Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004762

Physical Location & Seq

Genomic Coordinates Reverse (-)

56950743 .. 56960993

Gene Structure 10251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCTCTGGTGTGTTCCTAAGACACGCGTCCTCCACCGATCAGGATTGCTGATCAGAAGTAAAACAGTAAAAATGACTTCGCCTTTGTTGCACAACCGAAACCAAGTAATGGCGCCAAAAAAGGCAACCAGAGATGAAAGTCCTCCACCGTCCGATCCTCACGGAATCTTCGCCGGAATGGTCGTCTTCTTAGTCGAAGACGGAGTTCAGAACCGTCGCTTACAGGTTTGGAAGCAAAAACTGGTTCAAATGGGAGCTACTATAGAAGACCATCTATCCAAAAGGGTCACACACATATTTGCTATGAACCCAGAAGCCCTTTTGCAAAAAGTGGGCAGTGATCAACGGGGTCTCTTTAAAGGAAGAGTTGTACTCTATCAGTGGCTAGAGGACAGCTTGAGCTCAGGGAAGAGAGTACCAGAAGATTTGTACCATCTGAAATTGGAGTCAGATAAGTCTTCTAGTGATTACATTTCCAGTGATGAAGAAACCCCAAAACTGAAAAGGCGAAGATCCTCATCTCCTGATGAGTTGCCTCATACTCCCAGCCCCAAAACCCCTAAAGCCCCAAATAAGGATCAGGTCACAGCATTGCAGTCATCCACGCCCTACAACCCACCTGATTTAAACAAAGACATAACCCAGATATTTGGGAAGCTTATCAACATATATAGAGCATTGGGCGATGACCGAAGATCTTTTAGCTACTACAAGGCTATAACAGTTATTGAGAAGTTGCCTTTCAAGATTCAAAGTGCAGAACAAGTTAAGGGCCTCCCGGGCATTGGAAAGTCAATGCAAGATCATGCTCAAGAGATGGAACTTCTTCTACAAAAAGCGGCAGAGGATGTTTTGCCTGGGTGGGCTGGAGGGACGCAAGGCAGGTGGGCTTGTGATTCGATATGCTGGAGCTGCGCTTCGATATGCTGCTGTGGGTTTTGGAGGGACAGTGAAATCGGATTGGTGGCGGCGGCCGGCGGGAAGATAAGACTGGGTACTGATTCTGGTGTCGACACATATTATGGGCTTTGTACATATCCTGGACGAGAGCTGCGGCACCGCATAGATTTCAAGGTCTACCCACGGGACATATATGCATTTGGACTAATAGCTTGGACAGGGAATGATGTGCTGAATAGGAGGTTGAGGTTACTAGCTGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTGTTTCCGGCCACTCATGGATCTGGCGGAAGACGGGGGGCAAAAGCTGGCGCAAGCTTGAAATTTGACACAGAAAAGGAGGTCTTTGACTTTCTCGGGTTTCCTTGGCTTGAACCACACGAGAGAAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

441

Amino Acids

49.47

Weight (kDa)

9.2

Isoelectric Point (pI)

