Rh4BG305600

HORMA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004206
Physical Location & Seq
Reverse (-)
47581141 .. 47586606
5466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG305600.1

Sequence Viewer

Length: 1356 bp
ATGCAAACAAGGAAAAAAAGTTCTGGAAGAACTGCTTCTAGAGAGCATACCAGTCCCAAGGTTACAAGAGCTCAGAAGAAAACACATGAAAATGTCAAAGTATTGGATACCAAAGTTACAGATATGATTACATCTTCCTCCAGGAAGCAGAGACTCGGTGGGACTCATAAGAAGAATGAGGAGCCTGTTACTGCAAGCACTTTAAGTACAAATTATGACTTGCTGCTTAACGAGACTGCCGAGGCTTGTTTGGGGCATGATGCTTTAAGTGATGATTGCAAAGAGAATAAGGGTTGTGAGGAGGGTACTACTGATTGCGAGCTGGGAACTATATTTTCTCCTGCCTTTCACATCCCGAAACATGCTGGTGGAGAATCTGCCAATGGAGTTGATTTTGTTAAATTCTTTCAAAATGGAGATCACAATTTCCATCAAGAGATGGAAATAAAGTACTCACCCGATGATGCACACCATGGTTATGTTGGCCAAGAGACATCCGAGTCCACTGTTCGAGACGAGAACAACTACTTTGTGGAGGCAACCAATATTTCTTCTGAAGTCTCAGCCATATATCTTGCCATGAAAAATTCCAAGTTGGAATGTTTAGATGATCATGGTCAGGAACCTATGTCAACTGATTTGTACGTGGATGATGATGAGAGTGAGGAATTTGATGACTTTGATCCTTACTTATTTATCAAGAACTTACCTGACTTGTCCTCAGTTGTCCCCACTTTTCGGCCGTTGCCTAAACAGACTCGAAGTTGTCCTCCTACAAGTCTTGTTTTGGACTTGGATGAAACTCTGGTACATTCCACGCTAGAACCTTGTGATGATGCAGACTTCACATTTCCCATAAATTTTAACCTACAAGAGCATACAGTATATGTTCGATGCCGTCCTCATCTCAGAGATTTTCTAGACCGAGTTTCGCTTCTTTTCGAGATCATTATCTTCACAGCTAGTCAAAGTATCTATGCAGAGCAGCTTCTAAATGTGCTGGATCCGAAGAGGAAGATTTTTCGCCATCGTGTTTTTCGTGATTCCTGTGTTTTTGTGGGGGGGAATTATCTCAAAGATTTGTCCGTTCTTGGCCGTGATTTGGCACATGTTGTCATTGTCGACAACTCTCCACAGGCATTTGGGTTCCAAGTGGACAATGGAATACCAATTGAGAGCTGGTTTGATGATCGTTCTGATACAGAATTACTTTCATTACTTCCTTTTTTGGAAAGCTTGGTTGGAGTAGAAGATGTTCGACCGCTAATTGCAAACAAATTCAACCTCAGGGAGAAAGTAGCTAGTGCTGATTATCCGCTAAACTCAAATAGAGGTGATTCTTTAGTGCCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HORMA NIF REF

Protein Analysis

451

Amino Acids

50.8

Weight (kDa)

