Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004206

Physical Location & Seq

Genomic Coordinates Forward (+)

6917000 .. 6920300

Gene Structure 3301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCAAACGAAGAAAAGAAGTTCTGGAAGAACTGCTGTGAGAGAGCACGCTTGTCCCAAGGTTACAAGAGCTCAGAAGAAAGCATATGAAAGTGTGCAAGTTGTGGAAAAGAAAGTTGCTGACCTAATTACATCTTCAGCAAGGAAGCAGAGAATAGATGGCACTCATAAAAAGAATGGGGGGCCTGTTACTGCAACCAATTCAAATTTGAATTATGACTCAATGCGTGATGGGACTGCTGACACTTGTTTGGGGCATGATGCTATGCGTGATGATTGCATAGATATTAAGGATTGTAAAGAGGGAACTACTGATTGCGAAGCAGAAACTATATTTTCTCCTGCCTTTCACATATCTAAACATGCCGAAGGGGAATCTGATAATGGAGTTGATTTTGTTAAATTCTTTGGAAATGGAGACCACAGTTATCATCAAGATTGTGAAATAATGTACTCAAGGGTTGATGTGCTGAATGGTCATGTTGTTCAAGAGACTTCCGAATCCATGGTTAGAGATGAGAGGAGTTACTGTGAGAACACATTTTCTTCAGTAAATATAACATGTCCTGTTGTGGATCCAGCCACTATTTCTTCTGAAGTCTCAGCCATATATCTTGCCATGAAAAATTCCAAGTTGGAATGTGTGGATGAACATGGTCACGAGCCCATGTCAACTGATTTATACACAGATGATGACGAGTATGAGGAAGTTGATGACTTTGATCCTTACTTCTTTATCAAGAACTTACCTGACTTATCAGCAGTTGTTCCAACTTTTCGGCCGATGCTTTTACCTAAACAGACACGGCGTTGTCCTCCTACTAGTCTTGTTTTGGACTTGGATGAAACCTTGGTACACTCCACACTAGAACCTTGTGCTGATGCAGACTTCACTTTTGCCGTAAATTTTAACCTCCAAAAGCATACAGTATATGTCCGATGCCGTCCTCATCTCAGAGATTTTCTGGACAAAGTTTCCAATCTTTTTGAGATCATAATATTTACAGCTAGTCAAAGTATTTATGCAGAGCAACTTCTAAATGTGCTGGACCCAAAAAGGAAGATATTTCGCCATCGTGTTTTTCGGGATTCCTGTGTTTTTGTGGAGGGGAATTACCTCAAAGATTTGTCAGTTCTTGGTCGTGATTTGGCACACACTATCATAATCGACAACTCTCCACAGGCATTCGGGTTCCAAGTAGACAATGGAATTCCAATTGAGAGCTGGTTCGATGATCGTTCTGATAAAGAATTACTCTTCTTACTTCCTTTTTTGGAGAGCTTGGTTGGAGTAGAAGATGTTCGGCCACTAATTGCAAGCAAATTCAGCCTTAGGGAGAAAATAGCTGCAGCTGTTTATCCTCTTCACTCAAACAGAGGCGATCCTTTCGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

466

Amino Acids

52.59

Weight (kDa)