57.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_8	PF14716	210 - 272	6.3e-12	Helix-hairpin-helix domain
DNA_pol_B_thumb	PF14791	369 - 440	6.6e-20	DNA polymerase beta thumb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10520 AT1G10520
fragaria_vesca	FvH4_4g35010 FvH4_4g35030
malus_domestica	MD16G1086600.v1.1 MD16G1086700.v1.1
prunus_persica	Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1
pyrus_communis	pycom16g07470
rosa_chinensis	RchiOBHm_Chr4g0444541 RchiOBHm_Chr4g0444551
rosa_laevigata	RLG00000005822 RLG00000005825
rosa_multiflora	Rmu_sc0003839.1_g000005 Rmu_sc0012648.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385000 Rroxscaffold_5G00385010
rosa_rugosa	Rorug04G0353500 Rorug04G0353600 Rorug04G0353700 Rorug04G0353800
rosa_samantha	Rh4AG413800 Rh4BG425500 Rh4CG439900 Rh4CG440200 Rh4DG420800 Rh4DG421100
rosa_wichuraiana	Rw4G035540 Rw4G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	873
Acc36I	ACCTGC	1 cut(s)	873
AccB1I	GGYRCC	2 cut(s)	112, 1056
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	2 cut(s)	1011, 1077
AccII	CGCG	1 cut(s)	27
AciI	CCGC	7 cut(s)	839, 968, 971, 978, 1054, 1060, 1218
AclWI	GGATC	4 cut(s)	149, 507, 585, 1219
AcoI	YGGCCR	2 cut(s)	972, 1200
AcsI	RAATTY	1 cut(s)	1253
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	5 cut(s)	372, 417, 431, 997, 1033
AfiI	CCNNNNNNNGG	3 cut(s)	109, 574, 785
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	6 cut(s)	248, 745, 752, 1072, 1252, 1304
AjnI	CCWGG	2 cut(s)	856, 1039
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	4 cut(s)	149, 507, 585, 1219
Ama87I	CYCGRG	2 cut(s)	778, 1286
AoxI	GGCC	3 cut(s)	772, 972, 1200
ApeKI	GCWGC	3 cut(s)	912, 927, 1051
ApoI	RAATTY	1 cut(s)	1253
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	3 cut(s)	115, 917, 1244
AspS9I	GGNCC	1 cut(s)	772
AsuC2I	CCSGG	2 cut(s)	779, 780
AvaI	CYCGRG	2 cut(s)	778, 1286
BanI	GGYRCC	2 cut(s)	112, 1056
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	1310
BbsI	GAAGAC	5 cut(s)	178, 204, 273, 450, 1228
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	3 cut(s)	899, 914, 1038
BccI	CCATC	3 cut(s)	279, 441, 811
BciT130I	CCWGG	2 cut(s)	858, 1041
BclI	TGATCA	2 cut(s)	51, 340
BcnI	CCSGG	2 cut(s)	779, 780
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	3 cut(s)	386, 462, 1154
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	873
BglI	GCCNNNNNGGC	1 cut(s)	780
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	7 cut(s)	840, 913, 928, 969, 972, 1052, 1055
BlsI	GCNGC	7 cut(s)	841, 914, 929, 970, 973, 1053, 1056
Bme1390I	CCNGG	4 cut(s)	779, 780, 858, 1041
BmeT110I	CYCGRG	2 cut(s)	778, 1286
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	2 cut(s)	114, 1058
BmrFI	CCNGG	4 cut(s)	779, 780, 858, 1041
BmrI	ACTGGG	1 cut(s)	1001
BmuI	ACTGGG	1 cut(s)	1001
BoxI	GACNNNNGTC	1 cut(s)	26
BpiI	GAAGAC	5 cut(s)	178, 204, 273, 450, 1228
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	2 cut(s)	888, 928
Bpu10I	CCTNAGC	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	418, 795
BpuMI	CCSGG	2 cut(s)	779, 780
BsaBI	GATNNNNATC	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	778, 857, 1082, 1295
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 934, 964
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 574, 785
Bse118I	RCCGGY	1 cut(s)	974
Bse1I	ACTGG	3 cut(s)	246, 477, 996
Bse3DI	GCAATG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	858, 1041
BseDI	CCNNGG	4 cut(s)	778, 857, 1082, 1295
BseGI	GGATG	2 cut(s)	599, 853
BseJI	GATNNNNATC	1 cut(s)	517
BseLI	CCNNNNNNNGG	3 cut(s)	109, 574, 785
BseMI	GCAATG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	246, 477, 996
BseX3I	CGGCCG	1 cut(s)	972
BseXI	GCAGC	3 cut(s)	899, 914, 1038
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	975
BshFI	GGCC	3 cut(s)	774, 974, 1202
BshNI	GGYRCC	2 cut(s)	112, 1056
BsiEI	CGRYCG	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	2 cut(s)	778, 1286
BsiSI	CCGG	5 cut(s)	174, 779, 975, 1174, 1199
BslFI	GGGAC	3 cut(s)	886, 959, 1100
BslI	CCNNNNNNNGG	3 cut(s)	109, 574, 785
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	3 cut(s)	886, 959, 1100
BsnI	GGCC	3 cut(s)	774, 974, 1202
