Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004762

Physical Location & Seq

Genomic Coordinates Reverse (-)

64193629 .. 64197613

Gene Structure 3985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCGCCAAAAAAGGCTACCAGAGATGAAAGTCCTCCACCGTCCGATCCTCACGGAATCTTCGCCGGAATGGTCGTCTTCTTAGTCGAAGACGGAGTTCAGAACCGTCGCTTTCAGATTTGGAAGCAAAAACTGGTTCAAATGGGAGCTACTATAGAAGACCATCTATCCAAAAGGGTCACACACGTATTTGCTATGAACCCAGAAGCCCTCTTGCAAAAAGTGGGCGGTGATCAATGGAGTCTCTTTAAAGGAAGAGTTGTACTCTATCAGTGGCTAGAGGACAGCTTGAGCTCAGGGAAGAGAGTACCAGAAGATTTGTACCATCTGAAATTGGAGGCAGACAAGTCTTCTAGTGACTACATTTCCAGTGATGAAGAAACCCCAAAACCGAAAAAGCAAAGATCCTCATCTCCTGATGAGTTGCCTCATACTCAGAGCCCCAAAACCCCTAAAGCCCCAAATAAGGATCAGGTCACAGCATTGCAGTCATCCACGCCCTACAGCCCACCTGATTTAAACAAAGACATAACCCAGATATTTGGGAAGCTTATCAACATATATAGAGCATTGGGCGATGACCGAAGATCTTTTAGCTATTATAAGGCTATAACAGTTATAGAGAAGTTGCCTTTCAAGATTCAAAGTGCAGAACAAGTTAAGGGCCTCCCCGGCATTGGAAAGTCAATGCAAGATCATATTCAAGAGATAGTGACTACCGGAAAGCTATCCAAGTTGGAGCACTTTGAAACAGATGAAAAGGTAAAAACAATCAGCTTATTCGTGGAAATATGGGGTGTAGGTCCAGCTACTGCACTAAAATTATTTGAGAAAGGACATCGTACATTAGATGATTTGAAGAATGAAGATTTGTTGACACATTCACAGAAGTTGGGGTTAAGATATTATGAGGATATCAAACAGAGGATCCCACGGCATGAGGCTCAAGGGATGGAACTTCTTCTACAAAAAGCCGCAGAGGGTGTTTTGCCTGGGGTGGTTGTTGTATGTGGAGGGTCATATAGACGTGGGAAATCTTCTTGTGGGGATCTGGACATTGTAATTACTCATCCAGATGGGAACAGTCATAAAGGTTTTTTACCAAAGTATGTAAAGCATCTAAAGGATATGAAGTTCCTAAGGGAGGATTTGGTTTTCGTTACACACAGCGAGGAGAGTACTGATTCTGGTGTCGACACATATTTTGGGCTTTGTACATATCCTGGACGAGAGCTGCGGCACCGCATAGATTTCAAGGGGGCAAAAGCTGGCGCAAGCTTGAAATTTGACACAGAGAAGGAGCTCTTTGACTTTCTGGGGTTTCCTTGGCTTGAACCACATGAGAGAAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

451

Amino Acids

50.96

Weight (kDa)

