Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004762

Physical Location & Seq

Genomic Coordinates Forward (+)

52605089 .. 52608506

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGACCCTCTGCGCCAGAGCTTCTAAAGCTTTCAAGGTACGCCTCCCTCCTCTACCCCTCTCCTCTTCCTCTTCCTTCCACTCCCCTTCCCTCCCCGCCGCCACGTCACCTCTCTCGGACACCCACTACCGCGACCTCATCTTCTCCACCATCCGAACAACCCCCTCCGCTTTCCGCACCCGCGACTGGTCCTCCTCCCACCGCTTCCGCCCCGTGATTTCCGACCCGGACCTCTTCGTCCGCGTCCTCGCCCAGATTCGGGCCAGGCCCACCGTCGCCCTCCGGTTCTTCCGATGGGCCGAGGCCCAGCCGGAGGTTAAGCGGTCCGAGTTTGTCTTCTGTGTCATTCTCGAGATTCTGGCCCACCACAACATGATGAGGTCTGCGTATTGGGTGATGGAGAGAGTGATCAGTGTAGATATGCACCATGGCATTGTGGGTGTTTTGATTGATGAGTATGTTTTCGCAAAGGTCTCCGTCAAGCTGCTTGATCTCTTGTTGTGGGTGTGTGCCAACAAGTTGTTGGTGGAGCAATGCTTGTGGATTTTCGACAAGATGATATCCAACGGGTTGTTGCCGGATGTGAATAACTGTAATAGGCTTCTTAGGATGCTTAGGGATAGCAACCTTGCGGCGAGTAGAGCTAAAGAGGAGGTTTATAGGAGGATGGCTGAGGCCGGGATCAACCCCACCATTGTTACTTACAACACTATGTTGGATTCGTTTTGCAAGCAAGGGGAAGTGCAGCAGGCGCTTCACCTTGTCTCGGAGATGCAGAAGGTGGAGTGCTTCCCCAATGATGTGACCTACAATGTGTTGATCAATGGGTTGTCGAAGAAAGGGAAACTGGAGCAGGCCCAGGGACTGTTGCAAGATATGTTGAAGTCAGGATTGAGGGCTTCAGCCTACACGTATAACCCTTTGATTTGTGCGTATTGCAAGAGGGGACTGCTTGCAGAGGCATTGAATCTCGTGGAAGAGATGGCGGCAAGAGGAGCCGCTCCTACTGTGGCTACTTATAACTCGATAATGTATGGCCTCTGCAAGTGGGGGGGCAGAGTTACTGAGGCCAGGGACTGGTTTACTGATATGTTAAAGAAACGATTGTCGCCTGATATAGTTTCGTACAACACTCTTATATATGGGTATTGTAGGTTAGGGGACATATGGAATGCTTTTCTACTGTTTGATGAGTTGACACGGAGGCCTCTCACTCCTACTGTCGTTACTTATAATACACTCCTGGATGGTCTATGCAGATTGGGGGAGTTCGAGGTTGCTCAGCAGCTTAAAAAAGAAATGGTCAATCAAGGAATTTTCCCTGATGTTTTTACATATACTATTCTTGTAAATGGATATTGCAAGGCAGGAAATTTATCAAAGGCCAGGGAGTTATTTCATGAGATGTTGCATAACGGACTGGAGCCGGATCGCTTTGCATACAATACTCGAATAGTGGGGGAATTGGATCTTGGTGACCCATCCAAGGCATTTAATATGCAAGAAGAAATGCTAGCAAAGGGTTTGCCTCCTGATTTGTTCACACATAATGTTTTTGTGGATGGAATATGTAAATTGGGCAACTTGAGTGAAGCATATAACATGTTGCAGAAAATGGTACATGATGGTCTCGTGCCAGATCATGTAACGTACACTAGCATCATTCATGCTTACCTGGTAAGTGGCCGTCTCATGAAGGCTAGAGAGGTATATGATGAGATGCTGAGCAAAGACGTGCATCCCTCAGTTGTAACTTATACAGTACTGATTCATGCTCATGCATCTAAGGGGAGACTGGAACTAGCATATATGTACTTCTCAGAGATGCAAGAGAAGCGTGTTCTGCCAAATGTTGTTACCTACAATGCTCTGATAAATGGTCTTTGTAAAGCTATGAGAATGGACCAGGCTTACGAGTTCTTTACTCAGATGGAGGAAAAGGGTATACTTCCAAATAAGTATACATACACTATTCTAATAAATGAGAACTGCAGCATCGGCAATTGGAAGGAGGCTTTGAGATTGTACAAACAGATGCTTGACAGAGAGATTGAGCCTGACTTCTGTACACACACTGCACTTTTTAAGCAACTAGACAGAGACTATAAACTGCATGCAGTTCATTGCCTTGAGAGTTTAATTCTTGCCACAGAAGAATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

721

Amino Acids

82.26

Weight (kDa)

7.53

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	170 - 282	8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	182 - 242	3.8e-08	Pentatricopeptide repeat domain
