Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004762

Physical Location & Seq

Genomic Coordinates Reverse (-)

64182740 .. 64188572

Gene Structure 5833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGGCGCCAAGGGCTACCAGAAACCAAAGTCCACCGTGCGATCCTGACGGAATGTTCGCCGGCATGGTCGTCTTCTTAGTCCACAATGGAGTCCAGAACCGTCGATTACAGATTTGGAAGCAGAAATTGGTCCAAATGGGAGCCACTATAGAATTGCGAGTAACCAAAAACGTCACACACATATTGGCTATGAACCCAGAAGCTTTCTTGCGAGAAGTGGGCAGTGAGCGATTGGGTTTGTTTAAAGGAAGAGTTGTACTATATCAGTGGCTACAGGATAGCTTGAGCTCAGGTGAAAAGGTACCTGAAGAATTGTACCTTGTGAATTTGGATGCTGACAAGTCTTCCAGTGATTACAATTCCACTGAAAATGAAACCCCAAATCCCAAAAAGACTAAACTCTCTCCTGAGAATTCACCTCACACTCCAAGCCCTAAAACCCCCAAAGCTCTAAATGAGGATCAGGTCACACCATTGCAGTCATCCTCACCCTACAGCCCACCTGATTTGAACAGCAACATAACTCAGATATTTGGAAAGCTTATCAATATTTATAGAGCCTTGGGCGATGACCGGAGATCTTTTAGCTATTACAAGGCTATACCAGTTATAGAGAGGTTGCCGTTCAAGATACAGAGTCAGGACCAAGTTAAAGGCTTACCTAACATTGGAAAGTCAATGCAAGACCATATTCAGGAAATAGTGACTACCGGGAAGTTATCCAAGTTGGAGCATTTTGAAACAGATGAAAAGGTACGAACTATCAGCTTATTTGGGGAAGTTTGGGGCGTTGGTCCAGCTACTGCACAAAAATTGTATGAGAAAGGACACCGCACATTAGATGATCTGAAGAATGAAGAATCATTAACAAATTCACAGAAGTTAGGGTTAAAATATTTTGATGATATCAAACAGAGAATTCCACGCAATGAGGCTCAGGAGATGGAACATCTACTACAGAAAGCTGGAGAAGATGTTTTGCCTGGGGTGGACATTGTATGTGGAGGATCATATAGACGCGGGAAAGCTTCTTGTGGGGATCTGGACATTATAATTACACATCCTGATGGAAAAAGTCATAGAGGCTTTTTACCAAAATACGTAAAGCATTTAAAGGATATGAAGTTTCTAAGGGAGGATCTGGTTTTCAGTACACACAGTGAGGAGGGTACTGATTCTGGTGTCGACACATATTTTGGGCTTTGCACATTTCCTGGACGAGAGCTGCGCCACCGCATAGATATCAAGGTCTACCCACGGGAAATATATGCATGTGCGCTAATACATTGGACAGGCAATGATGTATTGAATAGGAGGTTGAGAGTTCTAGCCGAATCTAAAGGATTCCTACTTGATGATGATGGGCTATTTCCAGCTACACGGGGCTCTCTTGGTCAACGGGGCATGAGAGCAACTCCTCCAAAGCTTCACCAATCCTCTCCCTTCTATGCTTCTCCTTCTTCTTCTTACTCTTCACTCCCAACTGTTAAGGTTTCATCAAGCTTGTCTCATAGATTTAGTATTAAGTACCTTTCTTCAAAGAGACAGATATGCAGAGCAGCAGCCGAGTACAGATTTCCGGACCCAATTCCAGATTTTGCTGATGCTGAGACTGAGAAGTTCAGGACCCATCTCCTGAATAAGCTATCCAAGAAAGAGGTGTATGACGACTCTGTTGAAGAGGTCGTAGGGATCTGCACTGAGATATTTGGTACTTTCTTGCACACCGAGTATGGTGGTCCTGGGACGCTCTTGGTAGTTCCCTTCATTGATATGGCTGATACTCTAAACGAGCAGGGATTACCTGGAGGACCGCAAGCTGCGCGTGCTGCCATCAAATGGGCACAGAGACATGTTGACAAGGACTGGAAGGAATGGACTGGTGATGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

631

Amino Acids

70.96

Weight (kDa)

7.29

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_8	PF14716	171 - 240	8.6e-14	Helix-hairpin-helix domain
DNA_pol_lambd_f	PF10391	257 - 303	5.6e-20	Fingers domain of DNA polymerase lambda
DNA_pol_B_palm	PF14792	306 - 420	5.3e-30	DNA polymerase beta palm
DNA_pol_B_thumb	PF14791	426 - 461	7.6e-08	DNA polymerase beta thumb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10520 AT1G10520
fragaria_vesca	FvH4_4g35010 FvH4_4g35030
malus_domestica	MD16G1086600.v1.1 MD16G1086700.v1.1