7.73

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_8	PF14716	174 - 243	4.7e-16	Helix-hairpin-helix domain
DNA_pol_lambd_f	PF10391	260 - 306	2.2e-19	Fingers domain of DNA polymerase lambda
DNA_pol_B_palm	PF14792	309 - 419	4.5e-27	DNA polymerase beta palm
DNA_pol_B_thumb	PF14791	422 - 450	2.4e-06	DNA polymerase beta thumb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10520 AT1G10520
fragaria_vesca	FvH4_4g35010 FvH4_4g35030
malus_domestica	MD16G1086600.v1.1 MD16G1086700.v1.1
prunus_persica	Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1
pyrus_communis	pycom16g07470
rosa_chinensis	RchiOBHm_Chr4g0444541 RchiOBHm_Chr4g0444551
rosa_laevigata	RLG00000005822 RLG00000005825
rosa_multiflora	Rmu_sc0003839.1_g000005 Rmu_sc0012648.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385000 Rroxscaffold_5G00385010
rosa_rugosa	Rorug04G0353500 Rorug04G0353600 Rorug04G0353700 Rorug04G0353800
rosa_samantha	Rh4AG413800 Rh4BG425500 Rh4CG439900 Rh4CG440200 Rh4DG420800 Rh4DG421100
rosa_wichuraiana	Rw4G035540 Rw4G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AccB1I	GGYRCC	2 cut(s)	4, 1239
AccI	GTMKAC	1 cut(s)	1194
AciI	CCGC	4 cut(s)	228, 975, 1237, 1243
AclWI	GGATC	6 cut(s)	41, 399, 477, 922, 935, 1056
AcsI	RAATTY	1 cut(s)	1283
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	6 cut(s)	264, 309, 323, 844, 1180, 1216
AfiI	CCNNNNNNNGG	3 cut(s)	466, 677, 1144
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	9 cut(s)	140, 637, 644, 704, 749, 859, 1255, 1282, 1334
AjiI	CACGTC	1 cut(s)	1028
AjnI	CCWGG	2 cut(s)	991, 1222
AloI	GAACNNNNNNTCC	2 cut(s)	1118, 1150
Alw21I	GWGCWC	3 cut(s)	296, 744, 1305
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	6 cut(s)	41, 399, 477, 922, 935, 1056
AlwNI	CAGNNNCTG	1 cut(s)	812
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	1 cut(s)	1234
ApoI	RAATTY	1 cut(s)	1283
ArsI	GACNNNNNNTTYG	2 cut(s)	1187, 1219
Asp700I	GAANNNNTTC	1 cut(s)	960
AspLEI	GCGC	2 cut(s)	7, 1274
AspS9I	GGNCC	2 cut(s)	664, 803
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	803
AxyI	CCTNAGG	1 cut(s)	1139
BamHI	GGATCC	1 cut(s)	927
BanI	GGYRCC	2 cut(s)	4, 1239
BanII	GRGCYC	3 cut(s)	296, 443, 1305
BbsI	GAAGAC	4 cut(s)	70, 96, 165, 342
Bbv12I	GWGCWC	3 cut(s)	296, 744, 1305
BbvI	GCAGC	1 cut(s)	1221
BccI	CCATC	4 cut(s)	171, 333, 946, 1070
BceAI	ACGGC	1 cut(s)	950
BciT130I	CCWGG	2 cut(s)	993, 1224
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	278, 354
BfmI	CTRYAG	2 cut(s)	153, 502
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	672
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	975, 1235, 1238
BlsI	GCNGC	3 cut(s)	976, 1236, 1239
BmcAI	AGTACT	1 cut(s)	1180
Bme1390I	CCNGG	3 cut(s)	672, 993, 1224
Bme18I	GGWCC	1 cut(s)	803
BmgBI	CACGTC	1 cut(s)	1028
BmgT120I	GGNCC	2 cut(s)	664, 803
BmiI	GGNNCC	3 cut(s)	6, 929, 1241
BmrFI	CCNGG	3 cut(s)	672, 993, 1224
BmsI	GCATC	1 cut(s)	1126
BpiI	GAAGAC	4 cut(s)	70, 96, 165, 342
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	310, 930
BpuMI	CCSGG	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	670, 932, 992, 1325
BsaWI	WCCGGW	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 677, 1144
Bse1I	ACTGG	2 cut(s)	138, 369
Bse21I	CCTNAGG	1 cut(s)	1139
Bse3DI	GCAATG	1 cut(s)	482
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	993, 1224
BseDI	CCNNGG	4 cut(s)	670, 932, 992, 1325
BseGI	GGATG	3 cut(s)	491, 957, 1069
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	3 cut(s)	466, 677, 1144
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	2 cut(s)	309, 449
BseNI	ACTGG	2 cut(s)	138, 369
BseRI	GAGGAG	1 cut(s)	1187
BseXI	GCAGC	1 cut(s)	1221
BsgI	GTGCAG	2 cut(s)	669, 798
BshFI	GGCC	1 cut(s)	666
BshNI	GGYRCC	2 cut(s)	4, 1239
BsiHKAI	GWGCWC	3 cut(s)	296, 744, 1305