PPR_3	PF13812	221 - 275	1.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	227 - 259	5.9e-11	PPR repeat
PPR_2	PF13041	230 - 279	1.6e-18	PPR repeat family
PPR	PF01535	233 - 260	1.6e-06	PPR repeat
PPR_long	PF17177	251 - 343	6.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	263 - 293	6.2e-09	PPR repeat
PPR_2	PF13041	265 - 309	1.9e-12	PPR repeat family
PPR	PF01535	268 - 298	1.2e-07	PPR repeat
PPR_long	PF17177	277 - 416	4.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	289 - 344	4.3e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	292 - 398	5.3e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	297 - 328	5.9e-09	PPR repeat
PPR_2	PF13041	302 - 349	9e-14	PPR repeat family
PPR	PF01535	303 - 332	5.9e-06	PPR repeat
PPR_2	PF13041	352 - 385	1.7e-07	PPR repeat family
PPR_3	PF13812	362 - 416	3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	368 - 398	1.6e-10	PPR repeat
PPR_2	PF13041	371 - 420	3e-16	PPR repeat family
PPR	PF01535	374 - 402	3.2e-06	PPR repeat
PPR_1	PF12854	404 - 435	3.4e-10	PPR repeat
PPR_2	PF13041	406 - 455	4.8e-19	PPR repeat family
PPR	PF01535	409 - 439	2.8e-06	PPR repeat
PPR_3	PF13812	430 - 483	2.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	438 - 469	1.1e-14	PPR repeat
PPR	PF01535	444 - 474	1.7e-09	PPR repeat
PPR_2	PF13041	449 - 483	1.2e-08	PPR repeat family
PPR_2	PF13041	479 - 525	1.1e-07	PPR repeat family
PPR_1	PF12854	507 - 540	3.7e-08	PPR repeat
PPR_2	PF13041	517 - 558	2.2e-08	PPR repeat family
PPR_3	PF13812	535 - 586	2.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	542 - 574	1.3e-06	PPR repeat
PPR_2	PF13041	546 - 594	4.4e-14	PPR repeat family
PPR	PF01535	549 - 578	2.4e-06	PPR repeat
PPR_long	PF17177	564 - 675	3.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	570 - 626	3.3e-14	Pentatricopeptide repeat domain
PPR_2	PF13041	581 - 630	1.1e-17	PPR repeat family
PPR	PF01535	584 - 613	3.5e-06	PPR repeat
PPR_1	PF12854	613 - 645	7.1e-14	PPR repeat
PPR_2	PF13041	616 - 664	5.6e-20	PPR repeat family
PPR	PF01535	619 - 649	2.3e-08	PPR repeat
PPR_1	PF12854	647 - 679	1.3e-07	PPR repeat
PPR_2	PF13041	661 - 698	2.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10520 AT1G10520
fragaria_vesca	FvH4_4g35010 FvH4_4g35030
malus_domestica	MD16G1086600.v1.1 MD16G1086700.v1.1
prunus_persica	Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1
pyrus_communis	pycom16g07470
rosa_chinensis	RchiOBHm_Chr4g0444541 RchiOBHm_Chr4g0444551
rosa_laevigata	RLG00000005822 RLG00000005825
rosa_multiflora	Rmu_sc0003839.1_g000005 Rmu_sc0012648.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385000 Rroxscaffold_5G00385010
rosa_rugosa	Rorug04G0353500 Rorug04G0353600 Rorug04G0353700 Rorug04G0353800