prunus_persica	Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1 Prupe.1G259900_v2.0.a1
pyrus_communis	pycom16g07470
rosa_chinensis	RchiOBHm_Chr4g0444541 RchiOBHm_Chr4g0444551
rosa_laevigata	RLG00000005822 RLG00000005825
rosa_multiflora	Rmu_sc0003839.1_g000005 Rmu_sc0012648.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385000 Rroxscaffold_5G00385010
rosa_rugosa	Rorug04G0353500 Rorug04G0353600 Rorug04G0353700 Rorug04G0353800
rosa_samantha	Rh4AG413800 Rh4BG425500 Rh4CG439900 Rh4CG440200 Rh4DG420800 Rh4DG421100
rosa_wichuraiana	Rw4G035540 Rw4G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1052
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	2 cut(s)	4, 301
AccB7I	CCANNNNNTGG	1 cut(s)	1839
AccI	GTMKAC	2 cut(s)	1185, 1251
AccII	CGCG	2 cut(s)	1020, 1825
AccIII	TCCGGA	1 cut(s)	1579
AciI	CCGC	4 cut(s)	832, 1020, 1234, 1814
AclWI	GGATC	6 cut(s)	35, 468, 1015, 1047, 1146, 1700
AcsI	RAATTY	4 cut(s)	325, 412, 871, 918
AcuI	CTGAAG	2 cut(s)	327, 869
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	1160
AfaI	GTAC	9 cut(s)	258, 303, 317, 756, 1153, 1171, 1529, 1571, 1714
AfiI	CCNNNNNNNGG	3 cut(s)	668, 694, 1839
AflIII	ACRYGT	1 cut(s)	1852
AgsI	TTSAA	6 cut(s)	511, 628, 740, 1309, 1539, 1679
AjnI	CCWGG	4 cut(s)	982, 1213, 1741, 1804
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	4 cut(s)	1512, 1537, 1604, 1843
AlwI	GGATC	6 cut(s)	35, 468, 1015, 1047, 1146, 1700
AlwNI	CAGNNNCTG	1 cut(s)	803
Aor13HI	TCCGGA	1 cut(s)	1579
ApeKI	GCWGC	5 cut(s)	1225, 1559, 1562, 1820, 1829
ApoI	RAATTY	4 cut(s)	325, 412, 871, 918
ArsI	GACNNNNNNTTYG	4 cut(s)	38, 70, 1178, 1210
Asp718I	GGTACC	1 cut(s)	301
AspLEI	GCGC	4 cut(s)	7, 1230, 1279, 1825
AspS9I	GGNCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
AsuC2I	CCSGG	1 cut(s)	712
AsuHPI	GGTGA	5 cut(s)	305, 408, 480, 1421, 1895
AvaII	GGWCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
BaeGI	GKGCMC	1 cut(s)	1846
BanI	GGYRCC	2 cut(s)	4, 301
BanII	GRGCYC	2 cut(s)	290, 1388
BbsI	GAAGAC	2 cut(s)	64, 336
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	5 cut(s)	1212, 1571, 1574, 1807, 1816
BccI	CCATC	5 cut(s)	937, 1061, 1355, 1638, 1841
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	4 cut(s)	984, 1215, 1743, 1806
BcnI	CCSGG	1 cut(s)	712
BcoDI	GTCTC	4 cut(s)	1512, 1537, 1604, 1843
BfaI	CTAG	1 cut(s)	1328
BfmI	CTRYAG	4 cut(s)	147, 272, 493, 956
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	5 cut(s)	1226, 1560, 1563, 1821, 1830
BlsI	GCNGC	5 cut(s)	1227, 1561, 1564, 1822, 1831
Bme1390I	CCNGG	5 cut(s)	712, 984, 1215, 1743, 1806
Bme18I	GGWCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
BmgT120I	GGNCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
