Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004762

Physical Location & Seq

Genomic Coordinates Forward (+)

52595688 .. 52598000

Gene Structure 2313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTAGAGCCGAGAAAGAGCAACTGAACCGAACTCTGAACCAGCACCTCAACACCGTCCATGAAATCTTAGAGGTGTTGGATCAAAAACCACCTTCTACACTTGAGAAGGTGAGCTGGGAAGAGGTCGTCCAGCTGGGTAACCAAGTCTCCAAACAAGCCACCATTGTTGGAATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGCTTGAAGAAAACATGACTGCCTACTTTAATATGCTACAAGGTTTTCTTCTTCTTTCACATGGGAGTATGGTTGGTGCAGGGCCTACTCTTTCTTCTTGTGTCCACGCATCTGTAAAGCAAGTTGTTGACTCCAGTTTTAAGTTGATGAAGGAATCTATCTCGTTGTATGGAGCAGTGAATAAAGACTGGAAACTGTCGATTCCACAGTTGGCTGGTGCAGTATGGGAAGCCTGTTCTGCTCTTAAGAAGACCCCTGCCACAAATGTCACAGCAATTGGGCGAGCAATGACGCAGGTTGCAGTTTCCATGAAAGATGTACTTCGTGAGATGAAGGAGCTTAAGCCAGCTACTGACCCAACAGAAGATGAGACTGAAGCAGAAATTGAGCCCCATGATGATGAAACTTCGAGTGATAGTGATCTGGGAAATGACTTGTCACCTGAAGAGATGAAAGTTGCTGAGCTAGCAATTGCAGCCGTGTCTGAGACTCTTGTAGTGATAAAGGAACTAATTCGTACCATCACAGGTTTGCTTAAACGGGAAAGTCCAAATGACAGTAATCTTGTGGATTCTCTGGAGAAACTGTTGAAGATGTGTCAAGGAATTGGAGAACAGATAGATGAGCTTGGAGCTTGTCTCTACCCCCCGCAAGAGGTTCCCACTATCAAGGCAGTATTGGAGAAAATGTCGAGCCTTACTGATGACATGAAAGCTGAATTACAGAGTCTTCAAGAAAATTTGGAAGCTTTTTGTCAGGCATGCGATTGTTTGAAGGGTTCATTGAGACAGCTTGAATCTGCACTAGACTGTCCAACAATTATTGGTTTAGAAAGCAGAGTGCAGAAGATTGATTTGAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

357

Amino Acids

39.18

Weight (kDa)