rosa_samantha	Rh4AG413800 Rh4BG425500 Rh4CG439900 Rh4CG440200 Rh4DG420800 Rh4DG421100
rosa_wichuraiana	Rw4G035540 Rw4G035550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1020, 1233
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	1077
AccBSI	CCGCTC	1 cut(s)	1001
AccI	GTMKAC	2 cut(s)	1945, 1961
AccII	CGCG	3 cut(s)	132, 183, 243
AclWI	GGATC	3 cut(s)	689, 1437, 1476
AcoI	YGGCCR	1 cut(s)	1684
AcsI	RAATTY	2 cut(s)	1314, 1372
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	8 cut(s)	39, 1127, 1620, 1652, 1764, 1814, 2027, 2068
AfiI	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 766, 1077, 1486
AflIII	ACRYGT	2 cut(s)	909, 1602
AgsI	TTSAA	3 cut(s)	34, 883, 967
AjiI	CACGTC	2 cut(s)	105, 1735
AjnI	CCWGG	7 cut(s)	263, 858, 1070, 1242, 1385, 1674, 1905
AjuI	GAANNNNNNNTTGG	2 cut(s)	1455, 1487
AluBI	AGCT	7 cut(s)	20, 29, 484, 644, 1288, 1892, 2163
AluI	AGCT	7 cut(s)	20, 29, 484, 644, 1288, 1892, 2163
Alw26I	GTCTC	6 cut(s)	478, 769, 1634, 1694, 1786, 2094
AlwI	GGATC	3 cut(s)	689, 1437, 1476
AlwNI	CAGNNNCTG	2 cut(s)	865, 1077
Ama87I	CYCGRG	1 cut(s)	350
ApeKI	GCWGC	4 cut(s)	484, 745, 1285, 1992
ApoI	RAATTY	2 cut(s)	1314, 1372
AspLEI	GCGC	2 cut(s)	14, 754
AsuC2I	CCSGG	2 cut(s)	227, 679
AsuHPI	GGTGA	4 cut(s)	99, 406, 749, 1487
AsuNHI	GCTAGC	1 cut(s)	1513
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	4 cut(s)	189, 229, 324, 1903
BauI	CACGAG	2 cut(s)	971, 1631
BbsI	GAAGAC	1 cut(s)	328
BbvCI	CCTCAGC	1 cut(s)	672
BbvI	GCAGC	4 cut(s)	471, 757, 1297, 2004
BceAI	ACGGC	1 cut(s)	1671
BciT130I	CCWGG	7 cut(s)	265, 860, 1072, 1244, 1387, 1676, 1907
BclI	TGATCA	2 cut(s)	408, 819
BcnI	CCSGG	2 cut(s)	227, 679
BcoDI	GTCTC	6 cut(s)	478, 769, 1634, 1694, 1786, 2094
BfaI	CTAG	7 cut(s)	1514, 1656, 1701, 1802, 2093, 2160, 2164
BfmI	CTRYAG	1 cut(s)	1990
BfoI	RGCGCY	1 cut(s)	755
BisI	GCNGC	8 cut(s)	99, 485, 633, 746, 987, 999, 1286, 1993
BlpI	GCTNAGC	2 cut(s)	1281, 1724
BlsI	GCNGC	8 cut(s)	100, 486, 634, 747, 988, 1000, 1287, 1994
BmcAI	AGTACT	1 cut(s)	1764
Bme1390I	CCNGG	9 cut(s)	227, 265, 679, 860, 1072, 1244, 1387, 1676, 1907
Bme18I	GGWCC	4 cut(s)	189, 229, 324, 1903
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	2 cut(s)	105, 1735
BmiI	GGNNCC	2 cut(s)	997, 1425
BmrFI	CCNGG	9 cut(s)	227, 265, 679, 860, 1072, 1244, 1387, 1676, 1907
BmsI	GCATC	9 cut(s)	600, 762, 1668, 1710, 1747, 1790, 1815, 2004, 2025
BmtI	GCTAGC	1 cut(s)	1517
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	869, 1442
Bpu10I	CCTNAGC	2 cut(s)	614, 672
Bpu1102I	GCTNAGC	2 cut(s)	1281, 1724
BpuEI	CTTGAG	2 cut(s)	1606, 2150
BpuMI	CCSGG	2 cut(s)	227, 679
BsaAI	YACGTR	1 cut(s)	912
BsaI	GGTCTC	2 cut(s)	478, 1634
BsaJI	CCNNGG	7 cut(s)	300, 427, 858, 859, 1071, 1386, 1485