BmiI	GGNNCC	5 cut(s)	6, 142, 303, 1584, 1628
BmrFI	CCNGG	5 cut(s)	712, 984, 1215, 1743, 1806
BmsI	GCATC	2 cut(s)	322, 1594
BpiI	GAAGAC	2 cut(s)	64, 336
BplI	GAGNNNNNCTC	2 cut(s)	1399, 1431
BpmI	CTGGAG	2 cut(s)	987, 1827
Bpu10I	CCTNAGC	2 cut(s)	289, 936
BpuEI	CTTGAG	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	712
BsaAI	YACGTR	1 cut(s)	1102
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	8, 561, 983, 1256, 1742
BsaWI	WCCGGW	2 cut(s)	573, 1579
BsaXI	ACNNNNNCTCC	2 cut(s)	960, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	668, 694, 1839
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	4 cut(s)	348, 605, 1871, 1885
Bse3DI	GCAATG	3 cut(s)	473, 934, 1303
BseAI	TCCGGA	1 cut(s)	1579
BseBI	CCWGG	4 cut(s)	984, 1215, 1743, 1806
BseDI	CCNNGG	5 cut(s)	8, 561, 983, 1256, 1742
BseGI	GGATG	3 cut(s)	337, 482, 1060
BseLI	CCNNNNNNNGG	3 cut(s)	668, 694, 1839
BseMI	GCAATG	3 cut(s)	473, 934, 1303
BseMII	CTCAG	7 cut(s)	303, 399, 539, 950, 1599, 1605, 1692
BseNI	ACTGG	4 cut(s)	348, 605, 1871, 1885
BseRI	GAGGAG	2 cut(s)	1178, 1407
BseSI	GKGCMC	1 cut(s)	1846
BseXI	GCAGC	5 cut(s)	1212, 1571, 1574, 1807, 1816
BsgI	GTGCAG	2 cut(s)	789, 1681
Bsh1236I	CGCG	2 cut(s)	1020, 1825
BshNI	GGYRCC	2 cut(s)	4, 301
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	4 cut(s)	60, 574, 711, 1580
BslFI	GGGAC	1 cut(s)	1759
BslI	CCNNNNNNNGG	3 cut(s)	668, 694, 1839
BsmAI	GTCTC	4 cut(s)	1512, 1537, 1604, 1843
BsmFI	GGGAC	1 cut(s)	1759
Bsp1286I	GDGCHC	3 cut(s)	290, 1388, 1846
Bsp13I	TCCGGA	1 cut(s)	1579
Bsp143I	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
BspACI	CCGC	4 cut(s)	832, 1020, 1234, 1814
BspCNI	CTCAG	7 cut(s)	302, 400, 538, 949, 1600, 1606, 1693
BspEI	TCCGGA	1 cut(s)	1579
BspFNI	CGCG	2 cut(s)	1020, 1825
BspLI	GGNNCC	5 cut(s)	6, 142, 303, 1584, 1628
BspPI	GGATC	6 cut(s)	35, 468, 1015, 1047, 1146, 1700
BspT107I	GGYRCC	2 cut(s)	4, 301
BsrDI	GCAATG	3 cut(s)	473, 934, 1303
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	4 cut(s)	348, 605, 1871, 1885
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	5 cut(s)	8, 561, 983, 1256, 1742
BssMI	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	8, 561
Bst2UI	CCWGG	4 cut(s)	984, 1215, 1743, 1806
Bst4CI	ACNGT	4 cut(s)	36, 101, 1160, 1486
Bst6I	CTCTTC	3 cut(s)	244, 1477, 1674
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	1102
BstC8I	GCNNGC	3 cut(s)	61, 1818, 1827
BstDEI	CTNAG	9 cut(s)	76, 289, 408, 525, 936, 1130, 1608, 1614, 1701
BstDSI	CCRYGG	1 cut(s)	1256
BstF5I	GGATG	3 cut(s)	337, 482, 1060
BstFNI	CGCG	2 cut(s)	1020, 1825
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	4 cut(s)	7, 1230, 1279, 1825
BstKTI	GATC	8 cut(s)	43, 463, 581, 847, 1010, 1042, 1141, 1695