5.17

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11860 AT5G11860 AT5G11860 AT5G11860 AT5G11860
fragaria_vesca	FvH4_4g23810 FvH4_4g23810 FvH4_4g23810
malus_domestica	MD13G1118600.v1.1 MD16G1118800.v1.1
prunus_persica	Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1
pyrus_communis	pycom13g10330 pycom16g10170
rosa_chinensis	RchiOBHm_Chr4g0430361
rosa_laevigata	RLG00000006982 RLG00000006984
rosa_multiflora	Rmu_sc0000131.1_g000049 Rmu_sc0001089.1_g000032
rosa_roxburghii	Rroxscaffold_5G00372160
rosa_samantha	Rh4AG299000 Rh4BG305600 Rh4CG321500 Rh4DG302900
rosa_wichuraiana	Rw4G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1200
AclWI	GGATC	4 cut(s)	569, 582, 716, 1376
AcoI	YGGCCR	2 cut(s)	779, 1304
AcsI	RAATTY	6 cut(s)	205, 401, 625, 904, 1209, 1322
AcuI	CTGAAG	3 cut(s)	120, 531, 615
AfaI	GTAC	2 cut(s)	452, 855
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	3 cut(s)	204, 211, 488
AhlI	ACTAGT	1 cut(s)	821
AluBI	AGCT	6 cut(s)	71, 1007, 1224, 1281, 1346, 1352
AluI	AGCT	6 cut(s)	71, 1007, 1224, 1281, 1346, 1352
Alw21I	GWGCWC	2 cut(s)	48, 73
Alw26I	GTCTC	3 cut(s)	411, 485, 604
AlwI	GGATC	4 cut(s)	569, 582, 716, 1376
AoxI	GGCC	3 cut(s)	182, 779, 1304
ApeKI	GCWGC	2 cut(s)	1346, 1349
ApoI	RAATTY	6 cut(s)	205, 401, 625, 904, 1209, 1322
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
Asp700I	GAANNNNTTC	1 cut(s)	1299
AspS9I	GGNCC	2 cut(s)	182, 1048
AsuII	TTCGAA	1 cut(s)	1389
AvaII	GGWCC	1 cut(s)	1048
AxyI	CCTNAGG	1 cut(s)	1331
BamHI	GGATCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	73, 666
BauI	CACGAG	1 cut(s)	659
Bbv12I	GWGCWC	2 cut(s)	48, 73
BbvI	GCAGC	2 cut(s)	1333, 1361
BccI	CCATC	3 cut(s)	152, 224, 1080
BceAI	ACGGC	3 cut(s)	821, 884, 927
BcoDI	GTCTC	3 cut(s)	411, 485, 604
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	3 cut(s)	822, 866, 1008
BfmI	CTRYAG	1 cut(s)	1347
BisI	GCNGC	2 cut(s)	1347, 1350
BlsI	GCNGC	2 cut(s)	1348, 1351
Bme18I	GGWCC	1 cut(s)	1048
BmgT120I	GGNCC	2 cut(s)	182, 1048
BmiI	GGNNCC	4 cut(s)	183, 576, 1050, 1193
BmsI	GCATC	4 cut(s)	250, 774, 871, 929
Bpu14I	TTCGAA	1 cut(s)	1389
BpuEI	CTTGAG	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	57, 504, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bse21I	CCTNAGG	1 cut(s)	1331
BseDI	CCNNGG	3 cut(s)	57, 504, 849
BseGI	GGATG	2 cut(s)	652, 847
BseMII	CTCAG	3 cut(s)	86, 615, 967
BseRI	GAGGAG	1 cut(s)	535
BseX3I	CGGCCG	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	1333, 1361
Bsh1285I	CGRYCG	1 cut(s)	782
BshFI	GGCC	3 cut(s)	184, 781, 1306
BsiEI	CGRYCG	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	48, 73
BslFI	GGGAC	2 cut(s)	39, 247
BsmAI	GTCTC	3 cut(s)	411, 485, 604
BsmFI	GGGAC	2 cut(s)	39, 247
BsmI	GAATGC	1 cut(s)	1184
BsnI	GGCC	3 cut(s)	184, 781, 1306
Bso31I	GGTCTC	1 cut(s)	411
Bsp119I	TTCGAA	1 cut(s)	1389
Bsp1286I	GDGCHC	3 cut(s)	48, 73, 666
Bsp143I	GATC	5 cut(s)	574, 721, 990, 1234, 1381
