Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004762

Physical Location & Seq

Genomic Coordinates Reverse (-)

67715240 .. 67719374

Gene Structure 4135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCGCCAAAAAAGGCAACCAGAGATGAAAGTCCTCCACCGTCCGATCCTCACGGAATCTTCGCCGGAATGGTCGTCTTCTTAGTCGAAGACGGAGTTCAGAACCGTCGCTTACAGGTTTGGAAGCAAAAACTGGTTCAAATGGGAGCTACTATAGAAGACCATCTATCCAAAAGGGTCACACACATATTTGCTATGAACCCAGAAGCCCTTTTGCAAAAAGTGGGCAGTGATCAACGGGGTCTCTTTAAAGGAAGAGTTGTACTCTATCAGTGGCTAGAGGACAGCTTGAGCTCAGGGAAGAGAGTACCAGAAGATTTGTACCTTCTGAAATTGGAGTCAGATAAGTCTTCTAGTGATTACATTTCCAGTGATGAAGAAACCCCAAAACTGAAAAGGCGAAGATCCTCATCTCCTGATGAGTTGCCTCATACTCCCAGCCCCAAAACCCCTAAAGCCCCAAATAAGGATCAGGTCACAGCATTGCAGTCATCCACGCCCTACAACCCACCTGATTTAAACAAAGACATAACCCAGATATTTGGGAAGCTTATCAACATATATAGAGCATTGGGCGATGACCGAAGATCTTTTAGCTACTACAAGGCTATAACAGTTATTGAGAAGTTGCCTTTCAAGATTCAAAGTGCAGAACAAGTTAAGGGCCTCCCGGGCATTGGAAAGTCAATGCAAGATCATGTAAAAACAATCAGCTTATTCGAGGAAATATGGGGTGTAGGTCCAGCTACTGCACTAAAATTATTTGAGAAAGGACATCACACATTAGATGATTTGAAGAATGAAGATTCGTTGACACATTCACAGAAGTTGGGGTTAAGATATTATGAGGATATCAAACAGAGGATCCCACGGCATGAGGCTCAAGAGATGGAACTTCTTCTACAAAAAGCGGCAGAGGATGTTTTGCCTGGGGTGGTTGTTGTATGTGGAGGGTCATATAGACGCGGGAAATCTTCTTGTGGGGATCTGGACATTGTAATTACTCATCCAGATGAGAACAGTCATAAAGGTTTTTTACTGAAGTATGTAAAGCATCTAAAGGATATGAAGTTCCTAAGGGAGGATTTGGTTTTCGTTACACACAGCGAGGAGGGTACTGATTCTGGTGTCGACACATATTATGGGCTTTGTACATATCCTGGACGAGAGCTGCGGCACCGCATAGATTTTAAGGTCTACCCACGGGACATATATGCATTTGGACTAATAGCTTGGACAGGGAATGATGTGCTGAATAGGAGGTTGAGGTTACTAGCTGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTGTTTCCGGCCACTCATGGATCTGGCGGAAGACGGGGGGCAAAAGCTGGCGCAAGCTTGAAATTTGACACAGAAAAGGAGGTCTTTGACTTTCTCCGGTTTCCTTGGCTTGAACCACACGAGAGAAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

481

Amino Acids

54.5

Weight (kDa)