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 766, 1077, 1486
Bse1I	ACTGG	5 cut(s)	191, 852, 1082, 1425, 1800
Bse3DI	GCAATG	2 cut(s)	539, 2122
BseBI	CCWGG	7 cut(s)	265, 860, 1072, 1244, 1387, 1676, 1907
BseDI	CCNNGG	7 cut(s)	300, 427, 858, 859, 1071, 1386, 1485
BseGI	GGATG	8 cut(s)	150, 586, 615, 672, 1252, 1481, 1567, 1738
BseLI	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 766, 1077, 1486
BseMI	GCAATG	2 cut(s)	539, 2122
BseMII	CTCAG	7 cut(s)	663, 1056, 1295, 1715, 1758, 1833, 1940
BseNI	ACTGG	5 cut(s)	191, 852, 1082, 1425, 1800
BseRI	GAGGAG	5 cut(s)	39, 52, 184, 665, 1008
BseXI	GCAGC	4 cut(s)	471, 757, 1297, 2004
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	764, 2061
Bsh1236I	CGCG	3 cut(s)	132, 183, 243
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	6 cut(s)	227, 283, 311, 578, 678, 1427
BslFI	GGGAC	4 cut(s)	876, 960, 1088, 1175
BslI	CCNNNNNNNGG	7 cut(s)	186, 258, 259, 313, 766, 1077, 1486
BsmAI	GTCTC	6 cut(s)	478, 769, 1634, 1694, 1786, 2094
BsmBI	CGTCTC	1 cut(s)	1694
BsmFI	GGGAC	4 cut(s)	876, 960, 1088, 1175
BsmI	GAATGC	1 cut(s)	1177
Bso31I	GGTCTC	2 cut(s)	478, 1634
BsoBI	CYCGRG	1 cut(s)	350
Bsp1407I	TGTACA	2 cut(s)	2025, 2066
Bsp143I	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
Bsp1720I	GCTNAGC	2 cut(s)	1281, 1724
Bsp19I	CCATGG	1 cut(s)	427
BspCNI	CTCAG	7 cut(s)	664, 1057, 1294, 1716, 1757, 1832, 1939
BspFNI	CGCG	3 cut(s)	132, 183, 243
BspHI	TCATGA	2 cut(s)	1399, 1692
BspLI	GGNNCC	2 cut(s)	997, 1425
BspMAI	CTGCAG	1 cut(s)	1994
BspOI	GCTAGC	1 cut(s)	1517
BspPI	GGATC	3 cut(s)	689, 1437, 1476
BspTNI	GGTCTC	2 cut(s)	478, 1634
BsrBI	CCGCTC	1 cut(s)	1001
BsrDI	GCAATG	2 cut(s)	539, 2122
BsrGI	TGTACA	2 cut(s)	2025, 2066
BsrI	ACTGG	5 cut(s)	191, 852, 1082, 1425, 1800
BssECI	CCNNGG	7 cut(s)	300, 427, 858, 859, 1071, 1386, 1485
BssMI	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
BssNAI	GTATAC	2 cut(s)	1946, 1962
BssSI	CACGAG	2 cut(s)	971, 1631
BssT1I	CCWWGG	2 cut(s)	427, 1485
Bst1107I	GTATAC	2 cut(s)	1946, 1962
Bst2BI	CACGAG	2 cut(s)	971, 1631
Bst2UI	CCWGG	7 cut(s)	265, 860, 1072, 1244, 1387, 1676, 1907
Bst4CI	ACNGT	7 cut(s)	274, 593, 867, 1009, 1185, 1222, 1762
Bst6I	CTCTTC	4 cut(s)	70, 76, 239, 972
BstAUI	TGTACA	2 cut(s)	2025, 2066
BstBAI	YACGTR	1 cut(s)	912
BstC8I	GCNNGC	6 cut(s)	731, 750, 855, 954, 1515, 2115
BstDSI	CCRYGG	1 cut(s)	427
BstEII	GGTNACC	1 cut(s)	1475
BstF5I	GGATG	8 cut(s)	150, 586, 615, 672, 1252, 1481, 1567, 1738
BstFNI	CGCG	3 cut(s)	132, 183, 243
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	2 cut(s)	14, 754
BstKTI	GATC	7 cut(s)	411, 493, 684, 822, 1432, 1471, 1642
BstMAI	GTCTC	6 cut(s)	478, 769, 1634, 1694, 1786, 2094
