Prupe.1G259900_v2.0.a1

DNA polymerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
26907196 .. 26912555
5360 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G259900.3

Sequence Viewer

Length: 1506 bp
ATGGCGCCAAAGACAACCAGAAATCAAAGTCCACCGTCCGATCCTCAGGGAATGTTCGCTGGATTGGTCGTATTCTTAGTCGAAAAACGAGTTCAGAGCCGTCGTTTACAGATTTGGAAGCAAAAATTGGTCCAAATGGGGGCTACAATCGAAGACAGCCTAACCAAAAGGGTCACTCACATACTTGCTATGGACCCAGAAGCCCTCTTACAACAACTGGGTAGTGAGCGCTTGGCGCACTTTAAAGGAACAGTTGTAGTTTATCAGTGGCTAGAGGATAGTTTGAGCTCAGGAGAGAAGGTATCTGAGGATATGTACCATCTAAAATTGGAAGCAGACAAGTCTTCCAATGATTACATTTCTAGCGATGATGAACCGCCAAAACCCAAAAAGCTAAGATCATCTTCTCCTGATGACTTGGCTCACACTTCAATACCCAAAACCCCTGAATCTCCAAATAAGGATCAGATCACTGCATTGCAGTCGGCTGTGCCCTACAACCCACCTGACTTGAATAAGAACATAACCCAGATATTCGGGAAACTTATCAATATTTATAGAGCCTTGGGTGATGACCGAAGATCGTTTAGCTATTACAAGGCTGTACCAGTTATAGAGAAGTTGCCTTTCAAGATTCAAAGTGTGGACCAAGTTAAAGACCTACCCAACATTGGAAAGTCTATGCAAGATCATATTCAGGAGATCGTGACTACTGGGAAGTTATCCAAGTTGGAGCACTTTGAAACAGATGAAAAGGTACGAACACTCGCCTTATTTGAGGAAATTTGGGGTGTTGGTCCAGCTACTGCACTGAAATTATATGAGAAAGGACACCGCACGTTAGATGATTTGAAGAATGAAGATTCATTAACAAATTCGCAAAAGTTGGGGTTAAGATATTATGACGATATCAAACAGAGGATCCCACGCCATGAGGCTGAAGAGATGGAACATCTTCTACAGAAAGTTGGAGAGAATGTTTTGCCCGGGGTGGTCATTGTATGTGGTGGATCATATAGACGCGGGAAAGCTTCTTGTGGGGATCTAGACATTGTAATTACACATCCTGATGGAACGAGTCATAAAGGTTTTCTACCAAAATATGTAAAGCAGTTAAAGGATATGAAGTTCCTACGAGAGGATTTGATTTTCAGTACGCATAGTGAGGAGGGTACTGATTCTGGCGTTGACACATATTTCGGACTTTGCACATATCTAGGAAGAGAGTTGCGACATCGCATAGATCTTAAGGTTTACCCATTGGAGATATATGCATTTGGACTAATAGCTTGGACAGGGAATGATGTATTGAATAGGAGGTTGAGATTACTAGCTGAATCTAAAGGATTCCGGCTTGATGATACAGGGTTGTTTCCAGCTACTCATGGCTCTTCCGGCAGTAAACGGGGGGTGAGAGCTAGCGCAAGCTTGAAATTTGACACAGAAAAGGAGGTGTTTGATTTCCTTGGGTTTCCTTGGCTTGAACCACATGAGAGAAATCTGTGA

Protein Analysis

502

Amino Acids

56.7

Weight (kDa)