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	3 cut(s)	184, 781, 1306
BspCNI	CTCAG	3 cut(s)	85, 614, 966
BspLI	GGNNCC	4 cut(s)	183, 576, 1050, 1193
BspMAI	CTGCAG	1 cut(s)	1351
BspPI	GGATC	4 cut(s)	569, 582, 716, 1376
BspT104I	TTCGAA	1 cut(s)	1389
BspTNI	GGTCTC	1 cut(s)	411
BssECI	CCNNGG	3 cut(s)	57, 504, 849
BssMI	GATC	5 cut(s)	574, 721, 990, 1234, 1381
BssSI	CACGAG	1 cut(s)	659
BssT1I	CCWWGG	3 cut(s)	57, 504, 849
Bst2BI	CACGAG	1 cut(s)	659
Bst4CI	ACNGT	3 cut(s)	425, 530, 928
Bst6I	CTCTTC	2 cut(s)	1262, 1368
BstBI	TTCGAA	1 cut(s)	1389
BstC8I	GCNNGC	2 cut(s)	48, 1318
BstDEI	CTNAG	4 cut(s)	72, 601, 953, 1331
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	652, 847
BstKTI	GATC	5 cut(s)	577, 724, 993, 1237, 1384
BstMAI	GTCTC	3 cut(s)	411, 485, 604
BstMBI	GATC	5 cut(s)	574, 721, 990, 1234, 1381
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	1 cut(s)	1326
BstNSI	RCATGY	2 cut(s)	365, 564
BstSFI	CTRYAG	1 cut(s)	1347
BstV1I	GCAGC	2 cut(s)	1333, 1361
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BstZI	CGGCCG	1 cut(s)	779
Bsu36I	CCTNAGG	1 cut(s)	1331
BsuRI	GGCC	3 cut(s)	184, 781, 1306
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	652, 847
Cac8I	GCNNGC	2 cut(s)	48, 1318
Cfr13I	GGNCC	2 cut(s)	182, 1048
Csp6I	GTAC	2 cut(s)	451, 854
CviAII	CATG	8 cut(s)	257, 362, 479, 505, 561, 619, 653, 667
CviQI	GTAC	2 cut(s)	451, 854
DdeI	CTNAG	4 cut(s)	72, 601, 953, 1331
DpnI	GATC	5 cut(s)	576, 723, 992, 1236, 1383
DpnII	GATC	5 cut(s)	574, 721, 990, 1234, 1381
EaeI	YGGCCR	2 cut(s)	779, 1304
EagI	CGGCCG	1 cut(s)	779
Eam1104I	CTCTTC	2 cut(s)	1262, 1368
EarI	CTCTTC	2 cut(s)	1262, 1368
Ecl136II	GAGCTC	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	779
Eco130I	CCWWGG	3 cut(s)	57, 504, 849
Eco24I	GRGCYC	2 cut(s)	73, 666
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	1048
Eco52I	CGGCCG	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	3 cut(s)	120, 531, 615
Eco81I	CCTNAGG	1 cut(s)	1331
EcoICRI	GAGCTC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	1209
EcoT14I	CCWWGG	3 cut(s)	57, 504, 849
EcoT38I	GRGCYC	2 cut(s)	73, 666
ErhI	CCWWGG	3 cut(s)	57, 504, 849
FaeI	CATG	8 cut(s)	260, 365, 482, 508, 564, 622, 656, 670
FaqI	GGGAC	2 cut(s)	39, 247
FatI	CATG	8 cut(s)	256, 361, 478, 504, 560, 618, 652, 666
FauNDI	CATATG	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	1200
Fnu4HI	GCNGC	2 cut(s)	1347, 1350
FokI	GGATG	2 cut(s)	659, 854
FriOI	GRGCYC	2 cut(s)	73, 666
Fsp4HI	GCNGC	2 cut(s)	1347, 1350
FspBI	CTAG	3 cut(s)	822, 866, 1008
GluI	GCNGC	2 cut(s)	1347, 1350
HaeIII	GGCC	3 cut(s)	184, 781, 1306
Hin1II	CATG	8 cut(s)	260, 365, 482, 508, 564, 622, 656, 670
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	4 cut(s)	218, 374, 500, 1088
Hpy166II	GTNNAC	3 cut(s)	672, 856, 1201
Hpy188I	TCNGA	7 cut(s)	75, 379, 499, 595, 938, 956, 1243
Hpy188III	TCNNGA	8 cut(s)	24, 434, 488, 659, 739, 965, 1085, 1142
Hpy8I	GTNNAC	3 cut(s)	672, 856, 1201
