pycom16g10170

CTD small phosphatase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004206
Physical Location & Seq
Forward (+)
6919990 .. 6923266
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10170.1

Sequence Viewer

Length: 1218 bp
ATGCAAACGAAGAAAAGAAGTTCTGGAAGAACTGCTGTGCGAGAGCATGCTAGCCCCAAGGTCACAAGAGCTCAGAGGAAAGCGTATGAAAGTGTGCAAGTTGTGGAAAAGAAAGTTGCAGACCTAATTACATCTTCAGCAAGGAAGCAAAGAATAGGTGGCACTCATAAAAAGAACGGGGGTGCTGTTACTGCAACCAATTCGGATTTGAATTATGATTCGATGCGTGATGAGACTGCTGACACTTGTTTGGGGCATGATGCTATGAGTGATGATTGCATAGAGATTAAGGATTGTATAGAGGGAACTGCTGATTGCACAGCGGAAACAATATTTTCTCCTGCATTTCAAATATCTAAACATGCCGAAGTTGAATCTGATAATGGAGTTGTGGAGCCAGCCATCATCTCTTCTGAAGTCTCAGCCATATATCTTGCCATGAGAAATTCCAAGTTGGAATGTGTGGATGAGCATGGTCAGGAGCCCATGTCAACTGATTTATACACAGATGATGACGAGAATGAGGAAGTTGATGACTTTGATCGTTACTTCTTTATCAAGAACTTACCTGACTTGTCAGCAGTTGTTCCAACTTTTCGGCCGATGCTTTTACCTAAACAGACACGGCGTTGCCCTCCTACTAGTCTTGTTTTGGACTTGGATGAAACTTTGGTACACTCCACGCTAGAACCTTGCGATGATGCAGACTTCACTTTCCCTGTTAATTTTAACCTCCAAGAGCACACAGTATATGTCCGATGCCGTCCTCATCTCAGAGATTTTTTGGACAGAGTGTCCAGTCTTTTTGAGATCATAATATTTACAGCTAGTCAAAGTATTTATGCAGAGCAACTTCTAAATGTGCTGGACCCAAAAAGGAAGATATTTCGCCATCGTGTTTTTCGGGATTCGTGTGTTTTTGTGGAGGGGAATTACCTCAAAGATTTGTCAGTTCTTGGTCGTGATTTGGCACACACTATCATAATTGACAACTCTCCACAGGCATTCGGGTTCCAAGTAGACAATGGAATACCAATCGAGAGCTGGTTTGATGATCGTTCTGATAAAGAGTTACTCTCCTTACTTCCTTTTTTGGAGAGCCTGGTCGGAGTAGAAGATGTTCGGCCACTAATTGCAAGCAAATTCAACCTTAGGGAGAAAATTGCTGCTGCTGTTTATCCTTTTAGCTCAAACAGAGGCGATCCCTTCGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

406

Amino Acids

45.67

Weight (kDa)