6.75

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 1023
AciI CCGC 3 cut(s) 377, 835, 1023
AclWI GGATC 6 cut(s) 35, 471, 916, 929, 1018, 1050
AcsI RAATTY 3 cut(s) 783, 874, 1433
AcuI CTGAAG 1 cut(s) 960
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 317, 606, 759, 1156, 1174
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 3 cut(s) 139, 671, 1138
AflII CTTAAG 1 cut(s) 1247
AgsI TTSAA 9 cut(s) 432, 514, 631, 638, 743, 853, 1312, 1432, 1484
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AloI GAACNNNNNNTCC 2 cut(s) 1112, 1144
Alw21I GWGCWC 2 cut(s) 290, 738
AlwI GGATC 6 cut(s) 35, 471, 916, 929, 1018, 1050
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 986
Aor51HI AGCGCT 1 cut(s) 230
ApoI RAATTY 3 cut(s) 783, 874, 1433
ArsI GACNNNNNNTTYG 2 cut(s) 1181, 1213
Asp700I GAANNNNTTC 1 cut(s) 954
AspLEI GCGC 4 cut(s) 7, 231, 238, 1424
AspS9I GGNCC 4 cut(s) 130, 193, 646, 797
AsuC2I CCSGG 2 cut(s) 987, 988
AsuHPI GGTGA 2 cut(s) 581, 1423
AsuNHI GCTAGC 1 cut(s) 1418
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 4 cut(s) 130, 193, 646, 797
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 495
BamHI GGATCC 1 cut(s) 921
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbsI GAAGAC 2 cut(s) 159, 336
Bbv12I GWGCWC 2 cut(s) 290, 738
BccI CCATC 3 cut(s) 327, 940, 1064
BceAI ACGGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BcnI CCSGG 2 cut(s) 987, 988
BfaI CTAG 6 cut(s) 272, 363, 1046, 1217, 1331, 1419
BfmI CTRYAG 1 cut(s) 959
BfoI RGCGCY 2 cut(s) 8, 232
BfrI CTTAAG 1 cut(s) 1247
BglII AGATCT 1 cut(s) 1243
Bme1390I CCNGG 2 cut(s) 987, 988
Bme18I GGWCC 4 cut(s) 130, 193, 646, 797
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 4 cut(s) 130, 193, 646, 797
BmiI GGNNCC 3 cut(s) 6, 195, 923
BmrFI CCNGG 2 cut(s) 987, 988
BmrI ACTGGG 2 cut(s) 227, 723
BmtI GCTAGC 1 cut(s) 1422
BmuI ACTGGG 2 cut(s) 227, 723
BpiI GAAGAC 2 cut(s) 159, 336
Bpu10I CCTNAGC 1 cut(s) 289
BpuMI CCSGG 2 cut(s) 987, 988
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 564, 986, 987, 1465, 1475
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 963, 993
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 671, 1138
Bse1I ACTGG 3 cut(s) 222, 608, 718
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 476
BseDI CCNNGG 5 cut(s) 564, 986, 987, 1465, 1475
BseGI GGATG 1 cut(s) 1063
BseLI CCNNNNNNNGG 3 cut(s) 139, 671, 1138
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 3 cut(s) 59, 297, 303
BseNI ACTGG 3 cut(s) 222, 608, 718
BseRI GAGGAG 1 cut(s) 1181
BseSI GKGCMC 1 cut(s) 495
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 1023
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 290, 738
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 3 cut(s) 987, 1351, 1395
BslI CCNNNNNNNGG 3 cut(s) 139, 671, 1138
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 3 cut(s) 290, 495, 738
BspACI CCGC 3 cut(s) 377, 835, 1023
BspCNI CTCAG 3 cut(s) 58, 298, 302
BspFNI CGCG 1 cut(s) 1023
BspLI GGNNCC 3 cut(s) 6, 195, 923
BspOI GCTAGC 1 cut(s) 1422
BspPI GGATC 6 cut(s) 35, 471, 916, 929, 1018, 1050
BspQI GCTCTTC 1 cut(s) 1396
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 1247
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 3 cut(s) 222, 608, 718