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	3 cut(s)	425, 530, 928
HpyCH4V	TGCA	8 cut(s)	4, 97, 194, 279, 884, 1025, 1316, 1349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1326
HpyF3I	CTNAG	4 cut(s)	72, 601, 953, 1331
Hsp92II	CATG	8 cut(s)	260, 365, 482, 508, 564, 622, 656, 670
Kzo9I	GATC	5 cut(s)	574, 721, 990, 1234, 1381
Lsp1109I	GCAGC	2 cut(s)	1333, 1361
LweI	GCATC	4 cut(s)	250, 774, 871, 929
MaeI	CTAG	3 cut(s)	822, 866, 1008
MaeIII	GTNAC	4 cut(s)	61, 187, 524, 656
MalI	GATC	5 cut(s)	576, 723, 992, 1236, 1383
MboI	GATC	5 cut(s)	574, 721, 990, 1234, 1381
MfeI	CAATTG	1 cut(s)	1215
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	3 cut(s)	48, 73, 666
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	3 cut(s)	615, 794, 1267
MroXI	GAANNNNTTC	1 cut(s)	1299
MseI	TTAA	3 cut(s)	288, 399, 909
MspA1I	CMGCKG	1 cut(s)	1352
MunI	CAATTG	1 cut(s)	1215
Mva1269I	GAATGC	1 cut(s)	1184
MwoI	GCNNNNNNNGC	1 cut(s)	1326
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	5 cut(s)	574, 721, 990, 1234, 1381
NlaIII	CATG	8 cut(s)	260, 365, 482, 508, 564, 622, 656, 670
NlaIV	GGNNCC	4 cut(s)	183, 576, 1050, 1193
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	2 cut(s)	365, 564
NspV	TTCGAA	1 cut(s)	1389
PciI	ACATGT	1 cut(s)	560
PctI	GAATGC	1 cut(s)	1184
PdmI	GAANNNNTTC	1 cut(s)	1299
PfeI	GAWTC	3 cut(s)	374, 500, 1088
PkrI	GCNGC	2 cut(s)	1348, 1351
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	183, 576, 1050, 1193
PspPI	GGNCC	2 cut(s)	182, 1048
PsrI	GAACNNNNNNTAC	2 cut(s)	1284, 1316
PstI	CTGCAG	1 cut(s)	1351
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	1352
RsaI	GTAC	2 cut(s)	452, 855
RsaNI	GTAC	2 cut(s)	451, 854
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	288, 399, 909
SatI	GCNGC	2 cut(s)	1347, 1350
Sau3AI	GATC	5 cut(s)	574, 721, 990, 1234, 1381
Sau96I	GGNCC	2 cut(s)	182, 1048
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	3 cut(s)	48, 73, 666
SfaNI	GCATC	4 cut(s)	250, 774, 871, 929
SfcI	CTRYAG	1 cut(s)	1347
SfuI	TTCGAA	1 cut(s)	1389
SinI	GGWCC	1 cut(s)	1048
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	821
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	3 cut(s)	822, 866, 1008
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	3 cut(s)	57, 504, 849
TaaI	ACNGT	3 cut(s)	425, 530, 928
TaqI	TCGA	3 cut(s)	1167, 1230, 1389
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	3 cut(s)	374, 500, 1088
Tru1I	TTAA	3 cut(s)	288, 399, 909
Tru9I	TTAA	3 cut(s)	288, 399, 909
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	2 cut(s)	1346, 1349
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	4 cut(s)	102, 635, 663, 858
VpaK11BI	GGWCC	1 cut(s)	1048
XapI	RAATTY	6 cut(s)	205, 401, 625, 904, 1209, 1322
XceI	RCATGY	2 cut(s)	365, 564
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1202, 1221
XmiI	GTMKAC	1 cut(s)	1200
XmnI	GAANNNNTTC	1 cut(s)	1299
XspI	CTAG	3 cut(s)	822, 866, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.