BstMAI	GTCTC	4 cut(s)	1512, 1537, 1604, 1843
BstMBI	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 1822, 1826, 1829
BstNI	CCWGG	4 cut(s)	984, 1215, 1743, 1806
BstNSI	RCATGY	2 cut(s)	1275, 1856
BstSCI	CCNGG	5 cut(s)	710, 982, 1213, 1741, 1804
BstSFI	CTRYAG	4 cut(s)	147, 272, 493, 956
BstSLI	GKGCMC	1 cut(s)	1846
BstSNI	TACGTA	1 cut(s)	1102
BstUI	CGCG	2 cut(s)	1020, 1825
BstV1I	GCAGC	5 cut(s)	1212, 1571, 1574, 1807, 1816
BstV2I	GAAGAC	2 cut(s)	64, 336
BstX2I	RGATCY	4 cut(s)	578, 1039, 1138, 1692
BstYI	RGATCY	4 cut(s)	578, 1039, 1138, 1692
BtgI	CCRYGG	1 cut(s)	1256
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	3 cut(s)	337, 482, 1060
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	6 cut(s)	229, 272, 355, 363, 1165, 1698
Cac8I	GCNNGC	3 cut(s)	61, 1818, 1827
CaiI	CAGNNNCTG	1 cut(s)	803
CfoI	GCGC	4 cut(s)	7, 1230, 1279, 1825
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
CseI	GACGC	2 cut(s)	1026, 1756
Csp6I	GTAC	9 cut(s)	257, 302, 316, 755, 1152, 1170, 1528, 1570, 1713
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	4 cut(s)	64, 1272, 1405, 1853
CviQI	GTAC	9 cut(s)	257, 302, 316, 755, 1152, 1170, 1528, 1570, 1713
DdeI	CTNAG	9 cut(s)	76, 289, 408, 525, 936, 1130, 1608, 1614, 1701
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	8 cut(s)	42, 462, 580, 846, 1009, 1041, 1140, 1694
DpnII	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
DraI	TTTAAA	2 cut(s)	244, 1113
DraIII	CACNNNGTG	1 cut(s)	1160
Eam1104I	CTCTTC	3 cut(s)	244, 1477, 1674
EarI	CTCTTC	3 cut(s)	244, 1477, 1674
Ecl136II	GAGCTC	1 cut(s)	288
Eco105I	TACGTA	1 cut(s)	1102
Eco130I	CCWWGG	2 cut(s)	8, 561
Eco24I	GRGCYC	2 cut(s)	290, 1388
Eco32I	GATATC	2 cut(s)	907, 1243
Eco47I	GGWCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	327, 869
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	1626
EcoRI	GAATTC	2 cut(s)	412, 918
EcoRII	CCWGG	4 cut(s)	982, 1213, 1741, 1804
EcoRV	GATATC	2 cut(s)	907, 1243
EcoT14I	CCWWGG	2 cut(s)	8, 561
EcoT22I	ATGCAT	1 cut(s)	1273
EcoT38I	GRGCYC	2 cut(s)	290, 1388
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	8, 561
FaeI	CATG	4 cut(s)	67, 1275, 1408, 1856
FaqI	GGGAC	1 cut(s)	1759
FatI	CATG	4 cut(s)	63, 1271, 1404, 1852
FauI	CCCGC	1 cut(s)	1013
FblI	GTMKAC	2 cut(s)	1185, 1251
Fnu4HI	GCNGC	5 cut(s)	1226, 1560, 1563, 1821, 1830
FokI	GGATG	3 cut(s)	344, 469, 1047
FriOI	GRGCYC	2 cut(s)	290, 1388
Fsp4HI	GCNGC	5 cut(s)	1226, 1560, 1563, 1821, 1830
FspBI	CTAG	1 cut(s)	1328
GlaI	GCGC	4 cut(s)	6, 1229, 1278, 1824
GluI	GCNGC	5 cut(s)	1226, 1560, 1563, 1821, 1830
GsuI	CTGGAG	2 cut(s)	987, 1827
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	4 cut(s)	60, 574, 711, 1580
HgaI	GACGC	2 cut(s)	1026, 1756
