(s)	781, 1306
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	2 cut(s)	73, 666
Bsp143I	GATC	5 cut(s)	121, 721, 990, 1234, 1381
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	781, 1306
BspCNI	CTCAG	4 cut(s)	85, 232, 614, 966
BspLI	GGNNCC	3 cut(s)	183, 375, 1050
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	716, 1376
BsrFI	RCCGGY	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	57, 504
BssMI	GATC	5 cut(s)	121, 721, 990, 1234, 1381
BssNAI	GTATAC	1 cut(s)	931
BssT1I	CCWWGG	2 cut(s)	57, 504
Bst1107I	GTATAC	1 cut(s)	931
Bst4CI	ACNGT	1 cut(s)	928
Bst6I	CTCTTC	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	1154
BstC8I	GCNNGC	2 cut(s)	48, 320
BstDEI	CTNAG	7 cut(s)	72, 240, 357, 601, 630, 953, 1331
BstF5I	GGATG	1 cut(s)	847
BstKTI	GATC	5 cut(s)	124, 724, 993, 1237, 1384
BstMAI	GTCTC	4 cut(s)	227, 236, 485, 604
BstMBI	GATC	5 cut(s)	121, 721, 990, 1234, 1381
BstMCI	CGRYCG	1 cut(s)	782
BstNSI	RCATGY	2 cut(s)	50, 322
BstV1I	GCAGC	6 cut(s)	22, 590, 931, 1042, 1333, 1336
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BstZ17I	GTATAC	1 cut(s)	931
BstZI	CGGCCG	1 cut(s)	779
Bsu36I	CCTNAGG	1 cut(s)	1331
BsuRI	GGCC	2 cut(s)	781, 1306
BtsCI	GGATG	1 cut(s)	847
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	48, 320
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	1048
Csp6I	GTAC	2 cut(s)	451, 854
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	7 cut(s)	47, 257, 319, 479, 653, 667, 1371
CviQI	GTAC	2 cut(s)	451, 854
DdeI	CTNAG	7 cut(s)	72, 240, 357, 601, 630, 953, 1331
DpnI	GATC	5 cut(s)	123, 723, 992, 1236, 1383
DpnII	GATC	5 cut(s)	121, 721, 990, 1234, 1381
EaeI	YGGCCR	2 cut(s)	779, 1304
EagI	CGGCCG	1 cut(s)	779
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	57, 504
Eco24I	GRGCYC	2 cut(s)	73, 666
Eco47I	GGWCC	1 cut(s)	1048
Eco52I	CGGCCG	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	3 cut(s)	120, 531, 615
Eco72I	CACGTG	1 cut(s)	1154
Eco81I	CCTNAGG	1 cut(s)	1331
Eco88I	CYCGRG	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	57, 504
EcoT38I	GRGCYC	2 cut(s)	73, 666
ErhI	CCWWGG	2 cut(s)	57, 504
FaeI	CATG	7 cut(s)	50, 260, 322, 482, 656, 670, 1374
FalI	AAGNNNNNCTT	2 cut(s)	1239, 1271
FaqI	GGGAC	2 cut(s)	39, 752
FatI	CATG	7 cut(s)	46, 256, 318, 478, 652, 666, 1370
FblI	GTMKAC	3 cut(s)	930, 1167, 1200
Fnu4HI	GCNGC	7 cut(s)	36, 160, 579, 920, 1031, 1347, 1350
FokI	GGATG	1 cut(s)	854
FriOI	GRGCYC	2 cut(s)	73, 666
Fsp4HI	GCNGC	7 cut(s)	36, 160, 579, 920, 1031, 1347, 1350
FspBI	CTAG	5 cut(s)	39, 51, 822, 866, 1008
GluI	GCNGC	7 cut(s)	36, 160, 579, 920, 1031, 1347, 1350
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	899
HaeIII	GGCC	2 cut(s)	781, 1306
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	7 cut(s)	50, 260, 322, 482, 656, 670, 1374
HincII	GTYRAC	2 cut(s)	672, 1168
HindII	GTYRAC	2 cut(s)	672, 1168
HinfI	GANTC	4 cut(s)	218, 500, 1088, 1191
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	1391
Hpy166II	GTNNAC	5 cut(s)	672, 856, 931, 1168, 1201
Hpy188I	TCNGA	7 cut(s)	75, 499, 595, 938, 956, 1243, 1365
Hpy188III	TCNNGA	9 cut(s)	24, 434, 456, 488, 659, 739, 965, 1085, 1142
Hpy8I	GTNNAC	5 cut(s)	672, 856, 931, 1168, 1201
HpyAV	CCTTC	2 cut(s)	106, 351
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	2 cut(s)	933, 1153