BstMBI	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 641, 751, 995, 1834, 1843, 1998
BstNI	CCWGG	7 cut(s)	265, 860, 1072, 1244, 1387, 1676, 1907
BstNSI	RCATGY	2 cut(s)	1606, 2117
BstPI	GGTNACC	1 cut(s)	1475
BstSCI	CCNGG	9 cut(s)	225, 263, 677, 858, 1070, 1242, 1385, 1674, 1905
BstSFI	CTRYAG	1 cut(s)	1990
BstUI	CGCG	3 cut(s)	132, 183, 243
BstV1I	GCAGC	4 cut(s)	471, 757, 1297, 2004
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	1468
BstYI	RGATCY	1 cut(s)	1468
BstZ17I	GTATAC	2 cut(s)	1946, 1962
BtgI	CCRYGG	1 cut(s)	427
BtrI	CACGTC	2 cut(s)	105, 1735
BtsCI	GGATG	8 cut(s)	150, 586, 615, 672, 1252, 1481, 1567, 1738
BtsI	GCAGTG	1 cut(s)	2073
BtsIMutI	CAGTG	2 cut(s)	418, 2073
Cac8I	GCNNGC	6 cut(s)	731, 750, 855, 954, 1515, 2115
CaiI	CAGNNNCTG	2 cut(s)	865, 1077
CciI	TCATGA	2 cut(s)	1399, 1692
CfoI	GCGC	2 cut(s)	14, 754
CpoI	CGGWCCG	1 cut(s)	324
CseI	GACGC	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	1674
Csp6I	GTAC	8 cut(s)	38, 1126, 1619, 1651, 1763, 1813, 2026, 2067
CspCI	CAANNNNNGTGG	2 cut(s)	521, 556
CspI	CGGWCCG	1 cut(s)	324
CviQI	GTAC	8 cut(s)	38, 1126, 1619, 1651, 1763, 1813, 2026, 2067
DpnI	GATC	7 cut(s)	410, 492, 683, 821, 1431, 1470, 1641
DpnII	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	1684
Eam1104I	CTCTTC	4 cut(s)	70, 76, 239, 972
EarI	CTCTTC	4 cut(s)	70, 76, 239, 972
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	427, 1485
Eco147I	AGGCCT	1 cut(s)	1207
Eco31I	GGTCTC	2 cut(s)	478, 1634
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	4 cut(s)	189, 229, 324, 1903
Eco57I	CTGAAG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	1475
EcoO65I	GGTNACC	1 cut(s)	1475
EcoRII	CCWGG	7 cut(s)	263, 858, 1070, 1242, 1385, 1674, 1905
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	427, 1485
EcoT22I	ATGCAT	1 cut(s)	1783
ErhI	CCWWGG	2 cut(s)	427, 1485
Esp3I	CGTCTC	1 cut(s)	1694
FaqI	GGGAC	4 cut(s)	876, 960, 1088, 1175
FauI	CCCGC	2 cut(s)	103, 188
FauNDI	CATATG	1 cut(s)	1166
FbaI	TGATCA	2 cut(s)	408, 819
FblI	GTMKAC	2 cut(s)	1945, 1961
Fnu4HI	GCNGC	8 cut(s)	99, 485, 633, 746, 987, 999, 1286, 1993
FokI	GGATG	8 cut(s)	137, 593, 622, 679, 1259, 1468, 1574, 1725
Fsp4HI	GCNGC	8 cut(s)	99, 485, 633, 746, 987, 999, 1286, 1993
FspBI	CTAG	7 cut(s)	1514, 1656, 1701, 1802, 2093, 2160, 2164
GlaI	GCGC	2 cut(s)	13, 753
GluI	GCNGC	8 cut(s)	99, 485, 633, 746, 987, 999, 1286, 1993
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	869, 1442
HaeII	RGCGCY	1 cut(s)	755
HapII	CCGG	6 cut(s)	227, 283, 311, 578, 678, 1427
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	2 cut(s)	14, 754
Hin6I	GCGC	2 cut(s)	12, 752
HinP1I	GCGC	2 cut(s)	12, 752
HincII	GTYRAC	1 cut(s)	1197
HindII	GTYRAC	1 cut(s)	1197