HhaI	GCGC	4 cut(s)	7, 1230, 1279, 1825
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	67, 1275, 1408, 1856
Hin6I	GCGC	4 cut(s)	5, 1228, 1277, 1823
HinP1I	GCGC	4 cut(s)	5, 1228, 1277, 1823
HincII	GTYRAC	3 cut(s)	1186, 1397, 1858
HindII	GTYRAC	3 cut(s)	1186, 1397, 1858
HindIII	AAGCTT	5 cut(s)	201, 539, 1026, 1424, 1501
HinfI	GANTC	7 cut(s)	90, 637, 860, 1175, 1334, 1344, 1670
HpaII	CCGG	4 cut(s)	60, 574, 711, 1580
HphI	GGTGA	5 cut(s)	305, 408, 480, 1421, 1895
Hpy166II	GTNNAC	8 cut(s)	32, 82, 991, 1154, 1186, 1252, 1397, 1858
Hpy188I	TCNGA	2 cut(s)	528, 849
Hpy8I	GTNNAC	8 cut(s)	32, 82, 991, 1154, 1186, 1252, 1397, 1858
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	4 cut(s)	1453, 1467, 1774, 1864
HpyCH4III	ACNGT	4 cut(s)	36, 101, 1160, 1486
HpyCH4IV	ACGT	2 cut(s)	171, 1101
HpyCH4V	TGCA	8 cut(s)	478, 682, 806, 1206, 1271, 1554, 1698, 1723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 1822, 1826, 1829
HpyF3I	CTNAG	9 cut(s)	76, 289, 408, 525, 936, 1130, 1608, 1614, 1701
HpySE526I	ACGT	2 cut(s)	171, 1101
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	67, 1275, 1408, 1856
HspAI	GCGC	4 cut(s)	5, 1228, 1277, 1823
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	1579
KpnI	GGTACC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
LmnI	GCTCC	2 cut(s)	140, 730
Lsp1109I	GCAGC	5 cut(s)	1212, 1571, 1574, 1807, 1816
LweI	GCATC	2 cut(s)	322, 1594
MaeI	CTAG	1 cut(s)	1328
MaeII	ACGT	2 cut(s)	171, 1101
MaeIII	GTNAC	4 cut(s)	160, 172, 466, 703
MalI	GATC	8 cut(s)	42, 462, 580, 846, 1009, 1041, 1140, 1694
MboI	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
MflI	RGATCY	4 cut(s)	578, 1039, 1138, 1692
MhlI	GDGCHC	3 cut(s)	290, 1388, 1846
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	99, 646, 1664
MmeI	TCCRAC	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	1273
MroI	TCCGGA	1 cut(s)	1579
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	7 cut(s)	243, 651, 866, 890, 1112, 1488, 1524
MslI	CAYNNNNRTG	2 cut(s)	1065, 1772
MspI	CCGG	4 cut(s)	60, 574, 711, 1580
MspR9I	CCNGG	5 cut(s)	712, 984, 1215, 1743, 1806
MvaI	CCWGG	4 cut(s)	984, 1215, 1743, 1806
MvnI	CGCG	2 cut(s)	1020, 1825
MwoI	GCNNNNNNNGC	4 cut(s)	11, 1822, 1826, 1829
NaeI	GCCGGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	712
NdeII	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	4 cut(s)	67, 1275, 1408, 1856
NlaIV	GGNNCC	5 cut(s)	6, 142, 303, 1584, 1628
NmeAIII	GCCGAG	1 cut(s)	1591
NmuCI	GTSAC	3 cut(s)	172, 466, 703
NsiI	ATGCAT	1 cut(s)	1273
NspI	RCATGY	2 cut(s)	1275, 1856
PciI	ACATGT	1 cut(s)	1852
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	4 cut(s)	860, 1175, 1334, 1344
PflMI	CCANNNNNTGG	1 cut(s)	1839