8.61

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_8	PF14716	174 - 236	1e-11	Helix-hairpin-helix domain
DNA_pol_lambd_f	PF10391	239 - 285	7.6e-19	Fingers domain of DNA polymerase lambda
DNA_pol_B_palm	PF14792	288 - 402	1.8e-29	DNA polymerase beta palm
DNA_pol_B_thumb	PF14791	409 - 480	1.1e-18	DNA polymerase beta thumb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10520 AT1G10520
fragaria_vesca	FvH4_4g35010 FvH4_4g35030
malus_domestica	MD16G1086600.v1.1 MD16G1086700.v1.1
prunus_persica	Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1
pyrus_communis	pycom16g07470
rosa_chinensis	RchiOBHm_Chr4g0444541 RchiOBHm_Chr4g0444551
rosa_laevigata	RLG00000005822 RLG00000005825
rosa_multiflora	Rmu_sc0003839.1_g000005 Rmu_sc0012648.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385000 Rroxscaffold_5G00385010
rosa_rugosa	Rorug04G0353500 Rorug04G0353600 Rorug04G0353700 Rorug04G0353800
rosa_samantha	Rh4AG413800 Rh4BG425500 Rh4CG439900 Rh4CG440200 Rh4DG420800 Rh4DG421100
rosa_wichuraiana	Rw4G035540 Rw4G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 1176
AccI	GTMKAC	2 cut(s)	1131, 1197
AccII	CGCG	1 cut(s)	966
AciI	CCGC	5 cut(s)	911, 966, 1174, 1180, 1338
AclWI	GGATC	7 cut(s)	41, 399, 477, 859, 872, 993, 1339
AcoI	YGGCCR	1 cut(s)	1320
AcsI	RAATTY	1 cut(s)	1373
AcuI	CTGAAG	1 cut(s)	1061
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	264, 309, 323, 1117, 1153
AfiI	CCNNNNNNNGG	3 cut(s)	466, 677, 1081
AgsI	TTSAA	6 cut(s)	140, 637, 644, 796, 1372, 1424
AjnI	CCWGG	2 cut(s)	928, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	1055, 1087
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	7 cut(s)	41, 399, 477, 859, 872, 993, 1339
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	670
AoxI	GGCC	2 cut(s)	664, 1320
ApeKI	GCWGC	1 cut(s)	1171
ApoI	RAATTY	1 cut(s)	1373
Asp700I	GAANNNNTTC	1 cut(s)	897
AspLEI	GCGC	2 cut(s)	7, 1364
AspS9I	GGNCC	2 cut(s)	664, 740
AsuC2I	CCSGG	2 cut(s)	671, 672
AvaI	CYCGRG	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	1076
BamHI	GGATCC	1 cut(s)	864
BanI	GGYRCC	2 cut(s)	4, 1176
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	1430
BbsI	GAAGAC	5 cut(s)	70, 96, 165, 342, 1348
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	1158
BccI	CCATC	2 cut(s)	171, 883
BceAI	ACGGC	1 cut(s)	887
BciT130I	CCWGG	2 cut(s)	930, 1161
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	671, 672
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	3 cut(s)	278, 354, 1274
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	672
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	912, 1172, 1175
BlsI	GCNGC	3 cut(s)	913, 1173, 1176
Bme1390I	CCNGG	4 cut(s)	671, 672, 930, 1161
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	664, 740
BmiI	GGNNCC	3 cut(s)	6, 866, 1178
BmrFI	CCNGG	4 cut(s)	671, 672, 930, 1161
BmsI	GCATC	1 cut(s)	1063
BpiI	GAAGAC	5 cut(s)	70, 96, 165, 342, 1348
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	310, 867
BpuMI	CCSGG	2 cut(s)	671, 672
BsaBI	GATNNNNATC	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	670, 869, 929, 1202, 1415
BsaWI	WCCGGW	1 cut(s)	1407
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 677, 1081
Bse1I	ACTGG	2 cut(s)	138, 369
Bse21I	CCTNAGG	1 cut(s)	1076
Bse3DI	GCAATG	1 cut(s)	482
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	930, 1161
BseDI	CCNNGG	5 cut(s)	670, 869, 929, 1202, 1415
BseGI	GGATG	3 cut(s)	491, 925, 1006
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	3 cut(s)	466, 677, 1081
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	138, 369
BseRI	GAGGAG	1 cut(s)	1124
BseXI	GCAGC	1 cut(s)	1158
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	2 cut(s)	669, 735
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	2 cut(s)	666, 1322
BshNI	GGYRCC	2 cut(s)	4, 1176
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	670
BsiSI	CCGG	5 cut(s)	66, 671, 1294, 1319, 1408
BslFI	GGGAC	1 cut(s)	1220
BslI	CCNNNNNNNGG	3 cut(s)	466, 677, 1081
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	1220