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	2 cut(s)	778, 1286
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	1031
Bsp143I	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
BspACI	CCGC	7 cut(s)	839, 968, 971, 978, 1054, 1060, 1218
BspANI	GGCC	3 cut(s)	774, 974, 1202
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	114, 1058
BspMI	ACCTGC	1 cut(s)	873
BspPI	GGATC	4 cut(s)	149, 507, 585, 1219
BspT107I	GGYRCC	2 cut(s)	112, 1056
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	974
BsrGI	TGTACA	1 cut(s)	1031
BsrI	ACTGG	3 cut(s)	246, 477, 996
BssAI	RCCGGY	1 cut(s)	974
BssECI	CCNNGG	4 cut(s)	778, 857, 1082, 1295
BssMI	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	1310
BssT1I	CCWWGG	1 cut(s)	1295
Bst2BI	CACGAG	1 cut(s)	1310
Bst2UI	CCWGG	2 cut(s)	858, 1041
Bst4CI	ACNGT	5 cut(s)	67, 150, 215, 724, 950
Bst6I	CTCTTC	2 cut(s)	358, 404
BstACI	GRCGYC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	1031
BstC8I	GCNNGC	3 cut(s)	976, 1240, 1246
BstDEI	CTNAG	3 cut(s)	18, 190, 403
BstDSI	CCRYGG	1 cut(s)	1082
BstF5I	GGATG	2 cut(s)	599, 853
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	115, 917, 1244
BstKTI	GATC	9 cut(s)	41, 54, 157, 343, 515, 580, 698, 805, 1214
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
BstMCI	CGRYCG	1 cut(s)	975
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 780, 912
BstNI	CCWGG	2 cut(s)	858, 1041
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	4 cut(s)	777, 778, 856, 1039
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	899, 914, 1038
BstV2I	GAAGAC	5 cut(s)	178, 204, 273, 450, 1228
BstX2I	RGATCY	3 cut(s)	512, 695, 1211
BstXI	CCANNNNNNTGG	1 cut(s)	650
BstYI	RGATCY	3 cut(s)	512, 695, 1211
BstZI	CGGCCG	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	774, 974, 1202
BtgI	CCRYGG	1 cut(s)	1082
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	599, 853
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	4 cut(s)	343, 386, 484, 955
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	976, 1240, 1246
CfoI	GCGC	3 cut(s)	115, 917, 1244
Cfr10I	RCCGGY	1 cut(s)	974
Cfr13I	GGNCC	1 cut(s)	772
Cfr9I	CCCGGG	1 cut(s)	778
CseI	GACGC	2 cut(s)	16, 883
Csp6I	GTAC	5 cut(s)	371, 416, 430, 996, 1032
CspCI	CAANNNNNGTGG	2 cut(s)	866, 901
CviAII	CATG	2 cut(s)	806, 1208
CviQI	GTAC	5 cut(s)	371, 416, 430, 996, 1032
DdeI	CTNAG	3 cut(s)	18, 190, 403
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	9 cut(s)	40, 53, 156, 342, 514, 579, 697, 804, 1213
DpnII	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
DraI	TTTAAA	2 cut(s)	358, 627
EaeI	YGGCCR	2 cut(s)	972, 1200
EagI	CGGCCG	1 cut(s)	972
Eam1104I	CTCTTC	2 cut(s)	358, 404
EarI	CTCTTC	2 cut(s)	358, 404
EciI	GGCGGA	1 cut(s)	1233
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	972
Eco130I	CCWWGG	1 cut(s)	1295
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	972
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	2 cut(s)	778, 1286
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	856, 1039
EcoT14I	CCWWGG	1 cut(s)	1295
EcoT22I	ATGCAT	1 cut(s)	1099
EcoT38I	GRGCYC	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	1295
FaeI	CATG	2 cut(s)	809, 1211
FalI	AAGNNNNNCTT	2 cut(s)	1259, 1291
FaqI	GGGAC	3 cut(s)	886, 959, 1100
FatI	CATG	2 cut(s)	805, 1207
FauI	CCCGC	1 cut(s)	971
FbaI	TGATCA	2 cut(s)	51, 340
FblI	GTMKAC	2 cut(s)	1011, 1077
Fnu4HI	GCNGC	7 cut(s)	840, 913, 928, 969, 972, 1052, 1055
FokI	GGATG	2 cut(s)	586, 860
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	7 cut(s)	840, 913, 928, 969, 972, 1052, 1055
FspBI	CTAG	3 cut(s)	386, 462, 1154
GlaI	GCGC	3 cut(s)	114, 916, 1243
GluI	GCNGC	7 cut(s)	840, 913, 928, 969, 972, 1052, 1055
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	888, 928
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	774, 974, 1202
HapII	CCGG	5 cut(s)	174, 779, 975, 1174, 1199
HgaI	GACGC	2 cut(s)	16, 883
HhaI	GCGC	3 cut(s)	115, 917, 1244
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	809, 1211
Hin6I	GCGC	3 cut(s)	113, 915, 1242
HinP1I	GCGC	3 cut(s)	113, 915, 1242
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HindIII	AAGCTT	2 cut(s)	656, 1246
