Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0004206

Physical Location & Seq

Genomic Coordinates Reverse (-)

134754 .. 137384

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001089.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgcagggttgtgaggagggtgctgctgattgcgttctgggaactatattttctcctgcctttcacataccgaaacatgctggtggagaatctgccaatggagttgattttgttaaattctttcaaaatggagatcacaatttccataaagagatggaaataaagtactcacccgatgatgcacaccatggttatgttggccaagagacatctgagtccactgttcgagacgagaacaactactgtgagaactcattatcttctgtaactataacatgtcctgttgtggaggcaaccaatatttcttctgaagtctcagccatatatcttgccatgaaaaattccaagttggaatgtttagatgagcatggtcaggaacctatgtcaactgatttgtacgtggatgatgatgagagcgaggaatttgatgactttgatccttacttatttatcaagaacttacctgacttgtcctcagttgtccccacttttcggccgttgctgctgcctaagcagactcgaagttgtcctcctacaagtcttgttttggacttggatgaaactctggtacattccacactagaaccttgtgatgatgcagacttcacatttcctgtaaattttaacctacaagagcatacagtatatgttcgatgccgtcctcacctcagagattttctggacagagtttcgcttcttttcgagatcattatcttcacagctagtcaaagtatctatgcagagcagcttctaaatgtgctggatccgaagaggaagatttttcgccatcgtgtttttcgtgattcctgtgtttttgtggaggggaattatctcaaagatttgtcggttcttggccgtgatttggcacgtgttgtcatagtcgacaactctccacaggcatttgggttccaagtggacaatggaataccgattgagagctggtttgatgatcgttctgatacagaattactttcgttacttccttttttggaaagcttggttggagtagaagatgttcgaccgctaattgcaaacaaattcagcctccgggagaaaatagctactgctgattatccactaaactcaaatagaggtgattctttagtgccaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA NIF REF

Protein Analysis

371

Amino Acids

41.82

Weight (kDa)