4.97

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 216 - 375 8.6e-60 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1020
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 1196
AcoI YGGCCR 2 cut(s) 599, 1124
AcsI RAATTY 2 cut(s) 445, 1142
AcuI CTGAAG 2 cut(s) 120, 435
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 1 cut(s) 1212
AgsI TTSAA 4 cut(s) 211, 350, 374, 1147
AhdI GACNNNNNGTC 1 cut(s) 793
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 1101
AluBI AGCT 4 cut(s) 71, 827, 1044, 1188
AluI AGCT 4 cut(s) 71, 827, 1044, 1188
Alw21I GWGCWC 2 cut(s) 73, 744
Alw26I GTCTC 2 cut(s) 227, 424
AlwI GGATC 1 cut(s) 1196
AoxI GGCC 2 cut(s) 599, 1124
ApeKI GCWGC 2 cut(s) 1166, 1169
ApoI RAATTY 2 cut(s) 445, 1142
Asp700I GAANNNNTTC 1 cut(s) 1119
AspS9I GGNCC 1 cut(s) 868
AsuII TTCGAA 1 cut(s) 1209
AsuNHI GCTAGC 1 cut(s) 50
AvaII GGWCC 1 cut(s) 868
AxyI CCTNAGG 1 cut(s) 1151
BanII GRGCYC 2 cut(s) 73, 486
Bbv12I GWGCWC 2 cut(s) 73, 744
BbvI GCAGC 2 cut(s) 1153, 1156
BccI CCATC 2 cut(s) 410, 900
BceAI ACGGC 2 cut(s) 641, 747
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 1 cut(s) 1103
BcoDI GTCTC 2 cut(s) 227, 424
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 4 cut(s) 51, 642, 686, 828
BisI GCNGC 2 cut(s) 1167, 1170
BlsI GCNGC 2 cut(s) 1168, 1171
Bme1390I CCNGG 1 cut(s) 1103
Bme18I GGWCC 1 cut(s) 868
BmeRI GACNNNNNGTC 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 4 cut(s) 396, 483, 870, 1013
BmrFI CCNGG 1 cut(s) 1103
BmsI GCATC 5 cut(s) 213, 250, 594, 691, 749
BmtI GCTAGC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 1061, 1093
Bpu14I TTCGAA 1 cut(s) 1209
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 1212
Bse1I ACTGG 1 cut(s) 798
Bse21I CCTNAGG 1 cut(s) 1151
BseBI CCWGG 1 cut(s) 1103
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 472, 667
BseLI CCNNNNNNNGG 1 cut(s) 1212
BseMII CTCAG 3 cut(s) 86, 435, 787
BseNI ACTGG 1 cut(s) 798
BseX3I CGGCCG 1 cut(s) 599
BseXI GCAGC 2 cut(s) 1153, 1156
Bsh1285I CGRYCG 1 cut(s) 602
BshFI GGCC 2 cut(s) 601, 1126
BsiEI CGRYCG 1 cut(s) 602
BsiHKAI GWGCWC 2 cut(s) 73, 744
BslI CCNNNNNNNGG 1 cut(s) 1212
BsmAI GTCTC 2 cut(s) 227, 424
BsmI GAATGC 1 cut(s) 1004
BsnI GGCC 2 cut(s) 601, 1126
Bsp119I TTCGAA 1 cut(s) 1209
Bsp1286I GDGCHC 3 cut(s) 73, 486, 744
Bsp143I GATC 4 cut(s) 541, 810, 1054, 1201
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 601, 1126
BspCNI CTCAG 3 cut(s) 85, 434, 786
BspLI GGNNCC 4 cut(s) 396, 483, 870, 1013
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 1196
BspT104I TTCGAA 1 cut(s) 1209
BsrI ACTGG 1 cut(s) 798
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 4 cut(s) 541, 810, 1054, 1201
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 1103
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 1209
BstC8I GCNNGC 4 cut(s) 48, 52, 399, 1138
BstDEI CTNAG 4 cut(s) 72, 421, 773, 1151
BstENI CCTNNNNNAGG 1 cut(s) 1210
BstF5I GGATG 2 cut(s) 472, 667
BstKTI GATC 4 cut(s) 544, 813, 1057, 1204
BstMAI GTCTC 2 cut(s) 227, 424
BstMBI GATC 4 cut(s) 541, 810, 1054, 1201
BstMCI CGRYCG 1 cut(s) 602
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 1103
BstNSI RCATGY 2 cut(s) 50, 365
BstSCI CCNGG 1 cut(s) 1101
BstV1I GCAGC 2 cut(s) 1153, 1156
BstZI CGGCCG 1 cut(s) 599
Bsu36I CCTNAGG 1 cut(s) 1151
BsuRI GGCC 2 cut(s) 601, 1126
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 2 cut(s) 472, 667
Cac8I GCNNGC 4 cut(s) 48, 52, 399, 1138
Cfr13I GGNCC 1 cut(s) 868
Csp6I GTAC 1 cut(s) 674
CviAII CATG 6 cut(s) 47, 257, 362, 439, 473, 487
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 4 cut(s) 72, 421, 773, 1151
DpnI GATC 4 cut(s) 543, 812, 1056, 1203
DpnII GATC 4 cut(s) 541, 810, 1054, 1201
DriI GACNNNNNGTC 1 cut(s) 793
EaeI YGGCCR 2 cut(s) 599, 1124
EagI CGGCCG 1 cut(s) 599
Eam1104I CTCTTC 1 cut(s) 415