BsnI	GGCC	2 cut(s)	666, 1322
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	1151
Bsp143I	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
BspACI	CCGC	5 cut(s)	911, 966, 1174, 1180, 1338
BspANI	GGCC	2 cut(s)	666, 1322
BspCNI	CTCAG	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	966
BspLI	GGNNCC	3 cut(s)	6, 866, 1178
BspPI	GGATC	7 cut(s)	41, 399, 477, 859, 872, 993, 1339
BspT107I	GGYRCC	2 cut(s)	4, 1176
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	1151
BsrI	ACTGG	2 cut(s)	138, 369
BssECI	CCNNGG	5 cut(s)	670, 869, 929, 1202, 1415
BssMI	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	1430
BssT1I	CCWWGG	1 cut(s)	1415
Bst2BI	CACGAG	1 cut(s)	1430
Bst2UI	CCWGG	2 cut(s)	930, 1161
Bst4CI	ACNGT	4 cut(s)	42, 107, 616, 1022
Bst6I	CTCTTC	2 cut(s)	250, 296
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	1151
BstC8I	GCNNGC	2 cut(s)	1360, 1366
BstDEI	CTNAG	3 cut(s)	82, 295, 1076
BstDSI	CCRYGG	2 cut(s)	869, 1202
BstENI	CCTNNNNNAGG	1 cut(s)	1079
BstF5I	GGATG	3 cut(s)	491, 925, 1006
BstFNI	CGCG	1 cut(s)	966
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 1364
BstKTI	GATC	9 cut(s)	49, 235, 407, 472, 590, 697, 867, 988, 1334
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
BstMWI	GCNNNNNNNGC	1 cut(s)	672
BstNI	CCWGG	2 cut(s)	930, 1161
BstSCI	CCNGG	4 cut(s)	669, 670, 928, 1159
BstSFI	CTRYAG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	1 cut(s)	1158
BstV2I	GAAGAC	5 cut(s)	70, 96, 165, 342, 1348
BstX2I	RGATCY	5 cut(s)	404, 587, 864, 985, 1331
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	5 cut(s)	404, 587, 864, 985, 1331
Bsu36I	CCTNAGG	1 cut(s)	1076
BsuRI	GGCC	2 cut(s)	666, 1322
BtgI	CCRYGG	2 cut(s)	869, 1202
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	491, 925, 1006
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	3 cut(s)	235, 278, 376
Cac8I	GCNNGC	2 cut(s)	1360, 1366
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	2 cut(s)	7, 1364
Cfr13I	GGNCC	2 cut(s)	664, 740
Cfr9I	CCCGGG	1 cut(s)	670
CseI	GACGC	1 cut(s)	972
Csp6I	GTAC	5 cut(s)	263, 308, 322, 1116, 1152
CviAII	CATG	3 cut(s)	698, 875, 1328
CviQI	GTAC	5 cut(s)	263, 308, 322, 1116, 1152
DdeI	CTNAG	3 cut(s)	82, 295, 1076
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	9 cut(s)	48, 234, 406, 471, 589, 696, 866, 987, 1333
DpnII	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
DraI	TTTAAA	2 cut(s)	250, 519
EaeI	YGGCCR	1 cut(s)	1320
Eam1104I	CTCTTC	2 cut(s)	250, 296
EarI	CTCTTC	2 cut(s)	250, 296
EciI	GGCGGA	1 cut(s)	1353
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	1415
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	853
Eco47I	GGWCC	1 cut(s)	740
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	1061
Eco81I	CCTNAGG	1 cut(s)	1076
Eco88I	CYCGRG	1 cut(s)	670
EcoICRI	GAGCTC	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	1079
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	928, 1159
EcoRV	GATATC	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	1415
EcoT22I	ATGCAT	1 cut(s)	1219
EcoT38I	GRGCYC	1 cut(s)	296
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	1415
FaeI	CATG	3 cut(s)	701, 878, 1331
FalI	AAGNNNNNCTT	2 cut(s)	1379, 1411
FaqI	GGGAC	1 cut(s)	1220
FatI	CATG	3 cut(s)	697, 874, 1327
FauI	CCCGC	1 cut(s)	959
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	1131, 1197
Fnu4HI	GCNGC	3 cut(s)	912, 1172, 1175
FokI	GGATG	3 cut(s)	478, 932, 993
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	3 cut(s)	912, 1172, 1175
FspBI	CTAG	3 cut(s)	278, 354, 1274
GlaI	GCGC	2 cut(s)	6, 1363
GluI	GCNGC	3 cut(s)	912, 1172, 1175
GsaI	CCCAGC	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	666, 1322
HapII	CCGG	5 cut(s)	66, 671, 1294, 1319, 1408
HgaI	GACGC	1 cut(s)	972
HhaI	GCGC	2 cut(s)	7, 1364
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	701, 878, 1331
Hin6I	GCGC	2 cut(s)	5, 1362
HinP1I	GCGC	2 cut(s)	5, 1362
HincII	GTYRAC	2 cut(s)	813, 1132
HindII	GTYRAC	2 cut(s)	813, 1132
HindIII	AAGCTT	2 cut(s)	548, 1366