4.53

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11860 AT5G11860 AT5G11860 AT5G11860 AT5G11860
fragaria_vesca	FvH4_4g23810 FvH4_4g23810 FvH4_4g23810
malus_domestica	MD13G1118600.v1.1 MD16G1118800.v1.1
prunus_persica	Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1 Prupe.1G226400_v2.0.a1
pyrus_communis	pycom13g10330 pycom16g10170
rosa_chinensis	RchiOBHm_Chr4g0430361
rosa_laevigata	RLG00000006982 RLG00000006984
rosa_multiflora	Rmu_sc0000131.1_g000049 Rmu_sc0001089.1_g000032
rosa_roxburghii	Rroxscaffold_5G00372160
rosa_samantha	Rh4AG299000 Rh4BG305600 Rh4CG321500 Rh4DG302900
rosa_wichuraiana	Rw4G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	882
AciI	CCGC	1 cut(s)	1022
AclWI	GGATC	3 cut(s)	431, 758, 771
AcoI	YGGCCR	3 cut(s)	199, 494, 853
AcsI	RAATTY	5 cut(s)	116, 340, 422, 619, 1037
AcuI	CTGAAG	1 cut(s)	330
AcvI	CACGTG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	167, 398, 570
AfiI	CCNNNNNNNGG	2 cut(s)	492, 862
AflIII	ACRYGT	2 cut(s)	275, 868
AgsI	TTSAA	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
AluBI	AGCT	5 cut(s)	722, 748, 939, 996, 1061
AluI	AGCT	5 cut(s)	722, 748, 939, 996, 1061
Alw26I	GTCTC	3 cut(s)	200, 222, 319
AlwI	GGATC	3 cut(s)	431, 758, 771
AoxI	GGCC	3 cut(s)	199, 494, 853
ApeKI	GCWGC	4 cut(s)	23, 502, 505, 745
ApoI	RAATTY	5 cut(s)	116, 340, 422, 619, 1037
Asp700I	GAANNNNTTC	1 cut(s)	1014
AsuC2I	CCSGG	1 cut(s)	1049
AsuHPI	GGTGA	3 cut(s)	162, 656, 1106
BalI	TGGCCA	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	763
BbrPI	CACGTG	1 cut(s)	869
BbvI	GCAGC	4 cut(s)	10, 489, 492, 757
BccI	CCATC	2 cut(s)	148, 795
BceAI	ACGGC	3 cut(s)	481, 642, 840
BcnI	CCSGG	1 cut(s)	1049
BcoDI	GTCTC	3 cut(s)	200, 222, 319
BfaI	CTAG	2 cut(s)	581, 723
BisI	GCNGC	4 cut(s)	24, 503, 506, 746
BlsI	GCNGC	4 cut(s)	25, 504, 507, 747
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	1049
BmiI	GGNNCC	3 cut(s)	378, 765, 908
BmrFI	CCNGG	1 cut(s)	1049
BmsI	GCATC	3 cut(s)	169, 586, 644
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	1049
BsaAI	YACGTR	2 cut(s)	400, 869
BsaBI	GATNNNNATC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 862
Bse8I	GATNNNNATC	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	409, 562
BseJI	GATNNNNATC	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	492, 862
BseMII	CTCAG	4 cut(s)	204, 330, 489, 682
BseRI	GAGGAG	1 cut(s)	29
BseX3I	CGGCCG	1 cut(s)	494
BseXI	GCAGC	4 cut(s)	10, 489, 492, 757
Bsh1285I	CGRYCG	2 cut(s)	497, 1022
BshFI	GGCC	3 cut(s)	201, 496, 855
BsiEI	CGRYCG	2 cut(s)	497, 1022
BsiSI	CCGG	1 cut(s)	1048
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	492, 862
BsmAI	GTCTC	3 cut(s)	200, 222, 319
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	201, 496, 855
Bsp143I	GATC	5 cut(s)	133, 436, 705, 763, 949
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	1022
BspANI	GGCC	3 cut(s)	201, 496, 855
BspCNI	CTCAG	4 cut(s)	205, 329, 488, 681
BspLI	GGNNCC	3 cut(s)	378, 765, 908
BspPI	GGATC	3 cut(s)	431, 758, 771
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	5 cut(s)	133, 436, 705, 763, 949
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	223, 245, 643
Bst6I	CTCTTC	1 cut(s)	764
BstBAI	YACGTR	2 cut(s)	400, 869
BstDEI	CTNAG	5 cut(s)	213, 316, 475, 510, 668
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	409, 562
BstKTI	GATC	5 cut(s)	136, 439, 708, 766, 952
BstMAI	GTCTC	3 cut(s)	200, 222, 319
BstMBI	GATC	5 cut(s)	133, 436, 705, 763, 949
BstMCI	CGRYCG	2 cut(s)	497, 1022
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 511
BstNSI	RCATGY	2 cut(s)	80, 279
BstSCI	CCNGG	1 cut(s)	1047
BstV1I	GCAGC	4 cut(s)	10, 489, 492, 757
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BstZI	CGGCCG	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	201, 496, 855
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	409, 562
BtsIMutI	CAGTG	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	166, 397, 569
CviAII	CATG	5 cut(s)	77, 188, 276, 334, 368
CviQI	GTAC	3 cut(s)	166, 397, 569
DdeI	CTNAG	5 cut(s)	213, 316, 475, 510, 668
DpnI	GATC	5 cut(s)	135, 438, 707, 765, 951
DpnII	GATC	5 cut(s)	133, 436, 705, 763, 949
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	3 cut(s)	199, 494, 853
EagI	CGGCCG	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