4.69

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCIP_N	PF13324	42 - 185	2.1e-47	Grap2 and cyclin-D-interacting, N-terminal
GCIP_C	PF20936	202 - 306	4.4e-26	Grap2 and cyclin-D-interacting, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10520 AT1G10520
fragaria_vesca	FvH4_4g35010 FvH4_4g35030
malus_domestica	MD16G1086600.v1.1 MD16G1086700.v1.1
prunus_persica	Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1
pyrus_communis	pycom16g07470
rosa_chinensis	RchiOBHm_Chr4g0444541 RchiOBHm_Chr4g0444551
rosa_laevigata	RLG00000005822 RLG00000005825
rosa_multiflora	Rmu_sc0003839.1_g000005 Rmu_sc0012648.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385000 Rroxscaffold_5G00385010
rosa_rugosa	Rorug04G0353500 Rorug04G0353600 Rorug04G0353700 Rorug04G0353800
rosa_samantha	Rh4AG413800 Rh4BG425500 Rh4CG439900 Rh4CG440200 Rh4DG420800 Rh4DG421100
rosa_wichuraiana	Rw4G035540 Rw4G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	2 cut(s)	603, 672
AfaI	GTAC	2 cut(s)	528, 727
AfiI	CCNNNNNNNGG	1 cut(s)	862
AflII	CTTAAG	2 cut(s)	452, 548
AgsI	TTSAA	6 cut(s)	215, 799, 941, 982, 1004, 1066
Alw26I	GTCTC	5 cut(s)	154, 572, 689, 851, 988
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	946
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	124, 639
AsuNHI	GCTAGC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	2 cut(s)	464, 929
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	671
BcoDI	GTCTC	5 cut(s)	154, 572, 689, 851, 988
BfaI	CTAG	3 cut(s)	204, 674, 1013
BfrI	CTTAAG	2 cut(s)	452, 548
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	1 cut(s)	684
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	867
BmsI	GCATC	1 cut(s)	326
BmtI	GCTAGC	1 cut(s)	677
BpiI	GAAGAC	2 cut(s)	464, 929
BplI	GAGNNNNNCTC	2 cut(s)	831, 863
BpmI	CTGGAG	2 cut(s)	325, 806
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	627
BsaXI	ACNNNNNCTCC	8 cut(s)	134, 164, 180, 210, 779, 809, 881, 911
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	342, 401
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	627
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	660, 684
BseNI	ACTGG	2 cut(s)	342, 401
BseXI	GCAGC	1 cut(s)	695
BseYI	CCCAGC	2 cut(s)	117, 136
BsgI	GTGCAG	4 cut(s)	306, 447, 993, 1070
BshFI	GGCC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmAI	GTCTC	5 cut(s)	154, 572, 689, 851, 988
BsnI	GGCC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	82, 628
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	661, 685
BspLI	GGNNCC	1 cut(s)	867
BspMI	ACCTGC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	90
BspTI	CTTAAG	2 cut(s)	452, 548
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	342, 401
BssMI	GATC	2 cut(s)	82, 628
Bst4CI	ACNGT	6 cut(s)	58, 405, 417, 767, 795, 1019
Bst6I	CTCTTC	2 cut(s)	117, 648
BstAFI	CTTAAG	2 cut(s)	452, 548
BstC8I	GCNNGC	4 cut(s)	492, 555, 675, 970
BstDEI	CTNAG	3 cut(s)	70, 669, 693
BstEII	GGTNACC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	85, 631
BstMAI	GTCTC	5 cut(s)	154, 572, 689, 851, 988
BstMBI	GATC	2 cut(s)	82, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
BstNSI	RCATGY	1 cut(s)	972
BstPI	GGTNACC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	695
BstV2I	GAAGAC	2 cut(s)	464, 929
BsuRI	GGCC	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	492, 555, 675, 970
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	2 cut(s)	527, 726
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	7 cut(s)	62, 223, 269, 517, 602, 916, 969
CviQI	GTAC	2 cut(s)	527, 726
DdeI	CTNAG	3 cut(s)	70, 669, 693
DpnI	GATC	2 cut(s)	84, 630
DpnII	GATC	2 cut(s)	82, 628
Eam1104I	CTCTTC	2 cut(s)	117, 648
EarI	CTCTTC	2 cut(s)	117, 648
Eco24I	GRGCYC	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	603, 672
Eco91I	GGTNACC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 513, 545
FatI	CATG	7 cut(s)	61, 222, 268, 516, 601, 915, 968
FauI	CCCGC	1 cut(s)	864
Fnu4HI	GCNGC	1 cut(s)	684
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	3 cut(s)	204, 674, 1013
GluI	GCNGC	1 cut(s)	684
GsaI	CCCAGC	2 cut(s)	121, 140
GsuI	CTGGAG	2 cut(s)	325, 806
HaeIII	GGCC	1 cut(s)	292
HgaI	GACGC	1 cut(s)	508
Hin1II	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	7 cut(s)	338, 362, 409, 697, 779, 934, 1004
HphI	GGTGA	2 cut(s)	124, 639
Hpy166II	GTNNAC	2 cut(s)	313, 337
Hpy188I	TCNGA	2 cut(s)	39, 694
Hpy188III	TCNNGA	3 cut(s)	533, 785, 941
Hpy8I	GTNNAC	2 cut(s)	313, 337
HpyAV	CCTTC	5 cut(s)	103, 105, 352, 535, 976
HpyCH4III	ACNGT	6 cut(s)	58, 405, 417, 767, 795, 1019
HpyCH4V	TGCA	6 cut(s)	287, 428, 509, 683, 1010, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
HpyF3I	CTNAG	3 cut(s)	70, 669, 693
Hsp92II	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
Kzo9I	GATC	2 cut(s)	82, 628
LmnI	GCTCC	3 cut(s)	380, 544, 839
Lsp1109I	GCAGC	1 cut(s)	695
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	3 cut(s)	204, 674, 1013
MaeIII	GTNAC	3 cut(s)	140, 475, 645
MalI	GATC	2 cut(s)	84, 630
MboI	GATC	2 cut(s)	82, 628
MfeI	CAATTG	2 cut(s)	483, 678
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	9 cut(s)	483, 591, 678, 720, 813, 926, 946, 1026, 1069
MlyI	GAGTC	3 cut(s)	332, 691, 943
MmeI	TCCRAC	3 cut(s)	60, 151, 1046
MnlI	CCTC	4 cut(s)	59, 67, 118, 856
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	5 cut(s)	237, 348, 453, 549, 744
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	136
MspCI	CTTAAG	2 cut(s)	452, 548
MunI	CAATTG	2 cut(s)	483, 678
MwoI	GCNNNNNNNGC	3 cut(s)	446, 674, 683
NdeII	GATC	2 cut(s)	82, 628
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	7 cut(s)	65, 226, 272, 520, 605, 919, 972
NlaIV	GGNNCC	1 cut(s)	867
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	475, 645
NspI	RCATGY	1 cut(s)	972
PaeI	GCATGC	1 cut(s)	972
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	4 cut(s)	362, 409, 779, 1004
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	3 cut(s)	332, 691, 942
PpsI	GAGTC	3 cut(s)	332, 691, 942
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	2 cut(s)	117, 136
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	528, 727
RsaNI	GTAC	2 cut(s)	527, 726
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	5 cut(s)	237, 348, 453, 549, 744
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	2 cut(s)	82, 628
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	3 cut(s)	332, 691, 943
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	3 cut(s)	104, 452, 548
SmoI	CTYRAG	3 cut(s)	104, 452, 548
SphI	GCATGC	1 cut(s)	972
Sse9I	AATT	9 cut(s)	483, 591, 678, 720, 813, 926, 946, 1026, 1069
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	3 cut(s)	204, 674, 1013
TaaI	ACNGT	6 cut(s)	58, 405, 417, 767, 795, 1019
TaqI	TCGA	3 cut(s)	407, 617, 899
TasI	AATT	9 cut(s)	483, 591, 678, 720, 813, 926, 946, 1026, 1069
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	4 cut(s)	362, 409, 779, 1004
Tru1I	TTAA	5 cut(s)	237, 348, 453, 549, 744
Tru9I	TTAA	5 cut(s)	237, 348, 453, 549, 744
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	475, 645
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	2 cut(s)	475, 645
TspDTI	ATGAA	8 cut(s)	78, 371, 533, 554, 624, 674, 932, 978
TspRI	CASTG	1 cut(s)	390
Vha464I	CTTAAG	2 cut(s)	452, 548
XapI	RAATTY	1 cut(s)	946
XceI	RCATGY	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	3 cut(s)	204, 674, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.