HinfI	GANTC	7 cut(s)	57, 338, 640, 806, 1121, 1280, 1290
HpaII	CCGG	5 cut(s)	66, 671, 1294, 1319, 1408
Hpy166II	GTNNAC	3 cut(s)	813, 1132, 1198
Hpy188I	TCNGA	4 cut(s)	46, 102, 330, 343
Hpy188III	TCNNGA	5 cut(s)	416, 637, 884, 989, 1010
Hpy8I	GTNNAC	3 cut(s)	813, 1132, 1198
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	42, 107, 616, 1022
HpyCH4V	TGCA	6 cut(s)	217, 487, 650, 691, 752, 1217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	672
HpyF3I	CTNAG	3 cut(s)	82, 295, 1076
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	701, 878, 1331
HspAI	GCGC	2 cut(s)	5, 1362
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	1158
LweI	GCATC	1 cut(s)	1063
MaeI	CTAG	3 cut(s)	278, 354, 1274
MaeIII	GTNAC	4 cut(s)	178, 475, 1096, 1269
MalI	GATC	9 cut(s)	48, 234, 406, 471, 589, 696, 866, 987, 1333
MboI	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
MflI	RGATCY	5 cut(s)	404, 587, 864, 985, 1331
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	4 cut(s)	332, 758, 999, 1373
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	1219
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	5 cut(s)	249, 518, 660, 836, 1191
MslI	CAYNNNNRTG	1 cut(s)	1011
MspI	CCGG	5 cut(s)	66, 671, 1294, 1319, 1408
MspR9I	CCNGG	4 cut(s)	671, 672, 930, 1161
MvaI	CCWGG	2 cut(s)	930, 1161
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	1 cut(s)	672
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	671, 672
NdeII	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
NlaIII	CATG	3 cut(s)	701, 878, 1331
NlaIV	GGNNCC	3 cut(s)	6, 866, 1178
NmuCI	GTSAC	2 cut(s)	178, 475
NsiI	ATGCAT	1 cut(s)	1219
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	6 cut(s)	57, 640, 806, 1121, 1280, 1290
PfoI	TCCNGGA	1 cut(s)	1159
PkrI	GCNGC	3 cut(s)	913, 1173, 1176
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	928, 1159
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	928, 1159
PspN4I	GGNNCC	3 cut(s)	6, 866, 1178
PspPI	GGNCC	2 cut(s)	664, 740
PsrI	GAACNNNNNNTAC	2 cut(s)	885, 917
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	5 cut(s)	404, 587, 864, 985, 1331
RsaI	GTAC	5 cut(s)	264, 309, 323, 1117, 1153
RsaNI	GTAC	5 cut(s)	263, 308, 322, 1116, 1152
RseI	CAYNNNNRTG	1 cut(s)	1011
SacI	GAGCTC	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	1130
SaqAI	TTAA	5 cut(s)	249, 518, 660, 836, 1191
SatI	GCNGC	3 cut(s)	912, 1172, 1175
Sau3AI	GATC	9 cut(s)	46, 232, 404, 469, 587, 694, 864, 985, 1331
Sau96I	GGNCC	2 cut(s)	664, 740
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	4 cut(s)	671, 672, 930, 1161
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	1063
SfcI	CTRYAG	1 cut(s)	153
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	740
SmaI	CCCGGG	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	1011
SmlI	CTYRAG	2 cut(s)	289, 882
SmoI	CTYRAG	2 cut(s)	289, 882
Sse9I	AATT	4 cut(s)	332, 758, 999, 1373
SsiI	CCGC	5 cut(s)	911, 966, 1174, 1180, 1338
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	278, 354, 1274
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	669, 670, 928, 1159
StyI	CCWWGG	1 cut(s)	1415
TaaI	ACNGT	4 cut(s)	42, 107, 616, 1022
TaqI	TCGA	3 cut(s)	87, 720, 1131
TaqII	GACCGA	1 cut(s)	597
TasI	AATT	4 cut(s)	332, 758, 999, 1373
TatI	WGTACW	2 cut(s)	262, 1151
TauI	GCSGC	2 cut(s)	914, 1177
TfiI	GAWTC	6 cut(s)	57, 640, 806, 1121, 1280, 1290
Tru1I	TTAA	5 cut(s)	249, 518, 660, 836, 1191
Tru9I	TTAA	5 cut(s)	249, 518, 660, 836, 1191
TscAI	CASTG	3 cut(s)	235, 278, 376
TseFI	GTSAC	2 cut(s)	178, 475
TseI	GCWGC	1 cut(s)	1171
Tsp45I	GTSAC	2 cut(s)	178, 475
TspDTI	ATGAA	5 cut(s)	42, 212, 390, 816, 1082
TspGWI	ACGGA	2 cut(s)	69, 108
TspMI	CCCGGG	1 cut(s)	670
TspRI	CASTG	3 cut(s)	235, 278, 376
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	1079
XapI	RAATTY	1 cut(s)	1373
XmaI	CCCGGG	1 cut(s)	670
XmiI	GTMKAC	2 cut(s)	1131, 1197
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	3 cut(s)	278, 354, 1274
Zsp2I	ATGCAT	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.