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	6 cut(s)	256, 355, 719, 967, 1768, 2156
HpaII	CCGG	6 cut(s)	227, 283, 311, 578, 678, 1427
HphI	GGTGA	4 cut(s)	99, 406, 749, 1487
Hpy166II	GTNNAC	7 cut(s)	1083, 1197, 1542, 1653, 1946, 1962, 2069
Hpy188I	TCNGA	9 cut(s)	118, 155, 223, 293, 328, 769, 1822, 1872, 1929
Hpy188III	TCNNGA	6 cut(s)	350, 352, 888, 1400, 1532, 1693
Hpy8I	GTNNAC	7 cut(s)	1083, 1197, 1542, 1653, 1946, 1962, 2069
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	85, 96, 772, 1690, 2002
HpyCH4III	ACNGT	7 cut(s)	274, 593, 867, 1009, 1185, 1222, 1762
HpyCH4IV	ACGT	4 cut(s)	104, 911, 1649, 1734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 641, 751, 995, 1834, 1843, 1998
HpySE526I	ACGT	4 cut(s)	104, 911, 1649, 1734
HspAI	GCGC	2 cut(s)	12, 752
Ksp22I	TGATCA	2 cut(s)	408, 819
Kzo9I	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
LmnI	GCTCC	5 cut(s)	529, 850, 995, 1006, 1423
Lsp1109I	GCAGC	4 cut(s)	471, 757, 1297, 2004
LweI	GCATC	9 cut(s)	600, 762, 1668, 1710, 1747, 1790, 1815, 2004, 2025
MabI	ACCWGGT	1 cut(s)	1674
MaeI	CTAG	7 cut(s)	1514, 1656, 1701, 1802, 2093, 2160, 2164
MaeII	ACGT	4 cut(s)	104, 911, 1649, 1734
MaeIII	GTNAC	9 cut(s)	105, 697, 802, 1060, 1225, 1475, 1645, 1750, 1855
MalI	GATC	7 cut(s)	410, 492, 683, 821, 1431, 1470, 1641
MbiI	CCGCTC	1 cut(s)	1001
MboI	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
MfeI	CAATTG	1 cut(s)	2002
MflI	RGATCY	1 cut(s)	1468
MluCI	AATT	6 cut(s)	1314, 1372, 1463, 1574, 2002, 2139
MmeI	TCCRAC	3 cut(s)	246, 588, 696
Mph1103I	ATGCAT	1 cut(s)	1783
MseI	TTAA	6 cut(s)	318, 1094, 1290, 1494, 2085, 2138
MslI	CAYNNNNRTG	1 cut(s)	1776
MspI	CCGG	6 cut(s)	227, 283, 311, 578, 678, 1427
MspR9I	CCNGG	9 cut(s)	227, 265, 679, 860, 1072, 1244, 1387, 1676, 1907
MunI	CAATTG	1 cut(s)	2002
Mva1269I	GAATGC	1 cut(s)	1177
MvaI	CCWGG	7 cut(s)	265, 860, 1072, 1244, 1387, 1676, 1907
MvnI	CGCG	3 cut(s)	132, 183, 243
MwoI	GCNNNNNNNGC	7 cut(s)	26, 641, 751, 995, 1834, 1843, 1998
NciI	CCSGG	2 cut(s)	227, 679
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	1166
NdeII	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
NheI	GCTAGC	1 cut(s)	1513
NlaIV	GGNNCC	2 cut(s)	997, 1425
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	3 cut(s)	105, 802, 1475
NsiI	ATGCAT	1 cut(s)	1783
NspI	RCATGY	2 cut(s)	1606, 2117
PaeI	GCATGC	1 cut(s)	2117
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	2 cut(s)	1399, 1692
PasI	CCCWGGG	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	1207
PciI	ACATGT	1 cut(s)	1602
PctI	GAATGC	1 cut(s)	1177
PfeI	GAWTC	6 cut(s)	256, 355, 719, 967, 1768, 2156
PflMI	CCANNNNNTGG	1 cut(s)	1077
PfoI	TCCNGGA	1 cut(s)	1242