BsiSI	CCGG	3 cut(s)	66, 672, 720
BslI	CCNNNNNNNGG	3 cut(s)	466, 677, 1144
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	666
Bsp1286I	GDGCHC	4 cut(s)	296, 443, 744, 1305
Bsp1407I	TGTACA	1 cut(s)	1214
Bsp143I	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
BspACI	CCGC	4 cut(s)	228, 975, 1237, 1243
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	2 cut(s)	308, 448
BspLI	GGNNCC	3 cut(s)	6, 929, 1241
BspPI	GGATC	6 cut(s)	41, 399, 477, 922, 935, 1056
BspT107I	GGYRCC	2 cut(s)	4, 1239
BsrDI	GCAATG	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	1214
BsrI	ACTGG	2 cut(s)	138, 369
BssECI	CCNNGG	4 cut(s)	670, 932, 992, 1325
BssMI	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	1325
Bst2UI	CCWGG	2 cut(s)	993, 1224
Bst4CI	ACNGT	4 cut(s)	42, 107, 616, 1085
Bst6I	CTCTTC	2 cut(s)	250, 296
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	1214
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	1270, 1276
BstDEI	CTNAG	4 cut(s)	82, 295, 435, 1139
BstDSI	CCRYGG	1 cut(s)	932
BstENI	CCTNNNNNAGG	1 cut(s)	1142
BstF5I	GGATG	3 cut(s)	491, 957, 1069
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 1274
BstKTI	GATC	8 cut(s)	49, 235, 407, 472, 590, 697, 930, 1051
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	672
BstNI	CCWGG	2 cut(s)	993, 1224
BstSCI	CCNGG	3 cut(s)	670, 991, 1222
BstSFI	CTRYAG	2 cut(s)	153, 502
BstV1I	GCAGC	1 cut(s)	1221
BstV2I	GAAGAC	4 cut(s)	70, 96, 165, 342
BstX2I	RGATCY	4 cut(s)	404, 587, 927, 1048
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	4 cut(s)	404, 587, 927, 1048
Bsu36I	CCTNAGG	1 cut(s)	1139
BsuRI	GGCC	1 cut(s)	666
BtgI	CCRYGG	1 cut(s)	932
BtgZI	GCGATG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	1028
BtsCI	GGATG	3 cut(s)	491, 957, 1069
BtsIMutI	CAGTG	2 cut(s)	278, 376
Cac8I	GCNNGC	2 cut(s)	1270, 1276
CaiI	CAGNNNCTG	1 cut(s)	812
CfoI	GCGC	2 cut(s)	7, 1274
Cfr13I	GGNCC	2 cut(s)	664, 803
Csp6I	GTAC	6 cut(s)	263, 308, 322, 843, 1179, 1215
CviAII	CATG	2 cut(s)	938, 1340
CviQI	GTAC	6 cut(s)	263, 308, 322, 843, 1179, 1215
DdeI	CTNAG	4 cut(s)	82, 295, 435, 1139
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	8 cut(s)	48, 234, 406, 471, 589, 696, 929, 1050
DpnII	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
DraI	TTTAAA	2 cut(s)	250, 519
Eam1104I	CTCTTC	2 cut(s)	250, 296
EarI	CTCTTC	2 cut(s)	250, 296
Ecl136II	GAGCTC	2 cut(s)	294, 1303
Eco130I	CCWWGG	1 cut(s)	1325
Eco24I	GRGCYC	3 cut(s)	296, 443, 1305
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	1 cut(s)	803
Eco53kI	GAGCTC	2 cut(s)	294, 1303
Eco81I	CCTNAGG	1 cut(s)	1139
EcoICRI	GAGCTC	2 cut(s)	294, 1303
EcoNI	CCTNNNNNAGG	1 cut(s)	1142
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	991, 1222
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	1325
EcoT38I	GRGCYC	3 cut(s)	296, 443, 1305
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	1325
FaeI	CATG	2 cut(s)	941, 1343
FalI	AAGNNNNNCTT	2 cut(s)	1289, 1321
FatI	CATG	2 cut(s)	937, 1339
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	1194
Fnu4HI	GCNGC	3 cut(s)	975, 1235, 1238
FokI	GGATG	3 cut(s)	478, 964, 1056
FriOI	GRGCYC	3 cut(s)	296, 443, 1305
Fsp4HI	GCNGC	3 cut(s)	975, 1235, 1238
FspBI	CTAG	2 cut(s)	278, 354
GlaI	GCGC	2 cut(s)	6, 1273
GluI	GCNGC	3 cut(s)	975, 1235, 1238
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	3 cut(s)	66, 672, 720
HhaI	GCGC	2 cut(s)	7, 1274
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	941, 1343
Hin6I	GCGC	2 cut(s)	5, 1272
HinP1I	GCGC	2 cut(s)	5, 1272
HincII	GTYRAC	2 cut(s)	876, 1195
HindII	GTYRAC	2 cut(s)	876, 1195
HindIII	AAGCTT	2 cut(s)	548, 1276
HinfI	GANTC	4 cut(s)	57, 241, 640, 1184
HpaII	CCGG	3 cut(s)	66, 672, 720
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	876, 1195
Hpy188I	TCNGA	5 cut(s)	46, 102, 117, 330, 438