BssECI CCNNGG 5 cut(s) 564, 986, 987, 1465, 1475
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 564, 1465, 1475
Bst4CI ACNGT 2 cut(s) 36, 253
Bst6I CTCTTC 3 cut(s) 936, 1216, 1396
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1247
BstC8I GCNNGC 2 cut(s) 1420, 1426
BstDEI CTNAG 5 cut(s) 45, 76, 289, 306, 395
BstENI CCTNNNNNAGG 1 cut(s) 1136
BstF5I GGATG 1 cut(s) 1063
BstFNI CGCG 1 cut(s) 1023
BstH2I RGCGCY 2 cut(s) 8, 232
BstHHI GCGC 4 cut(s) 7, 231, 238, 1424
BstMWI GCNNNNNNNGC 2 cut(s) 235, 1395
BstSCI CCNGG 2 cut(s) 985, 986
BstSFI CTRYAG 1 cut(s) 959
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 1 cut(s) 1023
BstV2I GAAGAC 2 cut(s) 159, 336
BstX2I RGATCY 3 cut(s) 921, 1042, 1243
BstYI RGATCY 3 cut(s) 921, 1042, 1243
Bsu36I CCTNAGG 1 cut(s) 45
BtgZI GCGATG 2 cut(s) 381, 1220
BtsCI GGATG 1 cut(s) 1063
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 272, 471, 809
Cac8I GCNNGC 2 cut(s) 1420, 1426
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 4 cut(s) 7, 231, 238, 1424
Cfr13I GGNCC 4 cut(s) 130, 193, 646, 797
Cfr9I CCCGGG 1 cut(s) 986
CseI GACGC 1 cut(s) 1029
Csp6I GTAC 5 cut(s) 316, 605, 758, 1155, 1173
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 3 cut(s) 932, 1385, 1490
CviQI GTAC 5 cut(s) 316, 605, 758, 1155, 1173
DdeI CTNAG 5 cut(s) 45, 76, 289, 306, 395
DinI GGCGCC 1 cut(s) 6
DraI TTTAAA 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 936, 1216, 1396
EarI CTCTTC 3 cut(s) 936, 1216, 1396
Ecl136II GAGCTC 1 cut(s) 288
Eco130I CCWWGG 3 cut(s) 564, 1465, 1475
Eco24I GRGCYC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 4 cut(s) 130, 193, 646, 797
Eco47III AGCGCT 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 960
Eco81I CCTNAGG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 986
EcoICRI GAGCTC 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 1136
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 564, 1465, 1475
EcoT22I ATGCAT 1 cut(s) 1276
EcoT38I GRGCYC 1 cut(s) 290
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 564, 1465, 1475
FaeI CATG 3 cut(s) 935, 1388, 1493
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FatI CATG 3 cut(s) 931, 1384, 1489
FauI CCCGC 1 cut(s) 1016
FokI GGATG 1 cut(s) 1050
FriOI GRGCYC 1 cut(s) 290
FspBI CTAG 6 cut(s) 272, 363, 1046, 1217, 1331, 1419
GlaI GCGC 4 cut(s) 6, 230, 237, 1423
HaeII RGCGCY 2 cut(s) 8, 232
HapII CCGG 3 cut(s) 987, 1351, 1395
HgaI GACGC 1 cut(s) 1029
HhaI GCGC 4 cut(s) 7, 231, 238, 1424
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 935, 1388, 1493
Hin6I GCGC 4 cut(s) 5, 229, 236, 1422
HinP1I GCGC 4 cut(s) 5, 229, 236, 1422
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HindIII AAGCTT 2 cut(s) 1029, 1426
HinfI GANTC 7 cut(s) 449, 634, 863, 1078, 1178, 1337, 1347
HpaII CCGG 3 cut(s) 987, 1351, 1395
HphI GGTGA 2 cut(s) 581, 1423
Hpy166II GTNNAC 6 cut(s) 32, 107, 646, 1189, 1255, 1403
Hpy188I TCNGA 5 cut(s) 40, 96, 307, 468, 1202
Hpy188III TCNNGA 8 cut(s) 291, 410, 538, 631, 698, 706, 1046, 1067
Hpy8I GTNNAC 6 cut(s) 32, 107, 646, 1189, 1255, 1403
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 36, 253
HpyCH4IV ACGT 1 cut(s) 839
HpyCH4V TGCA 6 cut(s) 476, 481, 685, 809, 1209, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 1395