EclXI	CGGCCG	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	187
Eco52I	CGGCCG	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	330
Eco72I	CACGTG	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	5 cut(s)	80, 191, 279, 337, 371
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	5 cut(s)	76, 187, 275, 333, 367
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	4 cut(s)	24, 503, 506, 746
FokI	GGATG	2 cut(s)	416, 569
Fsp4HI	GCNGC	4 cut(s)	24, 503, 506, 746
FspBI	CTAG	2 cut(s)	581, 723
GluI	GCNGC	4 cut(s)	24, 503, 506, 746
HaeIII	GGCC	3 cut(s)	201, 496, 855
HapII	CCGG	1 cut(s)	1048
Hin1II	CATG	5 cut(s)	80, 191, 279, 337, 371
HincII	GTYRAC	2 cut(s)	387, 883
HindII	GTYRAC	2 cut(s)	387, 883
HindIII	AAGCTT	1 cut(s)	994
HinfI	GANTC	5 cut(s)	89, 215, 517, 803, 1097
HpaII	CCGG	1 cut(s)	1048
HphI	GGTGA	3 cut(s)	162, 656, 1106
Hpy166II	GTNNAC	4 cut(s)	219, 387, 883, 916
Hpy188I	TCNGA	5 cut(s)	214, 310, 671, 768, 958
Hpy188III	TCNNGA	6 cut(s)	227, 374, 454, 680, 703, 800
Hpy8I	GTNNAC	4 cut(s)	219, 387, 883, 916
HpyCH4III	ACNGT	3 cut(s)	223, 245, 643
HpyCH4IV	ACGT	2 cut(s)	399, 868
HpyCH4V	TGCA	5 cut(s)	4, 182, 599, 740, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 511
HpyF3I	CTNAG	5 cut(s)	213, 316, 475, 510, 668
HpySE526I	ACGT	2 cut(s)	399, 868
Hsp92II	CATG	5 cut(s)	80, 191, 279, 337, 371
Kzo9I	GATC	5 cut(s)	133, 436, 705, 763, 949
Lsp1109I	GCAGC	4 cut(s)	10, 489, 492, 757
LweI	GCATC	3 cut(s)	169, 586, 644
MaeI	CTAG	2 cut(s)	581, 723
MaeII	ACGT	2 cut(s)	399, 868
MaeIII	GTNAC	2 cut(s)	265, 975
MalI	GATC	5 cut(s)	135, 438, 707, 765, 951
MboI	GATC	5 cut(s)	133, 436, 705, 763, 949
MboII	GAAGA	6 cut(s)	252, 297, 706, 781, 787, 1022
MflI	RGATCY	1 cut(s)	763
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	9 cut(s)	116, 139, 340, 422, 619, 826, 965, 1026, 1037
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	224, 511
MmeI	TCCRAC	2 cut(s)	330, 982
Mox20I	TGGCCA	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	1014
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	114, 624
MslI	CAYNNNNRTG	2 cut(s)	81, 192
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	1 cut(s)	1048
MspR9I	CCNGG	1 cut(s)	1049
MwoI	GCNNNNNNNGC	2 cut(s)	502, 511
NciI	CCSGG	1 cut(s)	1049
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	5 cut(s)	133, 436, 705, 763, 949
NlaIII	CATG	5 cut(s)	80, 191, 279, 337, 371
NlaIV	GGNNCC	3 cut(s)	378, 765, 908
NspI	RCATGY	2 cut(s)	80, 279
PciI	ACATGT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	1014
PfeI	GAWTC	3 cut(s)	89, 803, 1097
PfoI	TCCNGGA	1 cut(s)	1047
PkrI	GCNGC	4 cut(s)	25, 504, 507, 747
PleI	GAGTC	2 cut(s)	223, 511
PmaCI	CACGTG	1 cut(s)	869
PmlI	CACGTG	1 cut(s)	869
PpsI	GAGTC	2 cut(s)	223, 511
Ppu21I	YACGTR	2 cut(s)	400, 869
PscI	ACATGT	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	869
PspN4I	GGNNCC	3 cut(s)	378, 765, 908
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	3 cut(s)	167, 398, 570
RsaNI	GTAC	3 cut(s)	166, 397, 569
RseI	CAYNNNNRTG	2 cut(s)	81, 192
SalI	GTCGAC	1 cut(s)	881
SaqAI	TTAA	2 cut(s)	114, 624
SatI	GCNGC	4 cut(s)	24, 503, 506, 746
Sau3AI	GATC	5 cut(s)	133, 436, 705, 763, 949
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	224, 511
ScrFI	CCNGG	1 cut(s)	1049
SfaNI	GCATC	3 cut(s)	169, 586, 644
SmiMI	CAYNNNNRTG	2 cut(s)	81, 192
Sse9I	AATT	9 cut(s)	116, 139, 340, 422, 619, 826, 965, 1026, 1037
SsiI	CCGC	1 cut(s)	1022
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	581, 723
StyD4I	CCNGG	1 cut(s)	1047
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	223, 245, 643
TaiI	ACGT	2 cut(s)	402, 871
TaqI	TCGA	6 cut(s)	226, 520, 652, 702, 882, 1018
TasI	AATT	9 cut(s)	116, 139, 340, 422, 619, 826, 965, 1026, 1037
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	89, 803, 1097
Tru1I	TTAA	2 cut(s)	114, 624
Tru9I	TTAA	2 cut(s)	114, 624
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	4 cut(s)	23, 502, 505, 745
TspDTI	ATGAA	2 cut(s)	350, 573
TspRI	CASTG	1 cut(s)	226
XapI	RAATTY	5 cut(s)	116, 340, 422, 619, 1037
XceI	RCATGY	2 cut(s)	80, 279
XcmI	CCANNNNNNNNNTGG	2 cut(s)	194, 917
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	1 cut(s)	1014
XspI	CTAG	2 cut(s)	581, 723
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.