HpyCH4V	TGCA	9 cut(s)	4, 97, 119, 194, 279, 318, 884, 1025, 1316
HpyF3I	CTNAG	7 cut(s)	72, 240, 357, 601, 630, 953, 1331
HpySE526I	ACGT	2 cut(s)	933, 1153
Hsp92II	CATG	7 cut(s)	50, 260, 322, 482, 656, 670, 1374
Kzo9I	GATC	5 cut(s)	121, 721, 990, 1234, 1381
LmnI	GCTCC	2 cut(s)	181, 253
Lsp1109I	GCAGC	6 cut(s)	22, 590, 931, 1042, 1333, 1336
LweI	GCATC	4 cut(s)	250, 774, 871, 929
MaeI	CTAG	5 cut(s)	39, 51, 822, 866, 1008
MaeII	ACGT	2 cut(s)	933, 1153
MaeIII	GTNAC	4 cut(s)	61, 187, 524, 1149
MalI	GATC	5 cut(s)	123, 723, 992, 1236, 1383
MboI	GATC	5 cut(s)	121, 721, 990, 1234, 1381
MfeI	CAATTG	1 cut(s)	1215
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	73, 666
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	615, 1267
MnlI	CCTC	7 cut(s)	295, 825, 957, 1099, 1127, 1370, 1371
MroXI	GAANNNNTTC	1 cut(s)	1299
MseI	TTAA	3 cut(s)	266, 399, 909
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	1215
Mva1269I	GAATGC	1 cut(s)	644
NdeII	GATC	5 cut(s)	121, 721, 990, 1234, 1381
NlaIII	CATG	7 cut(s)	50, 260, 322, 482, 656, 670, 1374
NlaIV	GGNNCC	3 cut(s)	183, 375, 1050
NmuCI	GTSAC	1 cut(s)	1149
NspI	RCATGY	2 cut(s)	50, 322
PaeI	GCATGC	2 cut(s)	50, 322
PaeR7I	CTCGAG	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	1299
PfeI	GAWTC	3 cut(s)	500, 1088, 1191
PkrI	GCNGC	7 cut(s)	37, 161, 580, 921, 1032, 1348, 1351
PleI	GAGTC	1 cut(s)	212
PmaCI	CACGTG	1 cut(s)	1154
PmlI	CACGTG	1 cut(s)	1154
PpsI	GAGTC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	1154
Psp124BI	GAGCTC	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	1154
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	183, 375, 1050
PspPI	GGNCC	1 cut(s)	1048
PsrI	GAACNNNNNNTAC	2 cut(s)	1284, 1316
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	452, 855
RsaNI	GTAC	2 cut(s)	451, 854
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	1166
SaqAI	TTAA	3 cut(s)	266, 399, 909
SatI	GCNGC	7 cut(s)	36, 160, 579, 920, 1031, 1347, 1350
Sau3AI	GATC	5 cut(s)	121, 721, 990, 1234, 1381
Sau96I	GGNCC	1 cut(s)	1048
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	73, 666
SfaNI	GCATC	4 cut(s)	250, 774, 871, 929
Sfr274I	CTCGAG	1 cut(s)	454
SinI	GGWCC	1 cut(s)	1048
SlaI	CTCGAG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	821
SphI	GCATGC	2 cut(s)	50, 322
SsiI	CCGC	1 cut(s)	159
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	5 cut(s)	39, 51, 822, 866, 1008
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	57, 504
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	2 cut(s)	936, 1156
TaqI	TCGA	2 cut(s)	455, 1167
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	500, 1088, 1191
Tru1I	TTAA	3 cut(s)	266, 399, 909
Tru9I	TTAA	3 cut(s)	266, 399, 909
TseFI	GTSAC	1 cut(s)	1149
TseI	GCWGC	6 cut(s)	35, 578, 919, 1030, 1346, 1349
Tsp45I	GTSAC	1 cut(s)	1149
TspDTI	ATGAA	7 cut(s)	102, 224, 399, 429, 635, 724, 858
TspGWI	ACGGA	1 cut(s)	820
VpaK11BI	GGWCC	1 cut(s)	1048
XapI	RAATTY	4 cut(s)	401, 625, 904, 1322
XceI	RCATGY	2 cut(s)	50, 322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1202, 1221
XhoI	CTCGAG	1 cut(s)	454
XmiI	GTMKAC	3 cut(s)	930, 1167, 1200
XmnI	GAANNNNTTC	1 cut(s)	1299
XspI	CTAG	5 cut(s)	39, 51, 822, 866, 1008
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.