4.92

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 261 - 420 4.8e-59 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 1122
AciI CCGC 2 cut(s) 1262, 1316
AclWI GGATC 3 cut(s) 677, 998, 1011
AcoI YGGCCR 3 cut(s) 484, 740, 1093
AcsI RAATTY 5 cut(s) 401, 586, 668, 859, 1277
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 5 cut(s) 208, 307, 452, 644, 810
AfiI CCNNNNNNNGG 2 cut(s) 738, 1102
AflIII ACRYGT 1 cut(s) 1108
AgsI TTSAA 2 cut(s) 410, 1282
AjnI CCWGG 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 1224, 1256
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 7 cut(s) 71, 322, 962, 988, 1179, 1236, 1301
AluI AGCT 7 cut(s) 71, 322, 962, 988, 1179, 1236, 1301
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 5 cut(s) 145, 227, 485, 507, 565
AlwI GGATC 3 cut(s) 677, 998, 1011
AoxI GGCC 3 cut(s) 484, 740, 1093
ApeKI GCWGC 2 cut(s) 223, 985
ApoI RAATTY 5 cut(s) 401, 586, 668, 859, 1277
Asp700I GAANNNNTTC 2 cut(s) 34, 1254
AsuHPI GGTGA 2 cut(s) 447, 1346
AxyI CCTNAGG 1 cut(s) 1286
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BalI TGGCCA 1 cut(s) 486
BamHI GGATCC 1 cut(s) 1003
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 210, 997
BccI CCATC 3 cut(s) 433, 438, 1035
BceAI ACGGC 3 cut(s) 727, 882, 1080
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 5 cut(s) 145, 227, 485, 507, 565
BfaI CTAG 5 cut(s) 39, 821, 920, 963, 1302
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 2 cut(s) 224, 986
BlsI GCNGC 2 cut(s) 225, 987
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 4 cut(s) 183, 624, 1005, 1148
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 4 cut(s) 250, 454, 826, 884
BpmI CTGGAG 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 950
BsaJI CCNNGG 3 cut(s) 57, 240, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 1102
Bse1I ACTGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 1286
Bse8I GATNNNNATC 1 cut(s) 950
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 57, 240, 472
BseGI GGATG 4 cut(s) 351, 494, 655, 802
BseJI GATNNNNATC 1 cut(s) 950
BseLI CCNNNNNNNGG 2 cut(s) 738, 1102
BseMII CTCAG 5 cut(s) 86, 576, 735, 922, 1300
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 194, 314
BseX3I CGGCCG 1 cut(s) 740
BseXI GCAGC 2 cut(s) 210, 997
BseYI CCCAGC 1 cut(s) 322
Bsh1285I CGRYCG 2 cut(s) 743, 1262
BshFI GGCC 3 cut(s) 486, 742, 1095
BsiEI CGRYCG 2 cut(s) 743, 1262
BsiHKAI GWGCWC 1 cut(s) 73
BslFI GGGAC 3 cut(s) 39, 175, 713
BslI CCNNNNNNNGG 2 cut(s) 738, 1102
BsmAI GTCTC 5 cut(s) 145, 227, 485, 507, 565
BsmBI CGTCTC 1 cut(s) 507
BsmFI GGGAC 3 cut(s) 39, 175, 713
BsnI GGCC 3 cut(s) 486, 742, 1095
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 2 cut(s) 1262, 1316
BspANI GGCC 3 cut(s) 486, 742, 1095
BspCNI CTCAG 5 cut(s) 85, 575, 734, 921, 1299
BspLI GGNNCC 4 cut(s) 183, 624, 1005, 1148
BspPI GGATC 3 cut(s) 677, 998, 1011
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 57, 240, 472
BssMI GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
BssT1I CCWWGG 2 cut(s) 57, 472
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 508, 883
Bst6I CTCTTC 1 cut(s) 1004
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 196, 320
BstDEI CTNAG 5 cut(s) 72, 562, 721, 908, 1286
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 4 cut(s) 351, 494, 655, 802
BstKTI GATC 6 cut(s) 421, 613, 685, 948, 1006, 1192
BstMAI GTCTC 5 cut(s) 145, 227, 485, 507, 565
BstMBI GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
BstMCI CGRYCG 2 cut(s) 743, 1262
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 2 cut(s) 365, 1112
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 210, 997
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BstZI CGGCCG 1 cut(s) 740
Bsu36I CCTNAGG 1 cut(s) 1286
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 3 cut(s) 486, 742, 1095
BtgI CCRYGG 1 cut(s) 472
BtsCI GGATG 4 cut(s) 351, 494, 655, 802
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 196, 320
Csp6I GTAC 5 cut(s) 207, 306, 451, 643, 809
CviAII CATG 7 cut(s) 86, 257, 362, 473, 580, 614, 1109
CviQI GTAC 5 cut(s) 207, 306, 451, 643, 809
DdeI CTNAG 5 cut(s) 72, 562, 721, 908, 1286
DpnI GATC 6 cut(s) 420, 612, 684, 947, 1005, 1191
DpnII GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
DrdI GACNNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 3 cut(s) 484, 740, 1093
EagI CGGCCG 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 1004
EarI CTCTTC 1 cut(s) 1004
Ecl136II GAGCTC 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 740
Eco130I CCWWGG 2 cut(s) 57, 472