Hpy188III	TCNNGA	5 cut(s)	416, 637, 704, 1052, 1073
Hpy8I	GTNNAC	2 cut(s)	876, 1195
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	1291
HpyCH4III	ACNGT	4 cut(s)	42, 107, 616, 1085
HpyCH4IV	ACGT	2 cut(s)	186, 1027
HpyCH4V	TGCA	5 cut(s)	217, 487, 650, 691, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	672
HpyF3I	CTNAG	4 cut(s)	82, 295, 435, 1139
HpySE526I	ACGT	2 cut(s)	186, 1027
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	941, 1343
HspAI	GCGC	2 cut(s)	5, 1272
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
LmnI	GCTCC	3 cut(s)	146, 739, 1300
Lsp1109I	GCAGC	1 cut(s)	1221
LweI	GCATC	1 cut(s)	1126
MaeI	CTAG	2 cut(s)	278, 354
MaeII	ACGT	2 cut(s)	186, 1027
MaeIII	GTNAC	5 cut(s)	178, 356, 475, 712, 1159
MalI	GATC	8 cut(s)	48, 234, 406, 471, 589, 696, 929, 1050
MboI	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
MflI	RGATCY	4 cut(s)	404, 587, 927, 1048
MhlI	GDGCHC	4 cut(s)	296, 443, 744, 1305
MluCI	AATT	4 cut(s)	332, 821, 1062, 1283
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	4 cut(s)	249, 518, 660, 899
MslI	CAYNNNNRTG	1 cut(s)	1074
MspI	CCGG	3 cut(s)	66, 672, 720
MspR9I	CCNGG	3 cut(s)	672, 993, 1224
MvaI	CCWGG	2 cut(s)	993, 1224
MwoI	GCNNNNNNNGC	1 cut(s)	672
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	672
NdeII	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
NlaIII	CATG	2 cut(s)	941, 1343
NlaIV	GGNNCC	3 cut(s)	6, 929, 1241
NmuCI	GTSAC	4 cut(s)	178, 356, 475, 712
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	3 cut(s)	57, 640, 1184
PfoI	TCCNGGA	1 cut(s)	1222
PkrI	GCNGC	3 cut(s)	976, 1236, 1239
PleI	GAGTC	1 cut(s)	249
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	603
Psp124BI	GAGCTC	2 cut(s)	296, 1305
Psp6I	CCWGG	2 cut(s)	991, 1222
PspGI	CCWGG	2 cut(s)	991, 1222
PspN4I	GGNNCC	3 cut(s)	6, 929, 1241
PspPI	GGNCC	2 cut(s)	664, 803
PsrI	GAACNNNNNNTAC	2 cut(s)	948, 980
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	4 cut(s)	404, 587, 927, 1048
RsaI	GTAC	6 cut(s)	264, 309, 323, 844, 1180, 1216
RsaNI	GTAC	6 cut(s)	263, 308, 322, 843, 1179, 1215
RseI	CAYNNNNRTG	1 cut(s)	1074
SacI	GAGCTC	2 cut(s)	296, 1305
SalI	GTCGAC	1 cut(s)	1193
SaqAI	TTAA	4 cut(s)	249, 518, 660, 899
SatI	GCNGC	3 cut(s)	975, 1235, 1238
Sau3AI	GATC	8 cut(s)	46, 232, 404, 469, 587, 694, 927, 1048
Sau96I	GGNCC	2 cut(s)	664, 803
ScaI	AGTACT	1 cut(s)	1180
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	3 cut(s)	672, 993, 1224
SduI	GDGCHC	4 cut(s)	296, 443, 744, 1305
SfaNI	GCATC	1 cut(s)	1126
SfcI	CTRYAG	2 cut(s)	153, 502
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	2 cut(s)	289, 945
SmoI	CTYRAG	2 cut(s)	289, 945
Sse9I	AATT	4 cut(s)	332, 821, 1062, 1283
SsiI	CCGC	4 cut(s)	228, 975, 1237, 1243
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	278, 354
SstI	GAGCTC	2 cut(s)	296, 1305
StyD4I	CCNGG	3 cut(s)	670, 991, 1222
StyI	CCWWGG	1 cut(s)	1325
TaaI	ACNGT	4 cut(s)	42, 107, 616, 1085
TaiI	ACGT	2 cut(s)	189, 1030
TaqI	TCGA	2 cut(s)	87, 1194
TaqII	GACCGA	1 cut(s)	597
TasI	AATT	4 cut(s)	332, 821, 1062, 1283
TatI	WGTACW	3 cut(s)	262, 1178, 1214
TauI	GCSGC	2 cut(s)	977, 1240
TfiI	GAWTC	3 cut(s)	57, 640, 1184
Tru1I	TTAA	4 cut(s)	249, 518, 660, 899
Tru9I	TTAA	4 cut(s)	249, 518, 660, 899
TscAI	CASTG	2 cut(s)	278, 376
TseFI	GTSAC	4 cut(s)	178, 356, 475, 712
TseI	GCWGC	1 cut(s)	1234
Tsp45I	GTSAC	4 cut(s)	178, 356, 475, 712
TspDTI	ATGAA	6 cut(s)	42, 212, 390, 771, 879, 1145
TspGWI	ACGGA	2 cut(s)	69, 108
TspRI	CASTG	2 cut(s)	278, 376
VpaK11BI	GGWCC	1 cut(s)	803
XagI	CCTNNNNNAGG	1 cut(s)	1142
XapI	RAATTY	1 cut(s)	1283
XmiI	GTMKAC	1 cut(s)	1194
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	2 cut(s)	278, 354
ZrmI	AGTACT	1 cut(s)	1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.