PfoI	TCCNGGA	1 cut(s)	1213
PkrI	GCNGC	5 cut(s)	1227, 1561, 1564, 1822, 1831
PleI	GAGTC	3 cut(s)	98, 645, 1664
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	98, 645, 1664
Ppu21I	YACGTR	1 cut(s)	1102
PpuMI	RGGWCCY	1 cut(s)	1626
PscI	ACATGT	1 cut(s)	1852
PsiI	TTATAA	1 cut(s)	1052
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	1626
Psp6I	CCWGG	4 cut(s)	982, 1213, 1741, 1804
PspGI	CCWGG	4 cut(s)	982, 1213, 1741, 1804
PspN4I	GGNNCC	5 cut(s)	6, 142, 303, 1584, 1628
PspPI	GGNCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
PspPPI	RGGWCCY	1 cut(s)	1626
PsrI	GAACNNNNNNTAC	2 cut(s)	939, 971
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	4 cut(s)	578, 1039, 1138, 1692
RsaI	GTAC	9 cut(s)	258, 303, 317, 756, 1153, 1171, 1529, 1571, 1714
RsaNI	GTAC	9 cut(s)	257, 302, 316, 755, 1152, 1170, 1528, 1570, 1713
RseI	CAYNNNNRTG	2 cut(s)	1065, 1772
SacI	GAGCTC	1 cut(s)	290
SalI	GTCGAC	1 cut(s)	1184
SaqAI	TTAA	7 cut(s)	243, 651, 866, 890, 1112, 1488, 1524
SatI	GCNGC	5 cut(s)	1226, 1560, 1563, 1821, 1830
Sau3AI	GATC	8 cut(s)	40, 460, 578, 844, 1007, 1039, 1138, 1692
Sau96I	GGNCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
SchI	GAGTC	3 cut(s)	99, 646, 1664
ScrFI	CCNGG	5 cut(s)	712, 984, 1215, 1743, 1806
SduI	GDGCHC	3 cut(s)	290, 1388, 1846
SfaNI	GCATC	2 cut(s)	322, 1594
SfcI	CTRYAG	4 cut(s)	147, 272, 493, 956
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
SmiMI	CAYNNNNRTG	2 cut(s)	1065, 1772
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
SnaBI	TACGTA	1 cut(s)	1102
SsiI	CCGC	4 cut(s)	832, 1020, 1234, 1814
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	2 cut(s)	550, 896
SspMI	CTAG	1 cut(s)	1328
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	5 cut(s)	710, 982, 1213, 1741, 1804
StyI	CCWWGG	2 cut(s)	8, 561
TaaI	ACNGT	4 cut(s)	36, 101, 1160, 1486
TaiI	ACGT	2 cut(s)	174, 1104
TaqI	TCGA	2 cut(s)	103, 1185
TatI	WGTACW	3 cut(s)	256, 1151, 1569
TfiI	GAWTC	4 cut(s)	860, 1175, 1334, 1344
Tru1I	TTAA	7 cut(s)	243, 651, 866, 890, 1112, 1488, 1524
Tru9I	TTAA	7 cut(s)	243, 651, 866, 890, 1112, 1488, 1524
TscAI	CASTG	6 cut(s)	229, 272, 355, 370, 1165, 1705
TseFI	GTSAC	3 cut(s)	172, 466, 703
TseI	GCWGC	5 cut(s)	1225, 1559, 1562, 1820, 1829
Tsp45I	GTSAC	3 cut(s)	172, 466, 703
TspDTI	ATGAA	7 cut(s)	206, 387, 762, 870, 1136, 1485, 1756
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	6 cut(s)	229, 272, 355, 370, 1165, 1705
Van91I	CCANNNNNTGG	1 cut(s)	1839
VpaK11BI	GGWCC	7 cut(s)	130, 643, 794, 1582, 1626, 1739, 1811
XapI	RAATTY	4 cut(s)	325, 412, 871, 918
XceI	RCATGY	2 cut(s)	1275, 1856
XmiI	GTMKAC	2 cut(s)	1185, 1251
XspI	CTAG	1 cut(s)	1328
Zsp2I	ATGCAT	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.