HpyF3I CTNAG 5 cut(s) 45, 76, 289, 306, 395
HpySE526I ACGT 1 cut(s) 839
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 935, 1388, 1493
HspAI GCGC 4 cut(s) 5, 229, 236, 1422
KasI GGCGCC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 1396
LmnI GCTCC 1 cut(s) 733
MaeI CTAG 6 cut(s) 272, 363, 1046, 1217, 1331, 1419
MaeII ACGT 1 cut(s) 839
MaeIII GTNAC 2 cut(s) 172, 706
MflI RGATCY 3 cut(s) 921, 1042, 1243
MhlI GDGCHC 3 cut(s) 290, 495, 738
MluCI AATT 7 cut(s) 125, 326, 783, 815, 874, 1056, 1433
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1087
MmeI TCCRAC 2 cut(s) 711, 949
Mph1103I ATGCAT 1 cut(s) 1276
MroXI GAANNNNTTC 1 cut(s) 954
MseI TTAA 6 cut(s) 243, 654, 869, 893, 1115, 1248
MslI CAYNNNNRTG 1 cut(s) 1068
MspCI CTTAAG 1 cut(s) 1247
MspI CCGG 3 cut(s) 987, 1351, 1395
MspR9I CCNGG 2 cut(s) 987, 988
MvnI CGCG 1 cut(s) 1023
MwoI GCNNNNNNNGC 2 cut(s) 235, 1395
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 987, 988
NheI GCTAGC 1 cut(s) 1418
NlaIII CATG 3 cut(s) 935, 1388, 1493
NlaIV GGNNCC 3 cut(s) 6, 195, 923
NmuCI GTSAC 2 cut(s) 172, 706
NsiI ATGCAT 1 cut(s) 1276
PciSI GCTCTTC 1 cut(s) 1396
PdmI GAANNNNTTC 1 cut(s) 954
PfeI GAWTC 6 cut(s) 449, 634, 863, 1178, 1337, 1347
PleI GAGTC 1 cut(s) 1086
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 1086
Psp124BI GAGCTC 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 6, 195, 923
PspPI GGNCC 4 cut(s) 130, 193, 646, 797
PsrI GAACNNNNNNTAC 2 cut(s) 942, 974
PstNI CAGNNNCTG 1 cut(s) 806
PsuI RGATCY 3 cut(s) 921, 1042, 1243
RsaI GTAC 5 cut(s) 317, 606, 759, 1156, 1174
RsaNI GTAC 5 cut(s) 316, 605, 758, 1155, 1173
RseI CAYNNNNRTG 1 cut(s) 1068
SacI GAGCTC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 1396
SaqAI TTAA 6 cut(s) 243, 654, 869, 893, 1115, 1248
Sau96I GGNCC 4 cut(s) 130, 193, 646, 797
SchI GAGTC 1 cut(s) 1087
ScrFI CCNGG 2 cut(s) 987, 988
SduI GDGCHC 3 cut(s) 290, 495, 738
SfcI CTRYAG 1 cut(s) 959
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 4 cut(s) 130, 193, 646, 797
SmaI CCCGGG 1 cut(s) 988
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
Sse9I AATT 7 cut(s) 125, 326, 783, 815, 874, 1056, 1433
SsiI CCGC 3 cut(s) 377, 835, 1023
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 553
SspMI CTAG 6 cut(s) 272, 363, 1046, 1217, 1331, 1419
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 985, 986
StyI CCWWGG 3 cut(s) 564, 1465, 1475
TaaI ACNGT 2 cut(s) 36, 253
TaiI ACGT 1 cut(s) 842
TaqI TCGA 2 cut(s) 81, 150
TaqII GACCGA 1 cut(s) 591
TasI AATT 7 cut(s) 125, 326, 783, 815, 874, 1056, 1433
TfiI GAWTC 6 cut(s) 449, 634, 863, 1178, 1337, 1347
Tru1I TTAA 6 cut(s) 243, 654, 869, 893, 1115, 1248
Tru9I TTAA 6 cut(s) 243, 654, 869, 893, 1115, 1248
TscAI CASTG 3 cut(s) 272, 478, 816
TseFI GTSAC 2 cut(s) 172, 706
Tsp45I GTSAC 2 cut(s) 172, 706
TspDTI ATGAA 5 cut(s) 387, 765, 855, 873, 1139
TspMI CCCGGG 1 cut(s) 986
TspRI CASTG 3 cut(s) 272, 478, 816
Vha464I CTTAAG 1 cut(s) 1247
VpaK11BI GGWCC 4 cut(s) 130, 193, 646, 797
XagI CCTNNNNNAGG 1 cut(s) 1136
XapI RAATTY 3 cut(s) 783, 874, 1433
XbaI TCTAGA 1 cut(s) 1045
XmaI CCCGGG 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 6 cut(s) 272, 363, 1046, 1217, 1331, 1419
Zsp2I ATGCAT 1 cut(s) 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.