Eco24I GRGCYC 1 cut(s) 73
Eco52I CGGCCG 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 576
Eco81I CCTNAGG 1 cut(s) 1286
EcoICRI GAGCTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 57, 472
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 57, 472
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 7 cut(s) 89, 260, 365, 476, 583, 617, 1112
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 3 cut(s) 39, 175, 713
FatI CATG 7 cut(s) 85, 256, 361, 472, 579, 613, 1108
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 1122
Fnu4HI GCNGC 2 cut(s) 224, 986
FokI GGATG 4 cut(s) 338, 481, 662, 809
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 224, 986
FspBI CTAG 5 cut(s) 39, 821, 920, 963, 1302
GluI GCNGC 2 cut(s) 224, 986
GsaI CCCAGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 3 cut(s) 486, 742, 1095
Hin1II CATG 7 cut(s) 89, 260, 365, 476, 583, 617, 1112
HincII GTYRAC 2 cut(s) 633, 1123
HindII GTYRAC 2 cut(s) 633, 1123
HindIII AAGCTT 1 cut(s) 1234
HinfI GANTC 7 cut(s) 153, 163, 374, 500, 757, 1043, 1337
HphI GGTGA 2 cut(s) 447, 1346
Hpy166II GTNNAC 4 cut(s) 504, 633, 1123, 1156
Hpy188I TCNGA 6 cut(s) 75, 499, 556, 911, 1008, 1198
Hpy8I GTNNAC 4 cut(s) 504, 633, 1123, 1156
HpyCH4III ACNGT 2 cut(s) 508, 883
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 7 cut(s) 4, 194, 279, 467, 839, 980, 1271
HpyF3I CTNAG 5 cut(s) 72, 562, 721, 908, 1286
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 7 cut(s) 89, 260, 365, 476, 583, 617, 1112
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 210, 997
LweI GCATC 4 cut(s) 250, 454, 826, 884
MaeI CTAG 5 cut(s) 39, 821, 920, 963, 1302
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 61, 115, 187
MalI GATC 6 cut(s) 420, 612, 684, 947, 1005, 1191
MboI GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
MboII GAAGA 9 cut(s) 39, 88, 126, 184, 543, 946, 1021, 1027, 1262
MfeI CAATTG 1 cut(s) 1170
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 486
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 4 cut(s) 147, 157, 509, 751
MmeI TCCRAC 2 cut(s) 576, 1222
Mox20I TGGCCA 1 cut(s) 486
MroXI GAANNNNTTC 2 cut(s) 34, 1254
MscI TGGCCA 1 cut(s) 486
MseI TTAA 5 cut(s) 203, 228, 266, 399, 864
MslI CAYNNNNRTG 3 cut(s) 90, 366, 477
Msp20I TGGCCA 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 1170
MvaI CCWGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 472
NdeII GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
NlaIII CATG 7 cut(s) 89, 260, 365, 476, 583, 617, 1112
NlaIV GGNNCC 4 cut(s) 183, 624, 1005, 1148
NmeAIII GCCGAG 1 cut(s) 265
NspI RCATGY 2 cut(s) 365, 1112
PciI ACATGT 1 cut(s) 1108
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 1036
PdmI GAANNNNTTC 2 cut(s) 34, 1254
PfeI GAWTC 3 cut(s) 374, 1043, 1337
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 2 cut(s) 225, 987
PleI GAGTC 4 cut(s) 147, 157, 508, 751
PpsI GAGTC 4 cut(s) 147, 157, 508, 751
Ppu21I YACGTR 1 cut(s) 646
PscI ACATGT 1 cut(s) 1108
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 4 cut(s) 183, 624, 1005, 1148
PsrI GAACNNNNNNTAC 2 cut(s) 1239, 1271
PsuI RGATCY 1 cut(s) 1003
RsaI GTAC 5 cut(s) 208, 307, 452, 644, 810
RsaNI GTAC 5 cut(s) 207, 306, 451, 643, 809
RseI CAYNNNNRTG 3 cut(s) 90, 366, 477
SacI GAGCTC 1 cut(s) 73
SalI GTCGAC 1 cut(s) 1121
SaqAI TTAA 5 cut(s) 203, 228, 266, 399, 864
SatI GCNGC 2 cut(s) 224, 986
Sau3AI GATC 6 cut(s) 418, 610, 682, 945, 1003, 1189
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 4 cut(s) 147, 157, 509, 751
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 73
SfaNI GCATC 4 cut(s) 250, 454, 826, 884
SmiMI CAYNNNNRTG 3 cut(s) 90, 366, 477
SsiI CCGC 2 cut(s) 1262, 1316
SspI AATATT 1 cut(s) 547
SspMI CTAG 5 cut(s) 39, 821, 920, 963, 1302
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 2 cut(s) 57, 472
TaaI ACNGT 2 cut(s) 508, 883
TaiI ACGT 1 cut(s) 648
TaqI TCGA 6 cut(s) 511, 760, 892, 942, 1122, 1258
TaqII GACCGA 1 cut(s) 939
TatI WGTACW 2 cut(s) 206, 450
TfiI GAWTC 3 cut(s) 374, 1043, 1337
Tru1I TTAA 5 cut(s) 203, 228, 266, 399, 864
Tru9I TTAA 5 cut(s) 203, 228, 266, 399, 864
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 223, 985
TspDTI ATGAA 4 cut(s) 102, 596, 813, 1203
TspGWI ACGGA 1 cut(s) 1075
TspRI CASTG 1 cut(s) 511
XapI RAATTY 5 cut(s) 401, 586, 668, 859, 1277
XbaI TCTAGA 2 cut(s) 38, 919
XceI RCATGY 2 cut(s) 365, 1112
XcmI CCANNNNNNNNNTGG 3 cut(s) 479, 1157, 1176
XmiI GTMKAC 1 cut(s) 1122
XmnI GAANNNNTTC 2 cut(s) 34, 1254
XspI CTAG 5 cut(s) 39, 821, 920, 963, 1302
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.