Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004206

Physical Location & Seq

Genomic Coordinates Forward (+)

12372917 .. 12377490

Gene Structure 4574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTGACGCTCACCTGGTGCTCCGTTGGAGAGGAAGGAAAGAAGCTCCCCCACCCCTTTGACGATCAGCTTGACCATCTCGGTGGTAAACGCGGTGGCGGCAGCTGTATAAACGGTAGTCCAAAAAAAAATGCGAAGGAGGAAAAGTGTCGTTGGACAACTGTAGACCCAATTAGATTCCAAGATGAGACTTTGGCTTTTAGTGTTTATTATTTTGAGACTGCTGAGGCTTGTTTGGGGCATGATGCTTTAAGTGATGATTGCAAAGAGAATAAGGGATGTGAGGAGGGCGCTACTGATTGCGTGCTGGGAACTATATTTTCTCCTACCTTTCACAAACCGAAACATGCTGGTGGAGAATCTGCCAGTGGACTTGATTTTGTTAAATTCTGTCAAAATGGAGATCACAATTTCCATAAAAAGATGGAAATAAAGTACTCACCTGTTGATGCACAGTTGCACACCATGACATCTGAGTCCACTGTTCGAGAAGAGAACAACTACTTTGTGGAGGCAACCAATATTTCTTCTGAAGTCTCAGCCATATATCTTGCCATGAAAAATTCCAAGTTGGAATGTTTAGATGAGCATGGTCAGGAACCTATGTCAACTGATTTGTACGTGGATGATGATGAGAGCGAGGAATTTGATGACTTTGATCCTTACTTATTTATCAAGAACTTACCTGACTTGTCCTCAGTTGCTCCCACTTTTCGGCCGTTGCTCCTGCCTAAGCAGACTCGAAGTTGCCCTCCTACTAGTCTTGTTTTGGACTTGGATGAAACTCTGGTACATTCCACACTAGAACCTTGTGATGATGCAGACTTCACATTTCCCGTAAATTTTAACCTACAAGAGCATACAGTACGTATGTGTTCGATGCCGTCCTCACCTCAGAGATTTTCTGGACAGAGTTTCGCTTCTTTTCGAGATCATTATCTTCACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA NIF REF

Protein Analysis

317

Amino Acids

35.43

Weight (kDa)