HinfI	GANTC	7 cut(s)	165, 446, 748, 896, 1001, 1160, 1170
HpaII	CCGG	5 cut(s)	174, 779, 975, 1174, 1199
Hpy166II	GTNNAC	2 cut(s)	1012, 1078
Hpy188I	TCNGA	6 cut(s)	56, 154, 210, 438, 451, 959
Hpy188III	TCNNGA	4 cut(s)	42, 524, 745, 812
Hpy8I	GTNNAC	2 cut(s)	1012, 1078
Hpy99I	CGWCG	1 cut(s)	219
HpyCH4III	ACNGT	5 cut(s)	67, 150, 215, 724, 950
HpyCH4V	TGCA	6 cut(s)	91, 325, 595, 758, 799, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 780, 912
HpyF3I	CTNAG	3 cut(s)	18, 190, 403
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	809, 1211
HspAI	GCGC	3 cut(s)	113, 915, 1242
KasI	GGCGCC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	974
KroNI	GCCGGC	1 cut(s)	976
Ksp22I	TGATCA	2 cut(s)	51, 340
Kzo9I	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
LmnI	GCTCC	2 cut(s)	254, 909
Lsp1109I	GCAGC	3 cut(s)	899, 914, 1038
MaeI	CTAG	3 cut(s)	386, 462, 1154
MaeIII	GTNAC	3 cut(s)	286, 583, 1149
MalI	GATC	9 cut(s)	40, 53, 156, 342, 514, 579, 697, 804, 1213
MboI	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
MflI	RGATCY	3 cut(s)	512, 695, 1211
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	2 cut(s)	440, 1253
MluI	ACGCGT	1 cut(s)	25
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	455
Mph1103I	ATGCAT	1 cut(s)	1099
MroNI	GCCGGC	1 cut(s)	974
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	3 cut(s)	357, 626, 768
MspI	CCGG	5 cut(s)	174, 779, 975, 1174, 1199
MspR9I	CCNGG	4 cut(s)	779, 780, 858, 1041
MvaI	CCWGG	2 cut(s)	858, 1041
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	88, 780, 912
NaeI	GCCGGC	1 cut(s)	976
NarI	GGCGCC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	779, 780
NdeII	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
NgoMIV	GCCGGC	1 cut(s)	974
NlaIII	CATG	2 cut(s)	809, 1211
NlaIV	GGNNCC	2 cut(s)	114, 1058
NmuCI	GTSAC	2 cut(s)	286, 583
NsiI	ATGCAT	1 cut(s)	1099
PaqCI	CACCTGC	1 cut(s)	873
PdiI	GCCGGC	1 cut(s)	976
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	6 cut(s)	165, 748, 896, 1001, 1160, 1170
PflMI	CCANNNNNTGG	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	1039
PkrI	GCNGC	7 cut(s)	841, 914, 929, 970, 973, 1053, 1056
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	454
PshAI	GACNNNNGTC	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	856, 1039
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	856, 1039
PspN4I	GGNNCC	2 cut(s)	114, 1058
PspPI	GGNCC	1 cut(s)	772
PsrI	GAACNNNNNNTAC	2 cut(s)	813, 845
PsuI	RGATCY	3 cut(s)	512, 695, 1211
RsaI	GTAC	5 cut(s)	372, 417, 431, 997, 1033
RsaNI	GTAC	5 cut(s)	371, 416, 430, 996, 1032
SacI	GAGCTC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	1010
SaqAI	TTAA	3 cut(s)	357, 626, 768
SatI	GCNGC	7 cut(s)	840, 913, 928, 969, 972, 1052, 1055
Sau3AI	GATC	9 cut(s)	38, 51, 154, 340, 512, 577, 695, 802, 1211
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	4 cut(s)	779, 780, 858, 1041
SduI	GDGCHC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	780
SmlI	CTYRAG	2 cut(s)	397, 810
SmoI	CTYRAG	2 cut(s)	397, 810
Sse9I	AATT	2 cut(s)	440, 1253
SsiI	CCGC	7 cut(s)	839, 968, 971, 978, 1054, 1060, 1218
SspDI	GGCGCC	1 cut(s)	112
SspMI	CTAG	3 cut(s)	386, 462, 1154
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	4 cut(s)	777, 778, 856, 1039
StyI	CCWWGG	1 cut(s)	1295
TaaI	ACNGT	5 cut(s)	67, 150, 215, 724, 950
TaqI	TCGA	4 cut(s)	195, 899, 920, 1011
TaqII	GACCGA	1 cut(s)	705
TasI	AATT	2 cut(s)	440, 1253
TatI	WGTACW	2 cut(s)	370, 1031
TauI	GCSGC	4 cut(s)	842, 971, 974, 1057
TfiI	GAWTC	6 cut(s)	165, 748, 896, 1001, 1160, 1170
Tru1I	TTAA	3 cut(s)	357, 626, 768
Tru9I	TTAA	3 cut(s)	357, 626, 768
TscAI	CASTG	4 cut(s)	343, 386, 484, 955
TseFI	GTSAC	2 cut(s)	286, 583
TseI	GCWGC	3 cut(s)	912, 927, 1051
Tsp45I	GTSAC	2 cut(s)	286, 583
TspDTI	ATGAA	3 cut(s)	150, 320, 498
TspGWI	ACGGA	2 cut(s)	177, 216
TspMI	CCCGGG	1 cut(s)	778
TspRI	CASTG	4 cut(s)	343, 386, 484, 955
Van91I	CCANNNNNTGG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	1253
XmaI	CCCGGG	1 cut(s)	778
XmiI	GTMKAC	2 cut(s)	1011, 1077
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	3 cut(s)	386, 462, 1154
Zsp2I	ATGCAT	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.