PkrI	GCNGC	8 cut(s)	100, 486, 634, 747, 988, 1000, 1287, 1994
Ppu21I	YACGTR	1 cut(s)	912
PscI	ACATGT	1 cut(s)	1602
PsiI	TTATAA	2 cut(s)	1020, 1233
Psp6I	CCWGG	7 cut(s)	263, 858, 1070, 1242, 1385, 1674, 1905
PspEI	GGTNACC	1 cut(s)	1475
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	7 cut(s)	263, 858, 1070, 1242, 1385, 1674, 1905
PspN4I	GGNNCC	2 cut(s)	997, 1425
PstI	CTGCAG	1 cut(s)	1994
PstNI	CAGNNNCTG	2 cut(s)	865, 1077
PsuI	RGATCY	1 cut(s)	1468
RsaI	GTAC	8 cut(s)	39, 1127, 1620, 1652, 1764, 1814, 2027, 2068
RsaNI	GTAC	8 cut(s)	38, 1126, 1619, 1651, 1763, 1813, 2026, 2067
RseI	CAYNNNNRTG	1 cut(s)	1776
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SaqAI	TTAA	6 cut(s)	318, 1094, 1290, 1494, 2085, 2138
SatI	GCNGC	8 cut(s)	99, 485, 633, 746, 987, 999, 1286, 1993
Sau3AI	GATC	7 cut(s)	408, 490, 681, 819, 1429, 1468, 1639
ScaI	AGTACT	1 cut(s)	1764
ScrFI	CCNGG	9 cut(s)	227, 265, 679, 860, 1072, 1244, 1387, 1676, 1907
SexAI	ACCWGGT	1 cut(s)	1674
SfaNI	GCATC	9 cut(s)	600, 762, 1668, 1710, 1747, 1790, 1815, 2004, 2025
SfcI	CTRYAG	1 cut(s)	1990
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	4 cut(s)	189, 229, 324, 1903
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	1776
SmlI	CTYRAG	3 cut(s)	350, 1585, 2129
SmoI	CTYRAG	3 cut(s)	350, 1585, 2129
SphI	GCATGC	1 cut(s)	2117
Sse9I	AATT	6 cut(s)	1314, 1372, 1463, 1574, 2002, 2139
SseBI	AGGCCT	1 cut(s)	1207
SspMI	CTAG	7 cut(s)	1514, 1656, 1701, 1802, 2093, 2160, 2164
StuI	AGGCCT	1 cut(s)	1207
StyD4I	CCNGG	9 cut(s)	225, 263, 677, 858, 1070, 1242, 1385, 1674, 1905
StyI	CCWWGG	2 cut(s)	427, 1485
TaaI	ACNGT	7 cut(s)	274, 593, 867, 1009, 1185, 1222, 1762
TaiI	ACGT	4 cut(s)	107, 914, 1652, 1737
TaqI	TCGA	6 cut(s)	351, 549, 833, 1025, 1272, 1450
TasI	AATT	6 cut(s)	1314, 1372, 1463, 1574, 2002, 2139
TatI	WGTACW	4 cut(s)	1762, 1812, 2025, 2066
TauI	GCSGC	4 cut(s)	101, 635, 989, 1001
TfiI	GAWTC	6 cut(s)	256, 355, 719, 967, 1768, 2156
Tru1I	TTAA	6 cut(s)	318, 1094, 1290, 1494, 2085, 2138
Tru9I	TTAA	6 cut(s)	318, 1094, 1290, 1494, 2085, 2138
TscAI	CASTG	2 cut(s)	418, 2080
TseFI	GTSAC	3 cut(s)	105, 802, 1475
TseI	GCWGC	4 cut(s)	484, 745, 1285, 1992
Tsp45I	GTSAC	3 cut(s)	105, 802, 1475
TspDTI	ATGAA	5 cut(s)	1388, 1655, 1709, 1760, 2111
TspGWI	ACGGA	3 cut(s)	466, 1216, 1431
TspRI	CASTG	2 cut(s)	418, 2080
Van91I	CCANNNNNTGG	1 cut(s)	1077
VpaK11BI	GGWCC	4 cut(s)	189, 229, 324, 1903
XapI	RAATTY	2 cut(s)	1314, 1372
XceI	RCATGY	2 cut(s)	1606, 2117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	1945, 1961
XspI	CTAG	7 cut(s)	1514, 1656, 1701, 1802, 2093, 2160, 2164
ZrmI	AGTACT	1 cut(s)	1764
Zsp2I	ATGCAT	1 cut(s)	1783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.