4.77

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11860 AT5G11860 AT5G11860 AT5G11860 AT5G11860
fragaria_vesca	FvH4_4g23810 FvH4_4g23810 FvH4_4g23810
malus_domestica	MD13G1118600.v1.1 MD16G1118800.v1.1
prunus_persica	Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1
pyrus_communis	pycom13g10330 pycom16g10170
rosa_chinensis	RchiOBHm_Chr4g0430361
rosa_laevigata	RLG00000006982 RLG00000006984
rosa_multiflora	Rmu_sc0000131.1_g000049 Rmu_sc0001089.1_g000032
rosa_roxburghii	Rroxscaffold_5G00372160
rosa_samantha	Rh4AG299000 Rh4BG305600 Rh4CG321500 Rh4DG302900
rosa_wichuraiana	Rw4G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	93
AciI	CCGC	2 cut(s)	93, 99
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	1 cut(s)	716
AcsI	RAATTY	4 cut(s)	386, 562, 644, 841
AcuI	CTGAAG	1 cut(s)	552
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	4 cut(s)	437, 620, 792, 867
AfiI	CCNNNNNNNGG	1 cut(s)	714
AhlI	ACTAGT	1 cut(s)	758
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	4 cut(s)	46, 70, 105, 948
AluI	AGCT	4 cut(s)	46, 70, 105, 948
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	182, 212, 541
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	1 cut(s)	716
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	4 cut(s)	386, 562, 644, 841
AspLEI	GCGC	1 cut(s)	293
AsuHPI	GGTGA	4 cut(s)	4, 16, 432, 882
Bbv12I	GWGCWC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	84, 418
BceAI	ACGGC	2 cut(s)	703, 868
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	3 cut(s)	182, 212, 541
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	3 cut(s)	759, 803, 949
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	2 cut(s)	100, 103
BlsI	GCNGC	2 cut(s)	101, 104
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	4 cut(s)	235, 439, 808, 870
Bpu10I	CCTNAGC	2 cut(s)	225, 732
BsaAI	YACGTR	2 cut(s)	622, 869
BsaBI	GATNNNNATC	1 cut(s)	936
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	714
Bse1I	ACTGG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	284, 631, 784
BseJI	GATNNNNATC	1 cut(s)	936
BseLI	CCNNNNNNNGG	1 cut(s)	714
BseMII	CTCAG	5 cut(s)	216, 465, 552, 711, 908
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	299
BseX3I	CGGCCG	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	719
BshFI	GGCC	1 cut(s)	718
BsiEI	CGRYCG	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	714
BsmAI	GTCTC	3 cut(s)	182, 212, 541
BsnI	GGCC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	64, 403, 658, 931
BspACI	CCGC	2 cut(s)	93, 99
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	5 cut(s)	217, 466, 551, 710, 907
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	366
BssMI	GATC	4 cut(s)	64, 403, 658, 931
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	5 cut(s)	116, 163, 456, 484, 865
Bst6I	CTCTTC	1 cut(s)	486
BstBAI	YACGTR	2 cut(s)	622, 869
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	6 cut(s)	225, 474, 538, 697, 732, 894
BstF5I	GGATG	3 cut(s)	284, 631, 784
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	67, 406, 661, 934
BstMAI	GTCTC	3 cut(s)	182, 212, 541
BstMBI	GATC	4 cut(s)	64, 403, 658, 931
BstMCI	CGRYCG	1 cut(s)	719
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	162
BstSNI	TACGTA	1 cut(s)	869
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	716
BsuRI	GGCC	1 cut(s)	718
BtsCI	GGATG	3 cut(s)	284, 631, 784
BtsIMutI	CAGTG	2 cut(s)	373, 480
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	293
CseI	GACGC	1 cut(s)	16
CsiI	ACCWGGT	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	436, 619, 791, 866
CviAII	CATG	5 cut(s)	242, 347, 466, 556, 590
CviJI	RGCY	8 cut(s)	46, 70, 105, 197, 230, 542, 718, 948
CviKI_1	RGCY	8 cut(s)	46, 70, 105, 197, 230, 542, 718, 948
CviQI	GTAC	4 cut(s)	436, 619, 791, 866
DdeI	CTNAG	6 cut(s)	225, 474, 538, 697, 732, 894
DpnI	GATC	4 cut(s)	66, 405, 660, 933
DpnII	GATC	4 cut(s)	64, 403, 658, 931
DraIII	CACNNNGTG	1 cut(s)	18
DrdI	GACNNNNNNGTC	1 cut(s)	475
DseDI	GACNNNNNNGTC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	716
EagI	CGGCCG	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EclXI	CGGCCG	1 cut(s)	716
Eco105I	TACGTA	1 cut(s)	869
Eco52I	CGGCCG	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	5 cut(s)	245, 350, 469, 559, 593
FatI	CATG	5 cut(s)	241, 346, 465, 555, 589
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	100, 103
FokI	GGATG	3 cut(s)	291, 638, 791
Fsp4HI	GCNGC	2 cut(s)	100, 103
FspBI	CTAG	3 cut(s)	759, 803, 949
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	100, 103
GsaI	CCCAGC	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	718
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	245, 350, 469, 559, 593
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	4 cut(s)	177, 359, 476, 739
HphI	GGTGA	4 cut(s)	4, 16, 432, 882
Hpy166II	GTNNAC	5 cut(s)	89, 166, 371, 480, 609
Hpy188I	TCNGA	3 cut(s)	475, 532, 897
Hpy188III	TCNNGA	5 cut(s)	488, 596, 676, 906, 929
Hpy8I	GTNNAC	5 cut(s)	89, 166, 371, 480, 609
HpyAV	CCTTC	2 cut(s)	29, 130
HpyCH4III	ACNGT	5 cut(s)	116, 163, 456, 484, 865
HpyCH4IV	ACGT	2 cut(s)	621, 868
HpyCH4V	TGCA	4 cut(s)	264, 452, 460, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	6 cut(s)	225, 474, 538, 697, 732, 894
HpySE526I	ACGT	2 cut(s)	621, 868
Hsp92II	CATG	5 cut(s)	245, 350, 469, 559, 593
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	64, 403, 658, 931
LmnI	GCTCC	4 cut(s)	26, 51, 709, 729
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	4 cut(s)	235, 439, 808, 870
MabI	ACCWGGT	1 cut(s)	14
MaeI	CTAG	3 cut(s)	759, 803, 949
MaeII	ACGT	2 cut(s)	621, 868
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	4 cut(s)	66, 405, 660, 933
MboI	GATC	4 cut(s)	64, 403, 658, 931
MboII	GAAGA	3 cut(s)	503, 519, 932
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	6 cut(s)	171, 386, 409, 562, 644, 841
MlyI	GAGTC	2 cut(s)	485, 733
MmeI	TCCRAC	3 cut(s)	7, 134, 552
MseI	TTAA	3 cut(s)	251, 384, 846
MslI	CAYNNNNRTG	2 cut(s)	81, 351
MspA1I	CMGCKG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	4 cut(s)	64, 403, 658, 931
NlaIII	CATG	5 cut(s)	245, 350, 469, 559, 593
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	177, 359
PkrI	GCNGC	2 cut(s)	101, 104
PleI	GAGTC	2 cut(s)	484, 733
PpsI	GAGTC	2 cut(s)	484, 733
Ppu21I	YACGTR	2 cut(s)	622, 869
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	4 cut(s)	437, 620, 792, 867
RsaNI	GTAC	4 cut(s)	436, 619, 791, 866
RseI	CAYNNNNRTG	2 cut(s)	81, 351
SaqAI	TTAA	3 cut(s)	251, 384, 846
SatI	GCNGC	2 cut(s)	100, 103
Sau3AI	GATC	4 cut(s)	64, 403, 658, 931
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	2 cut(s)	485, 733
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	23
SexAI	ACCWGGT	1 cut(s)	14
SfaNI	GCATC	4 cut(s)	235, 439, 808, 870
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	81, 351
SnaBI	TACGTA	1 cut(s)	869
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	6 cut(s)	171, 386, 409, 562, 644, 841
SsiI	CCGC	2 cut(s)	93, 99
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	3 cut(s)	759, 803, 949
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	5 cut(s)	116, 163, 456, 484, 865
TaiI	ACGT	2 cut(s)	624, 871
TaqI	TCGA	4 cut(s)	487, 742, 878, 928
TasI	AATT	6 cut(s)	171, 386, 409, 562, 644, 841
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	177, 359
Tru1I	TTAA	3 cut(s)	251, 384, 846
Tru9I	TTAA	3 cut(s)	251, 384, 846
TscAI	CASTG	2 cut(s)	373, 487
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	572, 795
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	373, 487
XapI	RAATTY	4 cut(s)	386, 562, 644, 841
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	3 cut(s)	759, 803, 949
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.