Eam1105I GACNNNNNGTC 1 cut(s) 793
EarI CTCTTC 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 73, 486
Eco47I GGWCC 1 cut(s) 868
Eco52I CGGCCG 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 120, 435
Eco81I CCTNAGG 1 cut(s) 1151
EcoICRI GAGCTC 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 1210
EcoRII CCWGG 1 cut(s) 1101
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 2 cut(s) 73, 486
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 6 cut(s) 50, 260, 365, 442, 476, 490
FatI CATG 6 cut(s) 46, 256, 361, 438, 472, 486
FblI GTMKAC 1 cut(s) 1020
Fnu4HI GCNGC 2 cut(s) 1167, 1170
FokI GGATG 2 cut(s) 479, 674
FriOI GRGCYC 2 cut(s) 73, 486
Fsp4HI GCNGC 2 cut(s) 1167, 1170
FspBI CTAG 4 cut(s) 51, 642, 686, 828
GluI GCNGC 2 cut(s) 1167, 1170
HaeIII GGCC 2 cut(s) 601, 1126
Hin1II CATG 6 cut(s) 50, 260, 365, 442, 476, 490
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 218, 374, 908
Hpy166II GTNNAC 3 cut(s) 492, 676, 1021
Hpy188I TCNGA 8 cut(s) 75, 205, 379, 415, 758, 776, 1063, 1109
Hpy188III TCNNGA 6 cut(s) 24, 479, 559, 905, 962, 1039
Hpy8I GTNNAC 3 cut(s) 492, 676, 1021
HpyAV CCTTC 1 cut(s) 1216
HpyCH4III ACNGT 1 cut(s) 748
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 4 cut(s) 72, 421, 773, 1151
Hsp92II CATG 6 cut(s) 50, 260, 365, 442, 476, 490
Kzo9I GATC 4 cut(s) 541, 810, 1054, 1201
LmnI GCTCC 2 cut(s) 394, 481
Lsp1109I GCAGC 2 cut(s) 1153, 1156
LweI GCATC 5 cut(s) 213, 250, 594, 691, 749
MaeI CTAG 4 cut(s) 51, 642, 686, 828
MaeIII GTNAC 4 cut(s) 61, 187, 545, 1071
MalI GATC 4 cut(s) 543, 812, 1056, 1203
MboI GATC 4 cut(s) 541, 810, 1054, 1201
MboII GAAGA 6 cut(s) 22, 39, 126, 402, 892, 1127
MhlI GDGCHC 3 cut(s) 73, 486, 744
MmeI TCCRAC 3 cut(s) 435, 614, 1087
MnlI CCTC 9 cut(s) 69, 295, 517, 645, 743, 777, 919, 947, 1190
MroXI GAANNNNTTC 1 cut(s) 1119
MseI TTAA 3 cut(s) 288, 723, 729
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 1103
Mva1269I GAATGC 1 cut(s) 1004
MvaI CCWGG 1 cut(s) 1103
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 4 cut(s) 541, 810, 1054, 1201
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 6 cut(s) 50, 260, 365, 442, 476, 490
NlaIV GGNNCC 4 cut(s) 396, 483, 870, 1013
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 2 cut(s) 50, 365
NspV TTCGAA 1 cut(s) 1209
PaeI GCATGC 1 cut(s) 50
PctI GAATGC 1 cut(s) 1004
PdmI GAANNNNTTC 1 cut(s) 1119
PfeI GAWTC 3 cut(s) 218, 374, 908
PkrI GCNGC 2 cut(s) 1168, 1171
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 1101
PspGI CCWGG 1 cut(s) 1101
PspN4I GGNNCC 4 cut(s) 396, 483, 870, 1013
PspPI GGNCC 1 cut(s) 868
PsrI GAACNNNNNNTAC 2 cut(s) 1104, 1136
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 288, 723, 729
SatI GCNGC 2 cut(s) 1167, 1170
Sau3AI GATC 4 cut(s) 541, 810, 1054, 1201
Sau96I GGNCC 1 cut(s) 868
ScrFI CCNGG 1 cut(s) 1103
SduI GDGCHC 3 cut(s) 73, 486, 744
SfaNI GCATC 5 cut(s) 213, 250, 594, 691, 749
SfuI TTCGAA 1 cut(s) 1209
SinI GGWCC 1 cut(s) 868
SpeI ACTAGT 1 cut(s) 641
SphI GCATGC 1 cut(s) 50
SsiI CCGC 1 cut(s) 323
SspI AATATT 2 cut(s) 333, 819
SspMI CTAG 4 cut(s) 51, 642, 686, 828
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 1101
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 748
TaqI TCGA 3 cut(s) 221, 1038, 1209
TfiI GAWTC 3 cut(s) 218, 374, 908
Tru1I TTAA 3 cut(s) 288, 723, 729
Tru9I TTAA 3 cut(s) 288, 723, 729
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 1166, 1169
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 102, 678
VpaK11BI GGWCC 1 cut(s) 868
XagI CCTNNNNNAGG 1 cut(s) 1210
XapI RAATTY 2 cut(s) 445, 1142
XceI RCATGY 2 cut(s) 50, 365
XcmI CCANNNNNNNNNTGG 2 cut(s) 1022, 1041
XmiI GTMKAC 1 cut(s) 1020
XmnI GAANNNNTTC 1 cut(s) 1119
XspI CTAG 4 cut(s) 51, 642, 686, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.